Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00988 ATGTACTCGATACCTCGACTAATGAACTATTTATGGTCTCGTCCTGTTTCTTCTCCGGCGGAGGCCTCTTCGGCAGCCATGTCTCGCCAAGTTCCTACTACTGCGTTCCATAAGTCCAAGACGCTTGATAATAAATATATGCTGGGAGATGAGATCGGAAAAGGAGCATATGGGCGAGTCTACAAGGGTCTGGATTTGGAGAATGGGGACTTTGTTGCTATTAAACAAGTTTCCTTGGAGAATATTGCTCAAGAGGACCTCAACATTATCATGCAAGAGATTGACCTACTGAAGAATTTGAACCACAAAAACATCGTGAAGTATCTTGGATCTCTAAAAACAAAGACTCACCTTCACATAATACTTGAGTATGTGGAGAATGGATCACTTGCCAACATTATCAAGCCAAATAAGTTTGGACCTTTTCCAGAATCATTGGTCGCTGTTTATATTTCTCAGGTTTTGGAAGGCTTGGTTTATCTACATGAGCAGGGTGTAATTCATCGGGACATAAAGGGTGCGAACATACTGACAACCAAAGAGGGTCTCGTGAAACTTGCTGATTTTGGTGTTGCGACAAAATTAACAGAGGCTGATGTTAATACTCATTCAGTTGTTGGAACACCTTACTGGATGGCTCCTGAGGTTATTGAAATGTCAGGAGTTTGTGCTGCTTCTGACATATGGAGTGTTGGATGTACTGTGATCGAACTACTTACATGTGTACCTCCATATTATGATCTACAACCTATGCCAGCTCTGTTTCGCATCGTACAGGACAAGCATCCTCCAATTCCGGATAGCTTATCACCAGATATCACAGATTTCTTACGCCAGTGCTTTAAGAAGGATGCCAGGCAAAGGCCCGATGCAAAAACTTTGCTTTCTCATCCTTGGATTCAGAACTGTCGGCGGGCCTTGCATTCTTCTCTTCGTCATAGTGGCACATTAAGAAACACTCAACAAGATGGATCAATTGAAGCAGAAATTTCTAATGGAGACGATCAAAACTCTTGTGAAGGCCCTTCAGCAGAAAAAAATGAAGTGACTGATTCTGATTTTAAAGCTGATTCCAGGAAGGAGTTGTCGTCAGATGTTGTCACTGATATGAGCAAGTCCCAAAAAAAATTTGCTTCAGGGCCTAATTCTGTTGAGGAAGCAGAAAGTCTGGAAGAGGACACCCTATTGGATCAAGTTCCTACCTTATCCATTCATGAAAATTCATCTCTTCTAACTGGTTCTGGCAGAATTGCTACCTCTGAGCCAATTGAGTTTCATGAATCTCATGGTAGAGCCCGTGATGAAGTGATAATGAATGGTGATGTGCCATCAACAGAACTAAGGGAAGACGCTGCTAGACAACATGGAGAGAAAGAAACTTCAACAACATCTGGAAATAGTTCATTTGGTTTTGAACCTGAAAGTCAGGACAATAGTTTTCAAAAGGTGTCAAAGATGTCAATTGCTTTGGGAGGAAATGAGCTGAGTAAATTTAGTGACACTCCGGGAGATGCTTCCTTAGATGATTTATTTCAACCTTTAGATAAGCTCCCTGGGGATCAAGCTGCTGAAGCATCAACATCTCTATCTACCCTACAATCAAACATGGGTTATCTGCCAGTAAATGATGTTGTAAAAAATGACCTGGCCACAAAATTGAGGGCTACAATTGCTCAAAAGCAAATGGAAAATGAAATGGGACAGGCAAGCAGTGGGGGTGACCTGCTTCGACTAGTGATGGGTGTTTTAAAGGATGATGATATTGATATTGATGGTTTGGTTTTTGATGAGAAGTTATCCGGAGAAAACCTTTTTCCCTTGCAGGCTGTTGAATTTGGCAGATTAGCTGGGTCATTGAGACCTGATGAACCTGAAGATGTAATTGTATCTGCCTGTCAAAAACTGATTGCTATCTTTCATCAAAGGCCTGAGCAGAAAATTGTTTATATTACGCAGCATGGTCTACTCCCATTAACAGAGCTGCTTGAAGTTCCTAAAACTCGTATTATATGTTCAGTGCTCCAGCTTATAAATCAGATTGTTAAGGATAACGTTGACTTCCAGGAGAATGCATGTCTTGTTGGTCTAATTCCTCTGGTAATGGGCTTTGCGGTTCCTGATCGTCCCCGAGAGGTTCGTATGGAAGCAGCTTATTTCTTTCAGCAGCTTTGTCAATCAAGCTCTTTGACATTGCAAATGTTCGTTGCTTGCCGTGGAATACCTGTATTAGTAAGCTTTCTAGAGGCTGACTATGCAAAGTACAGGGACATGGTTCACCTAGCTATTGATGGGATGTGGCAGATCTTTAAACTGCAGCGTTCCACTCTTAGAAATGGTTTCTGTCGTATAGCTGCCAAAAGTGGAATCCTGCTTAGGCTCATTAACACCCTCTACAGCTTGAACGAGGCAACTCGCTTAGCTTCCATAACAGTCGGGGCAGGATATCCGGTTGATGGTTTACCTCAACGACCACGATCAGGTCAACTAGACCCTAGCCACCCTATATTCAGTCAGTACGAGGCCTCATTTCCTGTGCCTGATCAGCCTGATCTTTTGAAGGTCAGGCATGGAATAGTTGATCATCACCTGTCTACTGGAACACCAGAACCTTCTAGGGCTTCAACTTCACATTCTCAAAGATCAGATGCCAATCAATCTGATCACCGACAGTTTTTCACAGATGCTGATAGGCCTCAATCTAGCAATACCACAAATGAAGCCTTGGGATCTAAACCGTCAGAGCTAGCATCTTTGGATAAAGTTGTAAATTTAGCAACCAAGGAACCTTATGTCTCTGCTTCTAAAGAACATGAAAATGTAGATAGATGGAGACCTGAGAGGATGGCCAACTCTAACAGGACTTCCACAGATAGGCCTCCAAAATTGCTGGAACCTGTAGCTAATGGATTTCCTACAGCATTGGCAGGTACCCAACAAGAGCAAGTTCGGCCACTTCTAAGTCTGTTGGACAAAGAACCCCCGTCTCGACATTTTTCTGGTCAGCTCGAGTACATGCGCCACCTTTCTGGATTGGAAAGGCATGAAACTATAATGCCTCTATTGCATGCATCAAATGAAAAGAAGATAAATGGGGAGCCTGATTTCCTAATGGCAGAATTCGCTGATGTTTCTCAACGTGGAAAAGACAATGGAAACCTTGACCCCACTTCTAAGGTTTCTCTTAAAGCGGTGGCCAAGAAGGTAGGACCCCAAGTTTCCAATGAAGGAGCTGCATCCACATCTGGAATTGCTTCACAGACAGCATCTGGGGTACTTTCAGGTTCGGGTGTATTAAATGCTAGACCAGGGAGTGCAACATCTTCTGGACTTCTTTCGCACATGGTTTCAACTTTGAATGCTGATGTAGCAAGGGAATACCTGGCAAAGGTAGCTGATCTTTTGCTTGAGTTCGCTCAGGCAGATACAACTGTTAAGTCATATATGTGCAGCCAAAGCTTGCTTAATCGCCTTTTCCAAATGTTCAATAGGGTAGAGCCCCCAATTCTCTTGAAGATATTGAAGTGTATAAATCATCTATCAACAGATCCAAACTGCTTAGAAAATCTTCAGCGAGCAGATGCAATTAAATATTTGATTCCGAACCTCGAACTCAAAGAAGGGTCTCTGGTGTCGCAAATACATACCGAGGTCCTCAGTGCACTATTCAATTTGTGTAAGATCAATAAGAGGAGACAAGAATATGCAGCTGAAAATGGAATTATTCCACACTTGATGCATTTTATTATATCAGACTCTCCTCTGAAACAATATGCATTGCCTCTACTGTGTGATATGGCCCATGCATCGCGTAATTCTAGGGAGCAGTTAAGAGCCCACGGTGGTCTAGATGTGTATTTGAGCCTGCTTGAGGATGAGCTTTGGTCTGTCACGGCATTGGATTCTATTGCTGTTTGCTTGGCTCATGACAATGACAACCGAAAAGTTGAACAAGCTTTGCTGAAGAAGGATGCTGTCCAGAAATTGGTGAAGTTTTTCCAGTGTTGTCCAGAACAACATTTTGTGCATATATTGGAGCCTTTCTTGAAAATCATCACGAAATCTTCCCGAATCAATACGACTTTGGCTGTCAACGGATTGACCCCATTGCTTATAGCAAGGCTGGACCATCAAGACGCGATTGCTCGGCTTAATCTACTCAAACTGATAAAGGCTGTGTATGAGCATCATCCACGACCCAAGCAATTGATTGTGGAGAATGATTTACCTCATAAACTTCAGAATTTGATTGAGGAACGCAGGGATGGACAACGGTCTGGTGGGCAGGTGTTGGTGAAGCAAATGGCCACATCTTTGCTTAAAGCTCTTCATATAAATACCGTCTTGTAA 4347 42.7 