Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01180 ATGGGAAGAGGCAGAGTTCAGCTGAAGAGAATAGAGAACAAAATCAGCCGCCAAGTCACCTTCTCAAAGCGTAGAGCTGGTTTGCTCAAAAAGGCCCATGAGATCTCTGTTCTTTGTGATGCAGATGTTGCTTTGATCGTCTTCTCCACCAAAGGCAAGCTCTTTGAGTACTCCTCTCATTCCAGCATGGAGAAAATCTTAGAAAAATATGAAAGATATTCTTATGCAGAGAGACCATTGGCCCCAAATCGAGATTCTGAGTCACAGGCAAGTTGGTGTCAGGAGTATCCAAAGCTTGCAGCCAGATTGGAGATTGTGCAGAAGAATTTAAGGCATTATTTGGGAGAAGAGCTTGACCCTTTGAATTTGAGAGAACTTCAAAGCTTGGAGCAACAACTTGATTCATCACTCAAGCGCATAAGAGCCAGAAAGGCAGACGTCGTTGCCCTCACTACCACCATTGTCACAAATAAAATGGCCATGGGGGAGAGGGGAGAAAAAGAGAAGACCACTGCAAAGGTTTGGTTTTTGAAGGTGTGA 540 44.44 MGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSTKGKLFEYSSHSSMEKILEKYERYSYAERPLAPNRDSESQASWCQEYPKLAARLEIVQKNLRHYLGEELDPLNLRELQSLEQQLDSSLKRIRARKADVVALTTTIVTNKMAMGERGEKEKTTAKVWFLKV 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9737822 9741601 - CmoCh14G011800.1 Cmo14g01180 396446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01180 179 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo14g01180 179 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Cmo14g01180 179 Pfam K-box region 86 149 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo14g01180 179 Coils Coil 123 146 - -
Cmo14g01180 179 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo14g01180 179 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo14g01180 179 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 149 - -
Cmo14g01180 179 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cmo14g01180 179 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Cmo14g01180 179 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo14g01180 179 PANTHER BNAA09G02740D PROTEIN 1 149 - -
Cmo14g01180 179 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo14g01180 179 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo14g01180 179 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo14g01180 179 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00455 Cmo14g01180 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00455 Cmo-Chr1:2180900 Cmo14g01180 Cmo-Chr14:9737822 2.34E-94 dispersed
Cmo14g01180 Cmo-Chr14:9737822 Cmo18g00019 Cmo-Chr18:78461 3.65E-74 dispersed
Cmo09g01305 Cmo-Chr9:11579332 Cmo14g01180 Cmo-Chr14:9737822 2.84E-30 transposed
Cmo01g00454 Cmo-Chr1:2174856 Cmo14g01180 Cmo-Chr14:9737822 7.05E-53 wgd
Cmo13g01103 Cmo-Chr13:9050079 Cmo14g01180 Cmo-Chr14:9737822 7.66E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11009 PF01486 K-box 1.50E-20 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01180 K09264 - csv:101218674 255.373