Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01078 ATGGCTGGGCCAACTCCCGATGGCAACTCCGGCAATCCGCCTTCCACGCCTGATTCTCCCACCACCTCCGCCGGTTTCGAAACGGACCAGCTCCCTCATCTCAGCCAAACTTCCGATATCTACCCCGATGAGGACGAAGCCGCTGTTGATCCTCATGTCCTTCCCGACGAGCCTGACCCCGATGAAGAGGAGGAAGGAGAGGATCTCTACCACGACAATTTCTTGGACGACTATCGGAGGATGGACGAGCATGACCAGTACGAGTCCTTGGACCTTGACGATTCATTAGAGGACGAGAGAGATTTGGATCAGATTATGGAGGACAGGCGAGCTGCCGAGATAGAACTGGACACTCGCGATGCTCAGTTCACCCGTCGGAAGCTTCCTGAGCTATTACATGATCAAGACTCGGAGGATGACAATTACAGGCCTTCAAAAAGAGCAAGAGCTGATTTTCGGCCTCCAGCTGCTGCAAGAAGCTATGATGACATTGATGGTATGCAGAGTTCTCCTGGTAGATCACAAAGGGAAACTTCACGAGACGACGTGCCCATTACAGATCATTCTGTTGATGACCAATATGAGGATGAAGACGATGATGAAAATGAGAATGAGATGTATCGTGTTCAAGGGCCACTTAGAGAACATGTTACCATGGATGCGGTTCGGCGCTTTATAGGGAAAAAGTTCAAGAAATTCTTGGAAACATATGTGAATCCAAAGAGTGGAAATGGTGAGCTTGAGTACATGCGACTGATAAATGAGATGGTGTTAGCCAATAGGTGCAGTTTGGAGATTGATTACAAACAGTTTATCTTTGTCCATCCGAATATTGCAATCTGGTTGGCTGATGCACCCCAGCCCGTCTTAGAAGTTATGGAAGATGTTGCAAAGAAGGTTGTCTTTGACATACATCCAAATTACAAAAATATCCACCAAAAGATCTATGTTCGCATCAATAATTTACCAGTCTATGATCAGATTCGAAATATTAGGCAAATTCATTTAAATACCATGATTCGAATTGGGGGCGTAGTAACCCGACGCTCTGGTGTCTTCCCCCAGTTGCAGCAGGTGAAGTATGATTGTGGTAAATGTGGCACAATATTGGGACCATTTTTTCAGAATTCTTATTCAGAGGTCAAGGTTGGCTCTTGTCCTGAATGCCAGTCGAAAGGGCCATTCACAGTAAATGTCGAGCAGACTATATATAGGAATTACCAAAAGCTAACCCTCCAAGAAAGTCCAGGAATTGTGCCAGCTGGGCGACTTCCTAGGTACAAGGAAGTGATACTATTGAATGATCTAATTGATTGTGCTCGTCCTGGGGAAGAAATTGAAGTCACAGGCATTTATACAAACAATTTTGACTTATCATTGAATACAAAGAACGGTTTTCCTGTATTTTCCACTGTTGTTGAAGCAAATTACATTACCAAGAAGCAAGACCTCTTTTCTGCTTACAAGCTTACCCAGGAAGACAAAGATGAGATTGAGAAGTTGTCTAAAGACCCTAGAATTGGAGAAAGGATAATCAAGTCCATTGCACCATCAATCTATGGTCACGAGGACATAAAAACAGCAATTGCTCTTGCAATGTTTGGAGGTCAAGAAAAAAATGTTGAAGGGAAACACCGGTTACGAGGCGATATCAATGTACTTCTATTAGGTGATCCTGGCACTGCGAAATCTCAATTTCTCAAGTATGTTGAGAAAACTGGGCATAGAGCAGTGTACACCACAGGGAAAGGAGCTTCAGCCGTAGGTCTAACAGCAGCAGTGCACAAGGACCCTGTTACAAGGGAGTGGACCCTTGAAGGAGGTGCCCTTGTATTAGCCGATAGAGGAATCTGTCTTATTGATGAGTTTGACAAAATGAATGATCAGGATAGGGTAAGTATCCATGAAGCAATGGAGCAACAAAGCATTAGCATATCAAAAGCTGGAATAGTCACTTCTCTTCAAGCCAGATGTTCTGTCATTGCTGCTGCCAATCCCATTGGAGGAAGGTACGACTCCTCAAAAACATTCACGCAAAATGTAGAGCTGACCGATCCTATTATTTCTCGATTTGACATCCTCTGCGTTGTTAAGGATGTGGTGGACTCTGTAACAGACGAGATGCTTGCTAAGTTTGTGGTTGATAGTCATTTCAAGTCACAACCAAAGGGCGGCAATATTGATGACAAGTCTATAAATGAATCTCAGGAGGACAGTCAAGACTCTGCAGGGCCACTGGATTCTGAGGTGCTCCCCCAAGATCTGCTGAGGAAGTACATAACTTATTCTAAGTTGAATGTTTTTCCAAGGTTGCATGATGCTGATATGGATAAGTTAACACACGTCTATGCAGAATTACGAAGGGAATCTTCTCATGGGCAAGGAGTTCCTATTGCAGTTAGGCACATAGAGTCAATGATACGCATGTCTGAAGCACATGCAAGAATGCACCTTAGACAGCACGTCACACAAGAAGATGTTGATATGGCAATTCGTGTGTTACTGGATTCTTTCATTTCAACCCAAAAATTTGGAGTGCAGAAAGCTCTGCAAAAGAGCTTCAGAAAGTACATGACTTTCAAGAAGGATTACAATGAGCTGCTCCTATATCTTCTCCGAGAGCTTGTGAAGAATGCACTTCACTTTGAGGAAATTGTTCGCGGATCTACATCGGAGCTTACCCACATTAATGTGAAATTGGAAGACCTACAAAGCAAGGCACAGGAACACGAAATTTATGATCTGAAACCCTTCTTCACCAGCTCTCATTTTTCAAATGCTAAGTTTGTGCTGGATGAAGAGCATGGTCTAATCAGGCATCATCTTGCCAGGACTCGAACGTTGTGGGTAGGAAGTTGTGTTAAATGGGGATTCAAAAGACCTCTTTGGATATTTAGAGATGTAAACAGGGGGTCTGAGCATATTTATAGGATTTGGAAGGCGATGGGATATTGTAAGGGATGA 2964 43.69 MAGPTPDGNSGNPPSTPDSPTTSAGFETDQLPHLSQTSDIYPDEDEAAVDPHVLPDEPDPDEEEEGEDLYHDNFLDDYRRMDEHDQYESLDLDDSLEDERDLDQIMEDRRAAEIELDTRDAQFTRRKLPELLHDQDSEDDNYRPSKRARADFRPPAAARSYDDIDGMQSSPGRSQRETSRDDVPITDHSVDDQYEDEDDDENENEMYRVQGPLREHVTMDAVRRFIGKKFKKFLETYVNPKSGNGELEYMRLINEMVLANRCSLEIDYKQFIFVHPNIAIWLADAPQPVLEVMEDVAKKVVFDIHPNYKNIHQKIYVRINNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCGKCGTILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFSTVVEANYITKKQDLFSAYKLTQEDKDEIEKLSKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRFDILCVVKDVVDSVTDEMLAKFVVDSHFKSQPKGGNIDDKSINESQEDSQDSAGPLDSEVLPQDLLRKYITYSKLNVFPRLHDADMDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVRGSTSELTHINVKLEDLQSKAQEHEIYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLARTRTLWVGSCVKWGFKRPLWIFRDVNRGSEHIYRIWKAMGYCKG 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6029195 6035955 + CmoCh14G010780.1 Cmo14g01078 396344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01078 987 ProSitePatterns MCM family signature. 616 624 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cmo14g01078 987 Gene3D - 220 324 - -
