Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01110 ATGTGCTCGACAGAGGAGGCAGCAGTTGATCTTCAACGGAGGATGCATTTACTTTATCATCTATCAGACGATTCCTTTGAGATCCCTCGGGGTCAGCCTTCTAGAGGAGGAGACATTGAGCTTGGAACAAATGCTCCTACAAGTGCAGGAGATCTGGGCTTGGATGATTTCTTTAAAAAGGTCCAAGATATTGAAAAACAGAATGAGAAGCTGGACAGGTTATTGCGAAAGCTCCAGGATTCACACGAGGAGTCCAAAGCTGTGACTAAAGCTCCAGCAATGAAAGCAATCAAGCAGCGAATGGAAAAGGATGTTGATGAAGTTGGAAAAGTTGCACGTTTTGTGAAGAGCAAGGTCGAAGAACTTGACAAGGAGAATCTGGCAAATAGGCAGAAGCCTGGATGTGGTAAAGGATCAGGTGTAGATAGATCAAGAACAGCAACTACTCTTTCCTTAAAAAAGAAGTTGAAAGACAAGATGACTGAGTTCCAGATTTTGCGGGAAAAAGTTCATCAAGAGTATCGGGAGGTTGTTGAGAGACGGGTTTTCACAGTCACGGGCACTAGGGCTGACGAAGAGACCATCGAGAAATTAATCGAAACTGGGGATAGCGAACAAATTTTTCAGAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGACACTCTAGCTGAAATTCAAGAGCGTCACAGCGCAGTTAGAGAACTGGAGAGGAAGTTACTCGAGCTACAGCAGGTATTTCTGGACATGGCTGTTTTGGTAGATGCACAGGGGGATATGCTCGACAATATCGAATCACATGTTACAAGTGCAGTAGATCATGTGCAACAAGGGAACACTGCACTTCAAAAGGCAAAGAAGCTTCAAAAGAATTCAAGGAAATGGATGTGCATTGCCATAATAATCCTTCTAATCATTGTTGTGGTGGTAGTAGTGGGAGTCCTAAAGCCATGGAATAGTGGTAAGGGTGCGTAA 978 44.07 MCSTEEAAVDLQRRMHLLYHLSDDSFEIPRGQPSRGGDIELGTNAPTSAGDLGLDDFFKKVQDIEKQNEKLDRLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARFVKSKVEELDKENLANRQKPGCGKGSGVDRSRTATTLSLKKKLKDKMTEFQILREKVHQEYREVVERRVFTVTGTRADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHSAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVVVVGVLKPWNSGKGA 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7488054 7497089 + CmoCh14G011100.1 Cmo14g01110 396376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01110 325 Gene3D - 51 178 - -
Cmo14g01110 325 CDD SynN 54 211 IPR006011 GO:0016020
Cmo14g01110 325 SMART tSNARE_6 219 286 IPR000727 -
Cmo14g01110 325 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 224 286 IPR000727 -
Cmo14g01110 325 SUPERFAMILY t-snare proteins 52 279 IPR010989 GO:0016020|GO:0016192
Cmo14g01110 325 Coils Coil 227 247 - -
Cmo14g01110 325 CDD SNARE_syntaxin1-like 223 285 - -
Cmo14g01110 325 SMART SynN_4 49 175 IPR006011 GO:0016020
Cmo14g01110 325 Coils Coil 54 88 - -
Cmo14g01110 325 PANTHER SYNTAXIN 24 316 IPR045242 -
Cmo14g01110 325 Pfam SNARE domain 260 312 IPR000727 -
Cmo14g01110 325 PANTHER - 24 316 - -
Cmo14g01110 325 Pfam Syntaxin 56 259 IPR006011 GO:0016020
Cmo14g01110 325 ProSitePatterns Syntaxin / epimorphin family signature. 230 269 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cmo14g01110 325 Gene3D - 214 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00163 Cmo-Chr2:782007 Cmo14g01110 Cmo-Chr14:7488054 1.88E-65 dispersed
Cmo14g01110 Cmo-Chr14:7488054 Cmo18g00322 Cmo-Chr18:2085688 1.65E-90 dispersed
Cmo14g01110 Cmo-Chr14:7488054 Cmo20g00615 Cmo-Chr20:3011939 3.06E-114 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01110 K08486 - csv:101203075 509.99