Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01072 ATGGCGGGTAAGGCGGCGCCGGCGAGGAATGTTCTGTTTGGAAAATACGAAATGGGTCGGCTATTGGGGAAAGGAACCTTTGCGAAGGTCTATCATGGAACAAACTTGATGACCCACGACAGTGTCGCCATTAAAGTGATCCTCAAGGACAGGGTAAAGAAAGAGGGACTTCTTGAGCAAGTCCGGCGAGAAATTTCTGTCATGGGGTTGGTTCGTCATCCCCATATAGTGGAATTGAAAGAAGTAATGGCCACGAAATCCAAGGTGTATTTTGTGATGGAATACGTTAATGGAGGCGAACTGTTTGTTAAATTGTCTCAACAAGGAAAATTGACAGAAGATGGAGGAAGAAAGTACTTTCAACAGCTTCTCTCCGCCGTGGACTTTTGCCACAGCCGTGGTGTCTCTCACCGTGATTTGAAGCCTGAAAATCTCCTTCTCGACGTGAATGGGAATTTGAAGGTATCTGATTTTGGCCTCTCCGCCCTGCCGGAGCAGCTCCGGATCGACGGATTGCTTCACACACGGTGTGGAACACCGGCGTATGTAGCGCCTGAGGTGCTCAGAAAGAGGGGATACGAGGGCGCTAAGTCGGATCTTTGGTCTTGTGGAGTGATTTTGTTTGTGTTGCTTGCTGGGTCTCTGCCATTTAAAGCTGATAATGTGATGAAGTTGTATAGGAAGATTTTCAAGGCGGAGTTTGAGTTTCCTCCTTGGTTTTCTTCAGAAGCTAAGGAAATGGTGTCAAAGCTTCTGGTTGTTGATCCTGAGAAGAGAGCTTCAATGGATGAGATAATGCAGAGTTGTTGGTTTCAAAAGGGCTTCACAAAGCCACTTTCATTCAATGACAAAGACGAACTCAACAGTGAAATCTCTGACTTGACAAATCCCAAGTTGTTGTCATCTTCTCCTCCTTTCTACAACGCCTTCGAGTTCATTTCCTCAATGTCCTCTGGTTTTGACTTGACTAGTTTGTTTGAAAGCAAGAAGAAACAAGCCTCAATTTTCACTTCAAAATGCTCTGCTTCAGCCATTATAGCCAAGCTTCAGTCTCTAGCGCAGAAGCTGAACTTCAAGGCTACTAATCAGAGGGAGTTCAAGGTGAGACTGCAGGCCAAGGAGGAGGGGAGGAAAGGGAAGCTGGCGGTGACGGTGGAGGTTTACGAGGTAGCGCCGGAGCTGGCGGTGGTCGAGTTCTCGAAGTCGGCAGGGGACACATTGGAGTACAATAAGTTTTGTGAGAAGGATGTGAGGCCTGCATTGAAGGACATCGTTTGGAGCTGGCAAGGAGAGAATGAGTGCCTATAA 1308 47.17 MAGKAAPARNVLFGKYEMGRLLGKGTFAKVYHGTNLMTHDSVAIKVILKDRVKKEGLLEQVRREISVMGLVRHPHIVELKEVMATKSKVYFVMEYVNGGELFVKLSQQGKLTEDGGRKYFQQLLSAVDFCHSRGVSHRDLKPENLLLDVNGNLKVSDFGLSALPEQLRIDGLLHTRCGTPAYVAPEVLRKRGYEGAKSDLWSCGVILFVLLAGSLPFKADNVMKLYRKIFKAEFEFPPWFSSEAKEMVSKLLVVDPEKRASMDEIMQSCWFQKGFTKPLSFNDKDELNSEISDLTNPKLLSSSPPFYNAFEFISSMSSGFDLTSLFESKKKQASIFTSKCSASAIIAKLQSLAQKLNFKATNQREFKVRLQAKEEGRKGKLAVTVEVYEVAPELAVVEFSKSAGDTLEYNKFCEKDVRPALKDIVWSWQGENECL 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5903459 5904766 + CmoCh14G010720.1 Cmo14g01072 396338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01072 435 ProSiteProfiles NAF domain profile. 302 327 IPR018451 GO:0007165
Cmo14g01072 435 Gene3D Transferase(Phosphotransferase) domain 1 8 310 - -
Cmo14g01072 435 SUPERFAMILY Protein kinase-like (PK-like) 12 272 IPR011009 -
Cmo14g01072 435 PANTHER - 9 434 - -
Cmo14g01072 435 SMART serkin_6 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g01072 435 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 9 434 - -
Cmo14g01072 435 Pfam NAF domain 304 360 IPR004041 GO:0007165
Cmo14g01072 435 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g01072 435 CDD CIPK_C 308 422 - -
Cmo14g01072 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Cmo14g01072 435 Gene3D Kinase associated domain 1, KA1 311 427 - -
Cmo14g01072 435 ProSitePatterns Protein kinases ATP-binding region signature. 22 54 IPR017441 GO:0005524
Cmo14g01072 435 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01072 Cmo-Chr14:5903459 Cmo10g00509 Cmo-Chr10:2286667 9.13E-170 dispersed
Cmo14g01072 Cmo-Chr14:5903459 Cmo09g00419 Cmo-Chr9:1843227 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74846 PF00069 Pkinase 8.80E-75 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01072 - - csv:101218600 778.859