Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01249 ATGGCACAAACCGACGACTCCACCGTCGCCGGAGCACCCATCACCGGCTGCCCCACTTCCATCTCCAACAAAAAGCACAATCTCTTCATTATAGTCCTCTCAGCCGCGCTTCTCCTCGCCGGCGTCTCATCGGAAGACCACGTGACCGCCGTGAGAAGCACGTGCGCGGTCACTCTGTATCCCGAGCTATGCCAGTCGACGATATCCACCGCCGTGGAAACCAGCTCGAAGAAGGTGTCGAGTTCAAAAGACATAATCGAAGCGTCGGTAAACATCACGATTTCTGCAGTGAAACAAAACTATAAAAGCATCAAGAAATTGCTTGAAACGACGAAGCATCTGACAAAGCGAGAGAAAATTGCGCTCCATGACTGTCTGGAAACAGGGGAGGAGACGCTAAGAGAGCTGTACGAGGTAGTGGAAGATCTCAATGAGTATCCCAAAAAGAAATCTCTGCCCCAATACGCCGATGACCTCAAAACCTTACTCAGTTCCGCCATTACTAATCAGGAAACATGCGTGGACGGATTTTCACACGACAGAGCCGACAAGAAGGTACGAGAATCATTGCTAGCAGGCCAATTTCATGTCGAGAAATTGTGCAGCGTTGCCTTAGCCTTGATTAAGAATCTCACCGACACCGACATTGCCAATCATTACAACATCCGAGGAAGGTCCATGGCCATGTCGGAATTTAATTGGCCGGATTGGATGTCGCCCGGTGACCGGAAGCTTTTGCAAGCCTCGTCTACGGCGACTCCGGACGCAGTAGTGGCAGCTGATGGGAGTGGCGATTTCCAGACGGTGTCAGCGGCTGTTGCGGCGGCGCCGAGTAGGAGTAGCCGGAGGTATATAATAAGAATTAAGGCGGGGGTTTATAGGGAAAATGTGAATGTGCCGAGTAGTAAGACGAATATAATGTTTTGGGGAGATGGAAGAACCACCACCATAATCACCGGGAACAGGAATGTCGTCGACGGCAGCACCACCTTCAACTCCGCCACCGTTGCGGCGGTGGGAGGAAGGTTCTTGGCGAGAGATATTACGTTCCAGAACACCGCCGGTCCATCGAAGCACCAAGCGGTGGCTCTCCGCGTCGGCTCCGACCTCTCAGCCTTTTACCGCTGCGACATGCTCGCTTATCAAGACACGCTTTACGTCCACTCCAACCGTCAATTCTACGTCAGCTGCATCATCGTCGGCACCGTTGACTTCATCTTCGGCAATGCGGCTGCCGTCATTCAAAACTCCGACATCCACGCCCGCCGCCCCAATCCCGGCCAGAAGAATATGGTCACTGCACAGGGAAGAACCGACCCAAATCAGAACACCGGGATCGTCATCCAGAAATGCCGAATCGGAACCACCTCCGATTTGCAGCCGGTGATCAGAAATTTCCCCACGTTTCTGGGGCGGCCGTGGCAGAGGTACTCGAGGACGGTGGTTATGCAGACGAGCATTAGCAATGTGATTGATCCGGCGGGATGGCACATTTGGGATGGGAATTTTGCGCTTGATACTCTGTTTTATGCAGAGTATCAGAATAATGGGGCCGGTGCTGATACCTCCAGAAGAGTGACGTGGAAGGGGTACAGGATTATTAGCAGTGCGGCGGAAGCTGAGAGCTTCACGGCTGGGAAGTTCATCAGCGGCGGCACGTGGCTGAGCTCCACCGGATTCCCATTTTCACTTGGACTGTAG 1701 53.09 MAQTDDSTVAGAPITGCPTSISNKKHNLFIIVLSAALLLAGVSSEDHVTAVRSTCAVTLYPELCQSTISTAVETSSKKVSSSKDIIEASVNITISAVKQNYKSIKKLLETTKHLTKREKIALHDCLETGEETLRELYEVVEDLNEYPKKKSLPQYADDLKTLLSSAITNQETCVDGFSHDRADKKVRESLLAGQFHVEKLCSVALALIKNLTDTDIANHYNIRGRSMAMSEFNWPDWMSPGDRKLLQASSTATPDAVVAADGSGDFQTVSAAVAAAPSRSSRRYIIRIKAGVYRENVNVPSSKTNIMFWGDGRTTTIITGNRNVVDGSTTFNSATVAAVGGRFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSNRQFYVSCIIVGTVDFIFGNAAAVIQNSDIHARRPNPGQKNMVTAQGRTDPNQNTGIVIQKCRIGTTSDLQPVIRNFPTFLGRPWQRYSRTVVMQTSISNVIDPAGWHIWDGNFALDTLFYAEYQNNGAGADTSRRVTWKGYRIISSAAEAESFTAGKFISGGTWLSSTGFPFSLGL 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10538568 10541633 - CmoCh14G012490.1 Cmo14g01249 396515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01249 566 SMART PMEI_2 46 207 IPR006501 GO:0004857
Cmo14g01249 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 212 IPR035513 -
Cmo14g01249 566 SUPERFAMILY Pectin lyase-like 249 565 IPR011050 -
Cmo14g01249 566 CDD PMEI-like_3 53 212 - -
Cmo14g01249 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 213 IPR035513 -
Cmo14g01249 566 Pfam Pectinesterase 255 551 IPR000070 GO:0030599|GO:0042545
Cmo14g01249 566 PANTHER PECTINESTERASE 46 565 - -
Cmo14g01249 566 ProSitePatterns Pectinesterase signature 1. 280 299 IPR018040 -
Cmo14g01249 566 Pfam Plant invertase/pectin methylesterase inhibitor 50 207 IPR006501 GO:0004857
Cmo14g01249 566 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Cmo14g01249 566 PANTHER PECTINESTERASE 46 565 - -
Cmo14g01249 566 Gene3D - 249 566 IPR012334 -
Cmo14g01249 566 TIGRFAM PME_inhib: pectinesterase inhibitor domain 30 212 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01249 Cmo-Chr14:10538568 Cmo17g01039 Cmo-Chr17:8822967 2.42E-159 dispersed
Cmo14g01249 Cmo-Chr14:10538568 Cmo17g00631 Cmo-Chr17:6599797 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01249 K01051 - csv:101207996 869.766