Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01212 ATGCAACTGGTACCAAATAATGATGAAAATACAGATGATATTCTGGAACGTGCGCCCATTTTAAGTCAATTGGATTTTCTGCCACAGTCAGTGGGATCATCATCCTCTGCTGAGATTATAGCTATAGGTAGAGAGAGCTCTGGTAGTGATGATGATTCACACAATCTTAATGTTGATGAAACCAGTCATCTGGTGAATGCAGACCAACCACAATGTCGTATATGCCTTGACACTGGAGGAGAAGATTTAATTGCTCCATGCCACTGCAAAGGCACTCAAAAGTATGTCCATAGATCATGTCTTGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCGTGTTACGTGCAAATGTCCCTTCTGATCGCTGGTGGTTGAGACTGAAGTTTCAATTTCTTGTTGCTAGGGACCATGCGTTCATTTTCATTATTGTTCAACTGATTGTGGCATTCTTGGGGGTGTTGGTGTACAAATTCTACGGAGAGGAACTAAGGGAAATGTTTGGTTATGAAGAACACCCATATGGGTTCTATGCCATGGCTGTCTTGGCGATCATCTTGGTTGGCTTACTCTATGGTTTCTTCATAGCCATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTTGCTAAGCAAGAACTGACAAAGGAATATATAGTTGAAGATCGAGAACATAACAAGAACGTTCCTGAATTAGACCCCAGCCATGTTATGGAGCTAAGGATGTTGGGGCTGTATTAA 780 42.31 MQLVPNNDENTDDILERAPILSQLDFLPQSVGSSSSAEIIAIGRESSGSDDDSHNLNVDETSHLVNADQPQCRICLDTGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFVLRANVPSDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLY 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10324732 10327173 + CmoCh14G012120.1 Cmo14g01212 396478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01212 259 PANTHER OS02G0132300 PROTEIN 2 258 - -
Cmo14g01212 259 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 258 - -
Cmo14g01212 259 Pfam RING-variant domain 72 119 IPR011016 GO:0008270
Cmo14g01212 259 SUPERFAMILY RING/U-box 67 123 - -
Cmo14g01212 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 132 IPR013083 -
Cmo14g01212 259 CDD RING_CH-C4HC3_MARCH 72 120 - -
Cmo14g01212 259 ProSiteProfiles Zinc finger RING-CH-type profile. 64 126 IPR011016 GO:0008270
Cmo14g01212 259 SMART ringv_2 71 120 IPR011016 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00622 Cmo-Chr10:2817436 Cmo14g01212 Cmo-Chr14:10324732 1.01E-40 dispersed
Cmo11g00552 Cmo-Chr11:2687384 Cmo14g01212 Cmo-Chr14:10324732 2.55E-32 dispersed
Cmo01g00002 Cmo-Chr1:6280 Cmo14g01212 Cmo-Chr14:10324732 2.03E-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01212 - - bhj:120075028 498.049