Cmo14g01078 987 Gene3D - 328 453 IPR012340 -
Cmo14g01078 987 CDD MCM2 510 837 - -
Cmo14g01078 987 PRINTS Mini-chromosome maintenance (MCM) protein family signature 636 649 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo14g01078 987 PRINTS Mini-chromosome maintenance (MCM) protein family signature 687 695 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo14g01078 987 PRINTS Mini-chromosome maintenance (MCM) protein family signature 548 563 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo14g01078 987 PRINTS Mini-chromosome maintenance (MCM) protein family signature 660 672 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo14g01078 987 PRINTS Mini-chromosome maintenance (MCM) protein family signature 608 622 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo14g01078 987 MobiDBLite consensus disorder prediction 723 748 - -
Cmo14g01078 987 MobiDBLite consensus disorder prediction 8 37 - -
Cmo14g01078 987 Pfam MCM N-terminal domain 228 321 IPR027925 -
Cmo14g01078 987 PANTHER DNA HELICASE 148 939 - -
Cmo14g01078 987 SUPERFAMILY Nucleic acid-binding proteins 229 476 IPR012340 -
Cmo14g01078 987 MobiDBLite consensus disorder prediction 113 158 - -
Cmo14g01078 987 MobiDBLite consensus disorder prediction 113 203 - -
Cmo14g01078 987 MobiDBLite consensus disorder prediction 175 190 - -
Cmo14g01078 987 Gene3D - 487 861 IPR027417 -
Cmo14g01078 987 SMART mcm 324 839 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo14g01078 987 Pfam Mini-chromosome maintenance protein 2 44 199 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cmo14g01078 987 Pfam MCM OB domain 327 454 IPR033762 -
Cmo14g01078 987 Gene3D - 355 405 - -
Cmo14g01078 987 Coils Coil 985 987 - -
Cmo14g01078 987 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 148 939 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo14g01078 987 MobiDBLite consensus disorder prediction 1 68 - -
Cmo14g01078 987 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 337 354 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cmo14g01078 987 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 471 482 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cmo14g01078 987 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 360 372 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cmo14g01078 987 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 456 467 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cmo14g01078 987 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 395 409 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cmo14g01078 987 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 517 841 IPR027417 -
Cmo14g01078 987 Pfam MCM AAA-lid domain 754 838 IPR041562 -
Cmo14g01078 987 ProSiteProfiles MCM family domain profile. 507 713 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo14g01078 987 Pfam MCM P-loop domain 495 717 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01078 Cmo-Chr14:6029195 Cmo12g01194 Cmo-Chr12:10756150 3.08E-99 dispersed
Cmo19g00482 Cmo-Chr19:5739138 Cmo14g01078 Cmo-Chr14:6029195 8.24E-55 transposed
Cmo14g01078 Cmo-Chr14:6029195 Cmo06g01740 Cmo-Chr6:11928395 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01078 K02540 - csv:101219546 1731.84