Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01019 ATGTGTGGTGGTCCAGAAAAATCCAATTCTGCATCTACTACTTCGGCAAGATTATCTAACCCCAAAGACATGAATCATTTAACTGTTGATTGTGAGGATTCTTTTTATAGTTTACTGGAGCTTGCTTCTGACAACGATGCAGAAGGCTTCAAGAGTATGATGGAGTCTAATTTGTTCTCTCTTAACAAGTCTGGACTCTGGTATGTTCGTCAAAAAGGTTCAAAACAAGTTGTTAATGAGCACAGAACACCCCTGATGGTTGCTGCCACATATGGTTGTGTTGATGTTCTGAAGCTTATACTATCATATCCTGAGGTTGATGTTAATCTCTCATCTGGCACAGACAAGAGCACTGCTCTCCACTGTGCTACTTCCAGTGGTTCTGTGAATGCTGTTGATATTGTCGATTTGCTATTATCTGCTGGTGCTGACCCGAAAACCAAGGATGTTAATGGCGACTGCCCTGTGGATGTCATTTTCGTTCACCCAAAATTGCAGAAGCAGAACACAAGGTTCAGGCTAGAGGAGCTTCTCAATAATCATTCAAGTGGATCTTTGGATGTATCCTGTTTACATTTGTCAATCAAAACGCCTGATTCAGATTCACCGCTACTTTCCTCGTCGTTGGAGGATGAGTTTCGATCTACACCCAAGTCTATTTCCTCTCCCAAATTTACTGACGGGTTTGCAAACTCTACAAAGGAGAAAAAAGAATATCCAATTGACCCATCACTTCCTGACATCAAGAACAGCATATATGCAACTGATGAGTTTCGTATGTTCTCTTTCAAGGTGAGACCTTGTTCTCGGGCGTATTCTCATGATTGGACCGAGTGTCCTTTTGTCCACCCAGGGGAGAATGCCCGCAGAAGAGACCCAAGGAAGTTTCATTACAGCTGTGTTCCTTGCCCTGACTTTAGAAAGGGGGCTTGCAGGCATGGGGATATGTGTGAATATGCACATGGCGTATTCGAGTGTTGGCTTCACCCAGCACAGTATCGAACTCGCCTTTGCAAGGATGGCACCAGTTGCAATAGGAGGGTCTGCTTCTTTGCTCACACTAACGAAGAACTAAGGCCATTGTATGTGTCCACTGGATCTGCTGTCCCGTCCCCACGATCAATTGGATCTGCTCCAACTGTAATGGATATGGCTACTGCATTGGGTCTTCTGCCTGGTTCCCCTTCATCAGTGTCAGCTTTATCTCCATCTCCATTTACTCAGACCATGTCTCCCTCTTCTAATGGTGTTTGTCACTCTTCTGTGAACTGGCAGCAACCAAATGTACCGACTCTTCATTTACCAGGAAGTAACCTTCAATCCAGCCGATTGAGGTCGTCTCTGAATGCCAGGGATATGCCTCTGGAAGATTTGAACGTCCTGCCTGACTTCAACAGCCAGCCACGGATTTTGAATGATTTGAACTGTTTCTCTCAACCTTGTCCGACTCCTGTGTCTGTGAGCCGATCTGGCTGGACCCAAACTCTAACTCCTAACAATCTTGAAGAATTATTTTCTTCTGAGATCTCTTCGTCTCCTAGATTCTCCGATCCAGCTGCCAATGTCTTTTCCCCTACGCGCAAATCAACAATGCTAAACCAATTCCAGCAGCAGCAGCAGAACATGTTATCACCTATCAATACAAGCATTATGTCCCCTAAGAATGTTGATCATCATTTGTTGCAGGCCTCTTATGGAGTTTCATCCCCGGGAAGGATGTCGCCAAGAAACACCGAGCCACATTCCCCTATGGGATCTAGGTTCTCCGCCTTCGTACAGCGTGAAAAGCATAATCTGCGCACTCTCAGTTCAAGGGAGCTTGGATCTAATGTCCCAAGCTCATTGATCGGATCTCCTATCAATTCTTTGCCTAAATGGGGGTCCCCCAAAGGAAAGGTGGATTGGTCGGTTGGTAAGAATGAACTGGGTCAACAAATGCGAAGGTCATCTTCTTTTGAAATGGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAAACCCTTGTGAAGGAATCCCCACCTGAGATGCTTAAAGAGAAGCTGGCAGTGCCTGGGAGGGGCGGTGCAGCATCCGGTGAGGGTCTAACTACTACTAAACCACAATTAGAATCCACTGATCATTCTGTGATTGGAGCTTGGCTTGAGCAGATGCAGCTTGATCAGCTTGTAGTGTAG 2178 45.64 