Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01248 ATGGATTCCGTCAAGTCCTTCAAGGGCTACGGCAAGGTCGACGAGCTCGAACACCAAGCTTTCCGTCAGAAAACTCGCCGCCGACTCATTATACTACTTCTCTCTATTGTTCTTCTTATTGCTTTGGTCATCGGCGCCGTCGTCGGAATCGTCATTCATAAACGGAACTCTTCCTCTTCTTCGACCACGAGTTCGACTCCTCCCACTGAGCTCCCTCCGGCCGCTTCACTCAAAACTCTCTGTAGCGTCACTCAGTATCCGAGTTCCTGTCAATCCTCTCTCGAAAACTCCAACACCACCGATCCGATATTTCTCTTCAAGCTTTCTCTCCGAGTCGCCACCGATTCGATCTCAAAACTCTCTGATTATGCCTCTAACCTAAATTCCAGTACTAGTGATGTGAAGGTTAAAGCTGCGATTGGAATCTGCTCGTCTGTTTTTAAAGATGCCATTGACACACTAAACGACACCGTTTCATCCATGGAAGTGGATCGCCATGGCGAGAAGTTCTTGTCGCCGTCGAGGATTGAAGATCTGAAAACCTGGCTGAGCACCACAATCACAGACCAAGAAACCTGCCTCGATGCCATTCGAGATCTAAACCAGACCGCGGTTCTCGAAAATTTGCAAGCGGTAATGGCGAACTCGACCGAGTTCACTAGCAATAGTTTAGCGATTGTGACCAAAATCCTGGGGCTGTTGGCGGATTTCAACATCCCTATCCACCGGAAACTGATGGCGTTCCCGGAGTGGTTAAGCCCCGGCGATCGGAGGCTTTTGCAGGAGAACAATGTGACGGTGCATGCGACGGTGTCGAAGGATGGGACAGGGGATTTCACGACGATCAAAGAGGCCGTAGCAGCGGTGCCAAAGAAGAGTAAAGAAAGATTCATCATCTATGTAAAAGAAGGATTATACGAAGAGAATGTGATTCTGGATAAGAGCAAGTGGAATGTTATGATGTACGGAGATGGCAAAACCAGAACCATTGTTTCAGGCCGCCTTAACTTCATCGACGGCACTCCCACCTACGCCACCGCCACTTTTGCTGTTCAAGGCAAGGGATTCATCGGGAAGGATATGGGGTTCATCAACACAGCCGGGCCGGCCAAACACCAGGCTGTCGCCTTCCGGTCAGGCTCCGACCTATCTGTGATGTACGGATGTTCATTTGATGGCTATCAAGACACTCTTTACGCCCATTCAAACCGTCAATTCTACAGGAACTGCGACATCACCGGCACAATCGACTTCATCTTCGGCAACGCCGCCGTGGTATTCCAGAACTGCAACATCCGGCCCAGGCAGCCACTTCCCAATCAGTTCAACACCATCACAGCCCAAGGCAAAAAGGACATCAACCAAAACTCCGGCATTTCCATTCAGAAATGCACTTTTTCTGCCTACAACGACAGTCTCACTGCCCCCACTTACTTGGGGCGGCCATGGAAGGAATTTTCCACCACCGTGATTATGCAGTCGGAGATTGGGGGCTTCCTGCAGCCCATCGGGTGGAAGGAATGGGTGAGCGGGCAGGACCCACCCAGCAGCATATTTTACGGAGAGTATCAGAATAGTGGGCCTGGATCCAACGTGGACAAGAGGGTCAAATGGACCGGTTACAGGCCCAGTCTTACCGACGCCGAGGCCGCAAAGTTCACCGTCCGGACGTTCCTCAACGGCGAGGAATGGTTGCCGGCCACCAGTGTAAAATTTGATACATCCTTGTGA 1731 51.01 MDSVKSFKGYGKVDELEHQAFRQKTRRRLIILLLSIVLLIALVIGAVVGIVIHKRNSSSSSTTSSTPPTELPPAASLKTLCSVTQYPSSCQSSLENSNTTDPIFLFKLSLRVATDSISKLSDYASNLNSSTSDVKVKAAIGICSSVFKDAIDTLNDTVSSMEVDRHGEKFLSPSRIEDLKTWLSTTITDQETCLDAIRDLNQTAVLENLQAVMANSTEFTSNSLAIVTKILGLLADFNIPIHRKLMAFPEWLSPGDRRLLQENNVTVHATVSKDGTGDFTTIKEAVAAVPKKSKERFIIYVKEGLYEENVILDKSKWNVMMYGDGKTRTIVSGRLNFIDGTPTYATATFAVQGKGFIGKDMGFINTAGPAKHQAVAFRSGSDLSVMYGCSFDGYQDTLYAHSNRQFYRNCDITGTIDFIFGNAAVVFQNCNIRPRQPLPNQFNTITAQGKKDINQNSGISIQKCTFSAYNDSLTAPTYLGRPWKEFSTTVIMQSEIGGFLQPIGWKEWVSGQDPPSSIFYGEYQNSGPGSNVDKRVKWTGYRPSLTDAEAAKFTVRTFLNGEEWLPATSVKFDTSL 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10533283 10535716 - CmoCh14G012480.1 Cmo14g01248 396514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01248 576 Pfam Pectinesterase 269 561 IPR000070 GO:0030599|GO:0042545
Cmo14g01248 576 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Cmo14g01248 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 231 IPR035513 -
Cmo14g01248 576 PANTHER PECTINESTERASE 1-RELATED 8 573 - -
Cmo14g01248 576 SMART PMEI_2 72 226 IPR006501 GO:0004857
Cmo14g01248 576 TIGRFAM PME_inhib: pectinesterase inhibitor domain 57 230 IPR006501 GO:0004857
Cmo14g01248 576 CDD PMEI-like_3 79 230 - -
Cmo14g01248 576 Pfam Plant invertase/pectin methylesterase inhibitor 77 226 IPR006501 GO:0004857
Cmo14g01248 576 SUPERFAMILY Pectin lyase-like 268 572 IPR011050 -
Cmo14g01248 576 Gene3D - 262 576 IPR012334 -
Cmo14g01248 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 231 IPR035513 -
Cmo14g01248 576 PANTHER PECTINESTERASE 8 573 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01248 Cmo-Chr14:10533283 Cmo08g01213 Cmo-Chr8:7701057 4.35E-140 dispersed
Cmo13g00518 Cmo-Chr13:6084982 Cmo14g01248 Cmo-Chr14:10533283 2.85E-165 transposed
Cmo13g01172 Cmo-Chr13:9370936 Cmo14g01248 Cmo-Chr14:10533283 1.34E-28 transposed
Cmo14g01248 Cmo-Chr14:10533283 Cmo17g00631 Cmo-Chr17:6599797 5.14E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01248 - - csv:101207508 1007.28