Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01181 ATGGGAAGAGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACATTTGCAAAGAGAAGAAATGGGCTTTTGAAGAAGGCTTATGAGCTGTCTGTTCTTTGTGATGCGGAGGTTGCTCTTATCATCTTCTCCAATCGTGGCAAGCTCTATGAGTTCTGCAGCACTTCCAACATGCTCAAAACCCTTGAGAGGTACCAGAAATGCAGCTATGGAGCTGTGGAGGTCACCAAACCTGCCAAAGAACTCGAGAGTAGCTATAGAGAATACTTGAAGCTCAAGGCTAGGTTTGAGTCTCTTCAAACAACTCAGCGCTTTTTAAAAGGGAATTCACCAAATAAAGGAAAAATACATGTAATTATAACCAATGGTCATCAGAGTGTGCTTACCATATTTGGTTATAATAAACATGAACATGAACATGCTGACATCTCTCTTACATGGATAGAATTTAGGGTTGAAAAGTGTTATTTGTGTTATGGTAGAAATCTTCTTGGTGAGGACTTGGGTCCATTGAACTCAAAAGAGCTTGAGCAGCTGGAGCGTCAGCTGGAGTCTTCTTTGAAGCAAGTTAGGTCCACTAAGACTCAGTACATGCTGGACCAGCTATCTGATCTACAGAACAAGGAACAAATGCTGATTGAAACCAACAGAGCTCTGCAGATCAAGTTGGAAGAAATAAGTTCAAGAAATAACATAAGGCTAACATGGGAAGCTGGAGACCAAAGCATGTCATATGCTCCACAAGATGCCCAAACTCAAGGCTTCTTTCAGGCACTGGATTGCAATCCCACTTTGCAAATTGGGTACACTTCTGCAGTGTCGGACCAAATTACAGCCACCACTGCCCCAACTCATGCCCAACAAGTCAATGGCTTCCTCCCTGGTTGGATGCTTTGA 912 42.98 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKARFESLQTTQRFLKGNSPNKGKIHVIITNGHQSVLTIFGYNKHEHEHADISLTWIEFRVEKCYLCYGRNLLGEDLGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRALQIKLEEISSRNNIRLTWEAGDQSMSYAPQDAQTQGFFQALDCNPTLQIGYTSAVSDQITATTAPTHAQQVNGFLPGWML 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9787590 9791430 - CmoCh14G011810.1 Cmo14g01181 396447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01181 303 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 165 288 - -
Cmo14g01181 303 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 114 - -
Cmo14g01181 303 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo14g01181 303 PANTHER SERUM RESPONSE FACTOR HOMOLOG 165 288 - -
Cmo14g01181 303 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo14g01181 303 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo14g01181 303 Coils Coil 207 227 - -
Cmo14g01181 303 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cmo14g01181 303 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo14g01181 303 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Cmo14g01181 303 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Cmo14g01181 303 ProSiteProfiles K-box domain profile. 138 234 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo14g01181 303 Coils Coil 178 201 - -
Cmo14g01181 303 Pfam K-box region 166 228 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo14g01181 303 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 114 - -
Cmo14g01181 303 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo14g01181 303 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo14g01181 303 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00454 Cmo14g01181 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01181 Cmo-Chr14:9787590 Cmo17g01377 Cmo-Chr17:10695432 1.50E-86 dispersed
Cmo14g01181 Cmo-Chr14:9787590 Cmo08g00175 Cmo-Chr8:1016886 5.38E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11010 PF01486 K-box 3.60E-20 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01181 K09264 - gmx:100786066 345.895