Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01244 ATGCTTCATTCCGTAATAGCTGCTAGACAAACTTGTAGCCTACTTGCTGTCACTTGCGGAAGTGTTCTTAAAGCGAAATGCGAGGAAGATGTCGATGAGGATAAGTTGAAATATCCGTTTCCGGGATTAGTTTCTTCTGGACGATTGGAGGTTCGAGCTTTGACAAATCCAAGCACGGATGAATTTAGTAGAATTGTGGAATCGTGTCTACCGAGCTTTGTCTACTTGCAAGGGGAACAACTAGGAAATGATGAAATTGGATCTTTGGTTTGGAATGGTGTTGATTTGTTTCTTGAAGATTTATGTGGGCTGTTCAATACTGCACTACCAACTGTTGTGTATTTAGAAATCCCAAATGGAGGCAGAATAGCGGAGGCGCTTCATTCTAAGGGAATTCCTTATGTCATGTATTGGAACAGCACATTTTCGTGTTATGCTGCAGCTCATTTTCGTAATGCATTGTTTTCAGTGTTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACGTGCTGCTTTTAGGCTTCATTGCATGGGGAGCAGTCACGCTCTGCCTGGGATTGTTGACAGTATTACGAGTGGTTTAGAGCCACAGGTATTTGGGGAACCCCTAAAGATTAATGTAGAACCCCCCAAGGTCGACGTAGGTGAAGGTGAAGATGAAGATGGTTCATTAGAAACTCTCACTGCCATAAGTATTCACGATAATAATGTGACCGTGAGATTTCTTATCTGTGGAGTGCCTTGCACACCGGATGCATGCTTATTGAGATCATTGGAGGATGGCCTTAATGCTCTTTTGAACATTGAAATACGTGGGTGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCGCCACCTCTTCAGGCAGGATCCTTTGCTCGTGGAGTTGTGACGATGCGGTGTGATATAGTGACTTGTAGTTCAGCCCACATCTCAATATTGGTGTCTGGTAGCCCTCATACTTGTTTTGATGATCAGCTCTTAGAGAAACATATCAAACACGAGATTATTGAAAATAACCAGTTGGTTCATGCCATGTATGATTGTGAGGACAACAAACATCACATGCACGAGCCTCGAAAATCTGCTTCAGTTGCCTGTGGGGCAACAGTATTTGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAGCTAGCACCTGATATGTCGTATCGGAGTTTAGTTGCACTCGGCATTGGGGGAGTTCAGGGTTTGCCTGTTGCTTCTTTCGAGAAAGAGGATGCTGAGCGATTGCTCTTCTTTTGTTCAAAAGATGTGAATGATAAACATTCAGATCAGTTGCTTGTAAGTGTATTACCCAGCTGGTTTAAGCCACCGCCTCCTAGTAGAAAGAGAGTAGAACCAAGCCAAGGAATACGGAGCACCCTTTCACACGATCGTCTTGCATATGCAAACATCCCTTTCATTAGAAGAGTAGGTAGAGAGGAGCCTGCACCAATGAATGGGTTCAAGACACCTTTACTCGCAACAAGGAAAAGATTAAAAGTAGCCTCCATGAGGCCTATTCCACGCGTGCATAGGAATAAAATGACGCCGTTCTCTGGATTGACCGAAGCAGATGGGAACAATGGAGGACAACCCAAGGCTTGTTTTCCTGTTGTTACCCCATCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACAAAGAAAATCCTTTTCGAGCTCATCTCAGTCTAAGCAGATTATTTCCTTAAACCCGCTGCCTCTAAAGAAGCATGGTTGTGGAAGAAACCCAATTCAAGATTGCTCAGAGGAGGAGTTCTTGAAGGATGTTATGGAGTTTCTACTACTTAGAGGACATTCACGACTTATACCTCAAGGTGGACTTGAGGAGTTCCCAGACGCCATACTCAACGGAAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACTCGAGGAGGCTTTCATGTCGGTAACGGTATCAACTGGAAAGGGCAGATCTTCTCTAAGATGCATAACTACACAATGTCCAACAGAATGACTGGTGTCGGAAATACACTGAAACGACATTACGAGACGTACCTTCTCGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGCCTTTTGTGCCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCTCATTTCGGGTGCGATCGAAGGCAGGGTCTCGGTGCATTTAAGGATTATGCCAAAACAGATGGGCTAGAGTATGTTTGTCCACATTGTAGCATTACAACTTACAACAAGAAGAAACCACACAGAGTAGCAAACGGGTCTCCGCAAGGACTAACGAATCCACCACGGATACCTTGA 2358 44.53 