Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00989 ATGGCGGCTGCAGCTACAACAAGCGTTGTGCCGCCGAATCGGCGGCGTGCGGTTACTGCCCCGGAAGACAAGTTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGAGTTTTGATCAGATGGGCATTAAGGATGATCTTCTCCGTGGAATATATGCATACGGTTTTGAAAAGCCCTCGGCTATTCAGCAGAGAGCTGTGAGGCCGATTATTGAGGGTCGAGATGTTATTGCTCAGGCCCAATCTGGAACTGGCAAGACCTCCATGATTGCACTTACCGTTTGCCAGGTGGTTGATACATCCAGTAGAGAGGTGCAGGCCTTGATCTTGTCCCCTACGAGAGAATTGGCAACTCAGACAGAGAAGGTTATATTGGCAATTGGCGACTACATTAATATACAAGCACACTCATGTATCGGAGGAAAAAGTGTGGGTGAAGATATCAGAAAGCTTGAGTTTGGAGTTCAGGTTGTGTCAGGAACTCCTGGAAGAGTCTGTGACATGATCAAGAGAAGGACACTGCGTACCCGAGCCATTAAGTTGTTAATTTTGGATGAGTCTGATGAAATGCTGAGCAGAGGGTTTAAAGACCAAATTTATGATGTATATCGATATCTCCCACCAGAACTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATCCTTGAGATGACAAACAAGTTTATGACAGATCCTGTGAGGATCCTTGTCAAGCGTGATGAGTTAACTTTAGAGGGTATTAAGCAATTCTTCGTTGCAGTTGAAAGGGAAGAGTGGAAATTTGATACCTTATGTGATCTTTATGACACCTTGACTATCACCCAAGCTGTAATTTTCTGTAACACTAAGCGAAAGGTTGAATGGTTGACTGAGAAGATGCGAAGTAATAACTTCACAGTTTCCCATATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCAATCATGGGGGAGTTCCGATCTGGAACTACTCGTGTCCTAATCACTACTGATGTTTGGGCAAGAGGGCTTGATGTTCAGCAGGTATCACTAGTGATAAATTATGACCTTCCAAACAATCGAGAGCTTTACATTCACAGGATAGGAAGGTCGGGTCGGTTTGGGCGTAAGGGTGTTGCTATTAACTTTGTGAAAAGTGATGACATCAAGATCCTGAGAGATATTGAGCAATACTACAGTACCCAGATTGATGAGATGCCAATGAACGTTGCTGATTTGATTTAA 1233 44.44 MAAAATTSVVPPNRRRAVTAPEDKLEFETTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQVVDTSSREVQALILSPTRELATQTEKVILAIGDYINIQAHSCIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5325450 5329933 - CmoCh14G009890.1 Cmo14g00989 396255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00989 410 Pfam DEAD/DEAH box helicase 62 224 IPR011545 GO:0003676|GO:0005524
Cmo14g00989 410 Pfam Helicase conserved C-terminal domain 263 371 IPR001650 -
Cmo14g00989 410 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
Cmo14g00989 410 CDD SF2_C_DEAD 250 380 - -
Cmo14g00989 410 Gene3D - 246 410 IPR027417 -
Cmo14g00989 410 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724
Cmo14g00989 410 CDD DEADc_EIF4AIII_DDX48 39 239 - -
Cmo14g00989 410 SMART helicmild6 290 371 IPR001650 -
Cmo14g00989 410 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 21 403 - -
Cmo14g00989 410 SMART ultradead3 56 253 IPR014001 -
Cmo14g00989 410 PANTHER BNAC03G41130D PROTEIN 21 403 - -
Cmo14g00989 410 Gene3D - 27 245 IPR027417 -
Cmo14g00989 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 393 IPR027417 -
Cmo14g00989 410 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 410 IPR001650 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01115 Cmo-Chr6:8585371 Cmo14g00989 Cmo-Chr14:5325450 1.81E-92 dispersed
Cmo14g00989 Cmo-Chr14:5325450 Cmo17g00686 Cmo-Chr17:7014859 0 dispersed
Cmo14g00243 Cmo-Chr14:1115222 Cmo14g00989 Cmo-Chr14:5325450 2.36E-67 transposed
Cmo01g00266 Cmo-Chr1:1210950 Cmo14g00989 Cmo-Chr14:5325450 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00989 K13025 - csv:101222664 798.505