MYSIPRLMNYLWSRPVSSPAEASSAAMSRQVPTTAFHKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSLKTKTHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYISQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDKHPPIPDSLSPDITDFLRQCFKKDARQRPDAKTLLSHPWIQNCRRALHSSLRHSGTLRNTQQDGSIEAEISNGDDQNSCEGPSAEKNEVTDSDFKADSRKELSSDVVTDMSKSQKKFASGPNSVEEAESLEEDTLLDQVPTLSIHENSSLLTGSGRIATSEPIEFHESHGRARDEVIMNGDVPSTELREDAARQHGEKETSTTSGNSSFGFEPESQDNSFQKVSKMSIALGGNELSKFSDTPGDASLDDLFQPLDKLPGDQAAEASTSLSTLQSNMGYLPVNDVVKNDLATKLRATIAQKQMENEMGQASSGGDLLRLVMGVLKDDDIDIDGLVFDEKLSGENLFPLQAVEFGRLAGSLRPDEPEDVIVSACQKLIAIFHQRPEQKIVYITQHGLLPLTELLEVPKTRIICSVLQLINQIVKDNVDFQENACLVGLIPLVMGFAVPDRPREVRMEAAYFFQQLCQSSSLTLQMFVACRGIPVLVSFLEADYAKYRDMVHLAIDGMWQIFKLQRSTLRNGFCRIAAKSGILLRLINTLYSLNEATRLASITVGAGYPVDGLPQRPRSGQLDPSHPIFSQYEASFPVPDQPDLLKVRHGIVDHHLSTGTPEPSRASTSHSQRSDANQSDHRQFFTDADRPQSSNTTNEALGSKPSELASLDKVVNLATKEPYVSASKEHENVDRWRPERMANSNRTSTDRPPKLLEPVANGFPTALAGTQQEQVRPLLSLLDKEPPSRHFSGQLEYMRHLSGLERHETIMPLLHASNEKKINGEPDFLMAEFADVSQRGKDNGNLDPTSKVSLKAVAKKVGPQVSNEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSTLNADVAREYLAKVADLLLEFAQADTTVKSYMCSQSLLNRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRADAIKYLIPNLELKEGSLVSQIHTEVLSALFNLCKINKRRQEYAAENGIIPHLMHFIISDSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLSLLEDELWSVTALDSIAVCLAHDNDNRKVEQALLKKDAVQKLVKFFQCCPEQHFVHILEPFLKIITKSSRINTTLAVNGLTPLLIARLDHQDAIARLNLLKLIKAVYEHHPRPKQLIVENDLPHKLQNLIEERRDGQRSGGQVLVKQMATSLLKALHINTVL 1448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5299175 5325281 + CmoCh14G009880.1 Cmo14g00988 396254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00988 1448 PRINTS Tyrosine kinase catalytic domain signature 160 178 IPR001245 GO:0004672|GO:0006468
Cmo14g00988 1448 PRINTS Tyrosine kinase catalytic domain signature 122 135 IPR001245 GO:0004672|GO:0006468
Cmo14g00988 1448 PRINTS Tyrosine kinase catalytic domain signature 269 291 IPR001245 GO:0004672|GO:0006468
Cmo14g00988 1448 PRINTS Tyrosine kinase catalytic domain signature 226 248 IPR001245 GO:0004672|GO:0006468
Cmo14g00988 1448 SUPERFAMILY ARM repeat 616 808 IPR016024 -
Cmo14g00988 1448 SMART arm_5 1182 1226 IPR000225 GO:0005515
Cmo14g00988 1448 SMART arm_5 1228 1267 IPR000225 GO:0005515
Cmo14g00988 1448 SMART arm_5 727 770 IPR000225 GO:0005515
Cmo14g00988 1448 SMART arm_5 642 682 IPR000225 GO:0005515
