Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01244 ATGCTTCATTCCGTAATAGCTGCTAGACAAACTTGTAGCCTACTTGCTGTCACTTGCGGAAGTGTTCTTAAAGCGAAATGCGAGGAAGATGTCGATGAGGATAAGTTGAAATATCCGTTTCCGGGATTAGTTTCTTCTGGACGATTGGAGGTTCGAGCTTTGACAAATCCAAGCACGGATGAATTTAGTAGAATTGTGGAATCGTGTCTACCGAGCTTTGTCTACTTGCAAGGGGAACAACTAGGAAATGATGAAATTGGATCTTTGGTTTGGAATGGTGTTGATTTGTTTCTTGAAGATTTATGTGGGCTGTTCAATACTGCACTACCAACTGTTGTGTATTTAGAAATCCCAAATGGAGGCAGAATAGCGGAGGCGCTTCATTCTAAGGGAATTCCTTATGTCATGTATTGGAACAGCACATTTTCGTGTTATGCTGCAGCTCATTTTCGTAATGCATTGTTTTCAGTGTTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACGTGCTGCTTTTAGGCTTCATTGCATGGGGAGCAGTCACGCTCTGCCTGGGATTGTTGACAGTATTACGAGTGGTTTAGAGCCACAGGTATTTGGGGAACCCCTAAAGATTAATGTAGAACCCCCCAAGGTCGACGTAGGTGAAGGTGAAGATGAAGATGGTTCATTAGAAACTCTCACTGCCATAAGTATTCACGATAATAATGTGACCGTGAGATTTCTTATCTGTGGAGTGCCTTGCACACCGGATGCATGCTTATTGAGATCATTGGAGGATGGCCTTAATGCTCTTTTGAACATTGAAATACGTGGGTGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCGCCACCTCTTCAGGCAGGATCCTTTGCTCGTGGAGTTGTGACGATGCGGTGTGATATAGTGACTTGTAGTTCAGCCCACATCTCAATATTGGTGTCTGGTAGCCCTCATACTTGTTTTGATGATCAGCTCTTAGAGAAACATATCAAACACGAGATTATTGAAAATAACCAGTTGGTTCATGCCATGTATGATTGTGAGGACAACAAACATCACATGCACGAGCCTCGAAAATCTGCTTCAGTTGCCTGTGGGGCAACAGTATTTGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAGCTAGCACCTGATATGTCGTATCGGAGTTTAGTTGCACTCGGCATTGGGGGAGTTCAGGGTTTGCCTGTTGCTTCTTTCGAGAAAGAGGATGCTGAGCGATTGCTCTTCTTTTGTTCAAAAGATGTGAATGATAAACATTCAGATCAGTTGCTTGTAAGTGTATTACCCAGCTGGTTTAAGCCACCGCCTCCTAGTAGAAAGAGAGTAGAACCAAGCCAAGGAATACGGAGCACCCTTTCACACGATCGTCTTGCATATGCAAACATCCCTTTCATTAGAAGAGTAGGTAGAGAGGAGCCTGCACCAATGAATGGGTTCAAGACACCTTTACTCGCAACAAGGAAAAGATTAAAAGTAGCCTCCATGAGGCCTATTCCACGCGTGCATAGGAATAAAATGACGCCGTTCTCTGGATTGACCGAAGCAGATGGGAACAATGGAGGACAACCCAAGGCTTGTTTTCCTGTTGTTACCCCATCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACAAAGAAAATCCTTTTCGAGCTCATCTCAGTCTAAGCAGATTATTTCCTTAAACCCGCTGCCTCTAAAGAAGCATGGTTGTGGAAGAAACCCAATTCAAGATTGCTCAGAGGAGGAGTTCTTGAAGGATGTTATGGAGTTTCTACTACTTAGAGGACATTCACGACTTATACCTCAAGGTGGACTTGAGGAGTTCCCAGACGCCATACTCAACGGAAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACTCGAGGAGGCTTTCATGTCGGTAACGGTATCAACTGGAAAGGGCAGATCTTCTCTAAGATGCATAACTACACAATGTCCAACAGAATGACTGGTGTCGGAAATACACTGAAACGACATTACGAGACGTACCTTCTCGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGCCTTTTGTGCCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCTCATTTCGGGTGCGATCGAAGGCAGGGTCTCGGTGCATTTAAGGATTATGCCAAAACAGATGGGCTAGAGTATGTTTGTCCACATTGTAGCATTACAACTTACAACAAGAAGAAACCACACAGAGTAGCAAACGGGTCTCCGCAAGGACTAACGAATCCACCACGGATACCTTGA 2358 44.53 MLHSVIAARQTCSLLAVTCGSVLKAKCEEDVDEDKLKYPFPGLVSSGRLEVRALTNPSTDEFSRIVESCLPSFVYLQGEQLGNDEIGSLVWNGVDLFLEDLCGLFNTALPTVVYLEIPNGGRIAEALHSKGIPYVMYWNSTFSCYAAAHFRNALFSVLQSSSTHTWDAFQLARAAFRLHCMGSSHALPGIVDSITSGLEPQVFGEPLKINVEPPKVDVGEGEDEDGSLETLTAISIHDNNVTVRFLICGVPCTPDACLLRSLEDGLNALLNIEIRGCKLQGKFSAPPPPLQAGSFARGVVTMRCDIVTCSSAHISILVSGSPHTCFDDQLLEKHIKHEIIENNQLVHAMYDCEDNKHHMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGIGGVQGLPVASFEKEDAERLLFFCSKDVNDKHSDQLLVSVLPSWFKPPPPSRKRVEPSQGIRSTLSHDRLAYANIPFIRRVGREEPAPMNGFKTPLLATRKRLKVASMRPIPRVHRNKMTPFSGLTEADGNNGGQPKACFPVVTPSKHVTVGSTSATQRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHSRLIPQGGLEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMSNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYNKKKPHRVANGSPQGLTNPPRIP 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10511944 10518807 - CmoCh14G012440.1 Cmo14g01244 396510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01244 785 CDD PHD_ARID4_like 706 757 - -
Cmo14g01244 785 SUPERFAMILY FYVE/PHD zinc finger 699 764 IPR011011 -
Cmo14g01244 785 SMART ARID_2 593 696 - -
Cmo14g01244 785 Gene3D - 571 706 IPR036431 GO:0003677
Cmo14g01244 785 ProSiteProfiles ARID domain profile. 596 700 IPR001606 GO:0003677
Cmo14g01244 785 SUPERFAMILY ARID-like 596 711 IPR036431 GO:0003677
Cmo14g01244 785 Pfam ARID/BRIGHT DNA binding domain 599 696 IPR001606 GO:0003677
Cmo14g01244 785 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 3 773 IPR042293 -
Cmo14g01244 785 SMART bright_3 597 701 IPR001606 GO:0003677
Cmo14g01244 785 CDD ARID 598 696 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00019 Cmo-Chr1:63358 Cmo14g01244 Cmo-Chr14:10511944 0 wgd
Cmo14g01244 Cmo-Chr14:10511944 Cmo17g00636 Cmo-Chr17:6639372 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11014 PF01388 ARID 7.20E-14 CL0123 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01244 - - cmax:111479879 1556.58