Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo14g01180 | ATGGGAAGAGGCAGAGTTCAGCTGAAGAGAATAGAGAACAAAATCAGCCGCCAAGTCACCTTCTCAAAGCGTAGAGCTGGTTTGCTCAAAAAGGCCCATGAGATCTCTGTTCTTTGTGATGCAGATGTTGCTTTGATCGTCTTCTCCACCAAAGGCAAGCTCTTTGAGTACTCCTCTCATTCCAGCATGGAGAAAATCTTAGAAAAATATGAAAGATATTCTTATGCAGAGAGACCATTGGCCCCAAATCGAGATTCTGAGTCACAGGCAAGTTGGTGTCAGGAGTATCCAAAGCTTGCAGCCAGATTGGAGATTGTGCAGAAGAATTTAAGGCATTATTTGGGAGAAGAGCTTGACCCTTTGAATTTGAGAGAACTTCAAAGCTTGGAGCAACAACTTGATTCATCACTCAAGCGCATAAGAGCCAGAAAGGCAGACGTCGTTGCCCTCACTACCACCATTGTCACAAATAAAATGGCCATGGGGGAGAGGGGAGAAAAAGAGAAGACCACTGCAAAGGTTTGGTTTTTGAAGGTGTGA | 540 | 44.44 | MGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSTKGKLFEYSSHSSMEKILEKYERYSYAERPLAPNRDSESQASWCQEYPKLAARLEIVQKNLRHYLGEELDPLNLRELQSLEQQLDSSLKRIRARKADVVALTTTIVTNKMAMGERGEKEKTTAKVWFLKV | 179 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 9737822 | 9741601 | - | CmoCh14G011800.1 | Cmo14g01180 | 396446 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo14g01180 | 179 | ProSiteProfiles | K-box domain profile. | 89 | 179 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cmo14g01180 | 179 | SUPERFAMILY | SRF-like | 2 | 80 | IPR036879 | GO:0003677|GO:0046983 | |
Cmo14g01180 | 179 | Pfam | K-box region | 86 | 149 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cmo14g01180 | 179 | Coils | Coil | 123 | 146 | - | - | |
Cmo14g01180 | 179 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo14g01180 | 179 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo14g01180 | 179 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 149 | - | - | |
Cmo14g01180 | 179 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Cmo14g01180 | 179 | Gene3D | - | 13 | 84 | IPR036879 | GO:0003677|GO:0046983 | |
Cmo14g01180 | 179 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo14g01180 | 179 | PANTHER | BNAA09G02740D PROTEIN | 1 | 149 | - | - | |
Cmo14g01180 | 179 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo14g01180 | 179 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo14g01180 | 179 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo14g01180 | 179 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo01g00455 | Cmo14g01180 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00455 | Cmo-Chr1:2180900 | Cmo14g01180 | Cmo-Chr14:9737822 | 2.34E-94 | dispersed | |
Cmo14g01180 | Cmo-Chr14:9737822 | Cmo18g00019 | Cmo-Chr18:78461 | 3.65E-74 | dispersed | |
Cmo09g01305 | Cmo-Chr9:11579332 | Cmo14g01180 | Cmo-Chr14:9737822 | 2.84E-30 | transposed | |
Cmo01g00454 | Cmo-Chr1:2174856 | Cmo14g01180 | Cmo-Chr14:9737822 | 7.05E-53 | wgd | |
Cmo13g01103 | Cmo-Chr13:9050079 | Cmo14g01180 | Cmo-Chr14:9737822 | 7.66E-73 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11009 | PF01486 | K-box | 1.50E-20 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo14g01180 | K09264 | - | csv:101218674 | 255.373 |