Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo14g00989 | ATGGCGGCTGCAGCTACAACAAGCGTTGTGCCGCCGAATCGGCGGCGTGCGGTTACTGCCCCGGAAGACAAGTTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGAGTTTTGATCAGATGGGCATTAAGGATGATCTTCTCCGTGGAATATATGCATACGGTTTTGAAAAGCCCTCGGCTATTCAGCAGAGAGCTGTGAGGCCGATTATTGAGGGTCGAGATGTTATTGCTCAGGCCCAATCTGGAACTGGCAAGACCTCCATGATTGCACTTACCGTTTGCCAGGTGGTTGATACATCCAGTAGAGAGGTGCAGGCCTTGATCTTGTCCCCTACGAGAGAATTGGCAACTCAGACAGAGAAGGTTATATTGGCAATTGGCGACTACATTAATATACAAGCACACTCATGTATCGGAGGAAAAAGTGTGGGTGAAGATATCAGAAAGCTTGAGTTTGGAGTTCAGGTTGTGTCAGGAACTCCTGGAAGAGTCTGTGACATGATCAAGAGAAGGACACTGCGTACCCGAGCCATTAAGTTGTTAATTTTGGATGAGTCTGATGAAATGCTGAGCAGAGGGTTTAAAGACCAAATTTATGATGTATATCGATATCTCCCACCAGAACTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATCCTTGAGATGACAAACAAGTTTATGACAGATCCTGTGAGGATCCTTGTCAAGCGTGATGAGTTAACTTTAGAGGGTATTAAGCAATTCTTCGTTGCAGTTGAAAGGGAAGAGTGGAAATTTGATACCTTATGTGATCTTTATGACACCTTGACTATCACCCAAGCTGTAATTTTCTGTAACACTAAGCGAAAGGTTGAATGGTTGACTGAGAAGATGCGAAGTAATAACTTCACAGTTTCCCATATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCAATCATGGGGGAGTTCCGATCTGGAACTACTCGTGTCCTAATCACTACTGATGTTTGGGCAAGAGGGCTTGATGTTCAGCAGGTATCACTAGTGATAAATTATGACCTTCCAAACAATCGAGAGCTTTACATTCACAGGATAGGAAGGTCGGGTCGGTTTGGGCGTAAGGGTGTTGCTATTAACTTTGTGAAAAGTGATGACATCAAGATCCTGAGAGATATTGAGCAATACTACAGTACCCAGATTGATGAGATGCCAATGAACGTTGCTGATTTGATTTAA | 1233 | 44.44 | MAAAATTSVVPPNRRRAVTAPEDKLEFETTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQVVDTSSREVQALILSPTRELATQTEKVILAIGDYINIQAHSCIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI | 410 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 5325450 | 5329933 | - | CmoCh14G009890.1 | Cmo14g00989 | 396255 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo14g00989 | 410 | Pfam | DEAD/DEAH box helicase | 62 | 224 | IPR011545 | GO:0003676|GO:0005524 | |
Cmo14g00989 | 410 | Pfam | Helicase conserved C-terminal domain | 263 | 371 | IPR001650 | - | |
Cmo14g00989 | 410 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 68 | 238 | IPR014001 | - | |
Cmo14g00989 | 410 | CDD | SF2_C_DEAD | 250 | 380 | - | - | |
Cmo14g00989 | 410 | Gene3D | - | 246 | 410 | IPR027417 | - | |
Cmo14g00989 | 410 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 37 | 65 | IPR014014 | GO:0003724 | |
Cmo14g00989 | 410 | CDD | DEADc_EIF4AIII_DDX48 | 39 | 239 | - | - | |
Cmo14g00989 | 410 | SMART | helicmild6 | 290 | 371 | IPR001650 | - | |
Cmo14g00989 | 410 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 21 | 403 | - | - | |
Cmo14g00989 | 410 | SMART | ultradead3 | 56 | 253 | IPR014001 | - | |
Cmo14g00989 | 410 | PANTHER | BNAC03G41130D PROTEIN | 21 | 403 | - | - | |
Cmo14g00989 | 410 | Gene3D | - | 27 | 245 | IPR027417 | - | |
Cmo14g00989 | 410 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 105 | 393 | IPR027417 | - | |
Cmo14g00989 | 410 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 249 | 410 | IPR001650 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g01115 | Cmo-Chr6:8585371 | Cmo14g00989 | Cmo-Chr14:5325450 | 1.81E-92 | dispersed | |
Cmo14g00989 | Cmo-Chr14:5325450 | Cmo17g00686 | Cmo-Chr17:7014859 | 0 | dispersed | |
Cmo14g00243 | Cmo-Chr14:1115222 | Cmo14g00989 | Cmo-Chr14:5325450 | 2.36E-67 | transposed | |
Cmo01g00266 | Cmo-Chr1:1210950 | Cmo14g00989 | Cmo-Chr14:5325450 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo14g00989 | K13025 | - | csv:101222664 | 798.505 |