MLHSVIAARQTCSLLAVTCGSVLKAKCEEDVDEDKLKYPFPGLVSSGRLEVRALTNPSTDEFSRIVESCLPSFVYLQGEQLGNDEIGSLVWNGVDLFLEDLCGLFNTALPTVVYLEIPNGGRIAEALHSKGIPYVMYWNSTFSCYAAAHFRNALFSVLQSSSTHTWDAFQLARAAFRLHCMGSSHALPGIVDSITSGLEPQVFGEPLKINVEPPKVDVGEGEDEDGSLETLTAISIHDNNVTVRFLICGVPCTPDACLLRSLEDGLNALLNIEIRGCKLQGKFSAPPPPLQAGSFARGVVTMRCDIVTCSSAHISILVSGSPHTCFDDQLLEKHIKHEIIENNQLVHAMYDCEDNKHHMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGIGGVQGLPVASFEKEDAERLLFFCSKDVNDKHSDQLLVSVLPSWFKPPPPSRKRVEPSQGIRSTLSHDRLAYANIPFIRRVGREEPAPMNGFKTPLLATRKRLKVASMRPIPRVHRNKMTPFSGLTEADGNNGGQPKACFPVVTPSKHVTVGSTSATQRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHSRLIPQGGLEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMSNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYNKKKPHRVANGSPQGLTNPPRIP 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10511944 10518807 - CmoCh14G012440.1 Cmo14g01244 396510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01244 785 CDD PHD_ARID4_like 706 757 - -
Cmo14g01244 785 SUPERFAMILY FYVE/PHD zinc finger 699 764 IPR011011 -
Cmo14g01244 785 SMART ARID_2 593 696 - -
Cmo14g01244 785 Gene3D - 571 706 IPR036431 GO:0003677
Cmo14g01244 785 ProSiteProfiles ARID domain profile. 596 700 IPR001606 GO:0003677
Cmo14g01244 785 SUPERFAMILY ARID-like 596 711 IPR036431 GO:0003677
Cmo14g01244 785 Pfam ARID/BRIGHT DNA binding domain 599 696 IPR001606 GO:0003677
Cmo14g01244 785 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 3 773 IPR042293 -
Cmo14g01244 785 SMART bright_3 597 701 IPR001606 GO:0003677
Cmo14g01244 785 CDD ARID 598 696 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01244 - - - cmax:111479879 1556.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00019 Cmo-Chr1:63358 Cmo14g01244 Cmo-Chr14:10511944 0 wgd
Cmo14g01244 Cmo-Chr14:10511944 Cmo17g00636 Cmo-Chr17:6639372 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo17g00098 . 1 358 ARID Transcription Factor Family AT1G04880 56.5 7.3e-106 381.7
Cmo08g00997 . 45 384 ARID Transcription Factor Family AT1G04880 59.7 5.8e-103 372.1
Cmo06g00165 . 1576 1847 ARID Transcription Factor Family AT1G20910 59.7 1.0e-87 321.2
Cmo01g02101 . 144 452 ARID Transcription Factor Family AT1G20910 53.4 9.0e-76 281.6
Cmo09g00078 CST 16 315 ARID Transcription Factor Family AT1G76110 67.1 1.2e-113 407.1
Cmo01g02054 CST 16 363 ARID Transcription Factor Family AT1G76110 58.4 2.5e-106 382.9
Cmo06g00165 . 1567 1876 ARID Transcription Factor Family AT1G76510 60.3 1.9e-103 373.6
Cmo01g02101 . 143 482 ARID Transcription Factor Family AT1G76510 58.8 1.5e-95 347.4
Cmo01g00019 CCT,ECH 1 771 ARID Transcription Factor Family AT3G43240 59.1 6.0e-262 901.0
Cmo14g01244 . 1 781 ARID Transcription Factor Family AT3G43240 58.2 3.6e-259 891.7
Cmo17g00636 CCT,ECH 2 771 ARID Transcription Factor Family AT3G43240 56.6 5.1e-253 871.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11014 PF01388 ARID 7.20E-14 CL0123 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01244 Cmo_Chr14 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0