Cmo14g00988 1448 Gene3D - 1099 1443 IPR011989 -
Cmo14g00988 1448 MobiDBLite consensus disorder prediction 929 963 - -
Cmo14g00988 1448 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 28 1404 - -
Cmo14g00988 1448 Pfam Protein kinase domain 47 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g00988 1448 SMART serkin_6 46 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g00988 1448 MobiDBLite consensus disorder prediction 931 948 - -
Cmo14g00988 1448 ProSiteProfiles Protein kinase domain profile. 46 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g00988 1448 Gene3D Transferase(Phosphotransferase) domain 1 43 339 - -
Cmo14g00988 1448 SUPERFAMILY ARM repeat 1109 1422 IPR016024 -
Cmo14g00988 1448 MobiDBLite consensus disorder prediction 314 391 - -
Cmo14g00988 1448 ProSitePatterns Protein kinases ATP-binding region signature. 52 75 IPR017441 GO:0005524
Cmo14g00988 1448 PANTHER MAP KINASE KINASE KINASE 28 1404 - -
Cmo14g00988 1448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Cmo14g00988 1448 MobiDBLite consensus disorder prediction 346 366 - -
Cmo14g00988 1448 MobiDBLite consensus disorder prediction 867 881 - -
Cmo14g00988 1448 SUPERFAMILY Protein kinase-like (PK-like) 43 301 IPR011009 -
Cmo14g00988 1448 Gene3D - 609 811 IPR011989 -
Cmo14g00988 1448 MobiDBLite consensus disorder prediction 447 478 - -
Cmo14g00988 1448 MobiDBLite consensus disorder prediction 458 478 - -
Cmo14g00988 1448 MobiDBLite consensus disorder prediction 895 911 - -
Cmo14g00988 1448 MobiDBLite consensus disorder prediction 314 345 - -
Cmo14g00988 1448 CDD STKc_Cdc7_like 45 300 - -
Cmo14g00988 1448 MobiDBLite consensus disorder prediction 861 914 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00366 Cmo-Chr10:1655885 Cmo14g00988 Cmo-Chr14:5299175 1.47E-25 dispersed
Cmo11g00331 Cmo-Chr11:1614017 Cmo14g00988 Cmo-Chr14:5299175 1.35E-26 dispersed
Cmo14g00988 Cmo-Chr14:5299175 Cmo17g00245 Cmo-Chr17:1450940 1.99E-74 dispersed
Cmo14g01692 Cmo-Chr14:13276907 Cmo14g00988 Cmo-Chr14:5299175 5.38E-36 transposed
Cmo01g00267 Cmo-Chr1:1218983 Cmo14g00988 Cmo-Chr14:5299175 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74842 PF00069 Pkinase 1.30E-72 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00988 - - csv:101206469 2631.28