Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01136 ATGGCTACTTCCTTCAACTTTGTGTTCCTTTGGTTGAATTTTGCAGCCTTTTTGGCGGACCCCATAGCGTGTAGGCTCCTTGATCCCATTGGTATCCAAAAGAGCAACGGTGCATGGCGCAATGCTCATGCCACCTTCTACGGTGACATGGGGGGTGGCGAAACTATGCAGGGAGCTTGCGGGTATGGAAACCTACACGAACAAGGGTACGGGCTAGAGACGGCGGCGATAAGCACAGCACTTTTCAACAACGGTTTAACCTGTGGAGCATGCTTCGAGTTAAAGTGTCGGCCCGGAGGACACTATACGTGCCTACCAAACTCGGGCACAATCAAAATAACCGCCACAAACTTCTGCCCACCAAACTACACGAAAACAGTAGACATTTGGTGCAATCCACCCCAAGAGCACTTCGACCTTTCTCTCTACATGTTTACTAAAATCGCCCCTTATCGTGCTGGTGTCATCAATGTTCGCTACCGTAGGGTGCTTTGCCAGAAACAAGGTGGCGTCCGGTTCCAATTAAATGGGAACCCATATTGGCTAATCGTCCTACCCTTTAATGTTGGAGGCGCTGGTGATGTTGTTGGTGTTAACATTAAAGGCTCTTCTACTGGGTGGCTTAAGATGTCAAAGAACTGGGGCCAAAATTGGGAGACTGGTACCGTTTTTGTGGGCCAGAGCCTGTCCTTTCAAGTCACTACCAGTGATTCGAGGACCCTTCAATTCGATAACGTCGTGCCCAGCTCTTGGCAGTTCGGCCAAACCTTTGAAGGCAAGCGGAATTTCTAA 792 49.49 MATSFNFVFLWLNFAAFLADPIACRLLDPIGIQKSNGAWRNAHATFYGDMGGGETMQGACGYGNLHEQGYGLETAAISTALFNNGLTCGACFELKCRPGGHYTCLPNSGTIKITATNFCPPNYTKTVDIWCNPPQEHFDLSLYMFTKIAPYRAGVINVRYRRVLCQKQGGVRFQLNGNPYWLIVLPFNVGGAGDVVGVNIKGSSTGWLKMSKNWGQNWETGTVFVGQSLSFQVTTSDSRTLQFDNVVPSSWQFGQTFEGKRNF 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8019201 8020086 + CmoCh14G011360.1 Cmo14g01136 396402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01136 263 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576
Cmo14g01136 263 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Cmo14g01136 263 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
Cmo14g01136 263 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Cmo14g01136 263 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576
Cmo14g01136 263 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Cmo14g01136 263 PANTHER EXPANSIN-A15 36 263 IPR002963 GO:0009664
Cmo14g01136 263 SUPERFAMILY Barwin-like endoglucanases 11 188 IPR036908 -
Cmo14g01136 263 PRINTS Expansin signature 145 158 IPR002963 GO:0009664
Cmo14g01136 263 PRINTS Expansin signature 128 145 IPR002963 GO:0009664
Cmo14g01136 263 PRINTS Expansin signature 69 83 IPR002963 GO:0009664
Cmo14g01136 263 PRINTS Expansin signature 111 121 IPR002963 GO:0009664
Cmo14g01136 263 PRINTS Expansin signature 216 237 IPR002963 GO:0009664
Cmo14g01136 263 PRINTS Expansin signature 169 181 IPR002963 GO:0009664
Cmo14g01136 263 PRINTS Expansin signature 181 202 IPR002963 GO:0009664
Cmo14g01136 263 PRINTS Expansin signature 245 261 IPR002963 GO:0009664
Cmo14g01136 263 PANTHER EXPANSIN-A21-RELATED 36 263 - -
Cmo14g01136 263 Gene3D - 169 263 IPR036749 -
Cmo14g01136 263 Gene3D - 30 166 IPR036908 -
Cmo14g01136 263 SMART dpbb_1 74 160 IPR007112 -
Cmo14g01136 263 Pfam Expansin C-terminal domain 171 248 IPR007117 -
Cmo14g01136 263 Pfam Lytic transglycolase 74 160 IPR009009 -
Cmo14g01136 263 SUPERFAMILY PHL pollen allergen 167 259 IPR036749 -
Cmo14g01136 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 259 IPR007117 -
Cmo14g01136 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 170 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01136 Cmo-Chr14:8019201 Cmo03g00435 Cmo-Chr3:4977128 7.53E-99 dispersed
Cmo14g01136 Cmo-Chr14:8019201 Cmo14g01137 Cmo-Chr14:8065072 2.77E-171 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01136 - - cmos:111436984 526.939