MCGGPEKSNSASTTSARLSNPKDMNHLTVDCEDSFYSLLELASDNDAEGFKSMMESNLFSLNKSGLWYVRQKGSKQVVNEHRTPLMVAATYGCVDVLKLILSYPEVDVNLSSGTDKSTALHCATSSGSVNAVDIVDLLLSAGADPKTKDVNGDCPVDVIFVHPKLQKQNTRFRLEELLNNHSSGSLDVSCLHLSIKTPDSDSPLLSSSLEDEFRSTPKSISSPKFTDGFANSTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRHGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFTQTMSPSSNGVCHSSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDLNVLPDFNSQPRILNDLNCFSQPCPTPVSVSRSGWTQTLTPNNLEELFSSEISSSPRFSDPAANVFSPTRKSTMLNQFQQQQQNMLSPINTSIMSPKNVDHHLLQASYGVSSPGRMSPRNTEPHSPMGSRFSAFVQREKHNLRTLSSRELGSNVPSSLIGSPINSLPKWGSPKGKVDWSVGKNELGQQMRRSSSFEMGNNGEEPDLSWVQTLVKESPPEMLKEKLAVPGRGGAASGEGLTTTKPQLESTDHSVIGAWLEQMQLDQLVV 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5542971 5545148 + CmoCh14G010190.1 Cmo14g01019 396285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01019 725 Pfam Ankyrin repeats (3 copies) 76 149 IPR002110 GO:0005515
Cmo14g01019 725 SUPERFAMILY Ankyrin repeat 79 159 IPR036770 -
Cmo14g01019 725 ProSiteProfiles Zinc finger C3H1-type profile. 302 324 IPR000571 GO:0046872
Cmo14g01019 725 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 322 IPR000571 GO:0046872
Cmo14g01019 725 PANTHER UNKEMPT FAMILY MEMBER 19 723 IPR045234 -
Cmo14g01019 725 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 19 723 - -
Cmo14g01019 725 MobiDBLite consensus disorder prediction 1 23 - -
Cmo14g01019 725 Gene3D - 32 182 IPR036770 -
Cmo14g01019 725 SMART ANK_2a 80 110 IPR002110 GO:0005515
Cmo14g01019 725 SMART ANK_2a 115 147 IPR002110 GO:0005515
Cmo14g01019 725 Gene3D - 297 360 - -
Cmo14g01019 725 MobiDBLite consensus disorder prediction 1 22 - -
Cmo14g01019 725 ProSiteProfiles Ankyrin repeat region circular profile. 115 149 - -
Cmo14g01019 725 ProSiteProfiles Ankyrin repeat profile. 115 150 IPR002110 GO:0005515
Cmo14g01019 725 SMART c3hfinal6 332 355 IPR000571 GO:0046872
Cmo14g01019 725 SMART c3hfinal6 297 323 IPR000571 GO:0046872
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00238 Cmo14g01019 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00067 Cmo-Chr6:411596 Cmo14g01019 Cmo-Chr14:5542971 0 dispersed
Cmo14g00457 Cmo-Chr14:2196576 Cmo14g01019 Cmo-Chr14:5542971 0 dispersed
Cmo14g01019 Cmo-Chr14:5542971 Cmo20g00367 Cmo-Chr20:1811451 5.09E-148 dispersed
Cmo01g00238 Cmo-Chr1:1076502 Cmo14g01019 Cmo-Chr14:5542971 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10999 PF12796 Ank_2 4.60E-10 CL0465 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01019 - - cpep:111790396 1390.17