Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01257 ATGACGCCATTATTGTCCTGTAATTTGCCTGGAATAGCCGAAAGGGATGCTCGATTTGGGGAGTTCTTGATCATTCTGGAGCTGGGATTCGACCTGGATATCCTCGTCGCGGCAGTGCAAGTTCATCTCCAATCTGGTAAATACTCCCTTGCTCTTACTGTTGTTGGGATGGGATCAACAGAGGAGAAAACAAATTACCTATCAGATGAAGGAACTCCGTTGAAGTCCTCACCGGTCGCGAAAAACGTATCGCATAGCTTCGATTGCGAGACGGGTCCTGTTCATTCTTCCCCAGATGTTACAAGATGGTGGAAGACTAACAACATTCGTATTAGACCTCTTAGAAGTGCTTATATAGTGTTAGTTAGAGCAAAGATCAACGTGTTACTACCTTTTGGTCCTTTGGCTATTCTGCTACATTACTTGACCGGAAAGCATGGATGGGTCTTCTTTTTCACTCTACTTGGAATTGCACCCTTGGCAGAGCGTCTCGGTTATGCAACCGAGCAGCTTGCCTTCTACACTGGACCAACAGTTGGCGGTCTTTTGAATGCAACATTTGGAAATGCTACTGAAATGATTATATCGATTTATGCGTTAAAGAGTGGGATGATTAGGGTTGTTCAACAGTCATTACTGGGTTCAATCTTGTCAAATATGCTCCTTGTTCTTGGTTGTGCGTTCTTTACTGGTGGGATTGTTCATCATAAGGTGCAGGTTTTCAATAAGGGTTCTGCTGTTGTTAATTCAGGATTGTTGTTGATGGCTGTTATGGGAACAACTTTTCCGGCTGTTCTTCATTTCACCCACACAGAACTTCATTCTGGAGAGTCAGCACTATCTCTTTCAAGATTTAGCAGTTGTATTATGCTGATTGCATATGCAAGCTACCTTTTCTTTCAACTTAAAAGTCAGCAGGACCTCTATGGTCCTCTTGATGAGGTGAGTCTCTTTGGCAAGATTGGATATTTAGAGGTAGGTGAAGATGAAGTTGAGGATGATTCTGAGATTTATGCTTGGGAAGCAATTGGATGGCTTGCTATCTTGACTGTATGGGTATCTATTTTATCTGGATATCTTGTTGATGCTATCCAGGGAGCATCTGAATCATTGAATTTGCCAGTAGCTTTTATTAGTGTAATTTTGTTGCCAATTGTTGGAAATGCTGCTGAACATGCAAGTGCAATCATGTTTGCCATGAAGGATAAGCTTGACATCACCCTTGGAGTTGCTATTGGGTCGTCGACACAAATATCCATGTTTGTGATCCCGTTTTGCGTGGTTGTTGGATGGTGCATGGGGGAACCAATGGACTTGAACTTTAAACTCTTTGAGACAGCAACTTTGTTCATCACTGTTCTAGTGGTGGCCTTTATGTTGCAGTGGCAGCCAGCTTTTTTGTACACATTGACCCTACTAATGATAATGACTAACCCTCGAAGCAAGTATGTCCCTGGGAATTTACTGCAACCTGAACCTTTGCATTGCATTGGTTCTCAAACCACCATTGCTTCAGTTCGATGGAACCTGCAAACATTGGAGGACTCACACAAATGGGTTGGTCTTTAA 1569 42.7 MTPLLSCNLPGIAERDARFGEFLIILELGFDLDILVAAVQVHLQSGKYSLALTVVGMGSTEEKTNYLSDEGTPLKSSPVAKNVSHSFDCETGPVHSSPDVTRWWKTNNIRIRPLRSAYIVLVRAKINVLLPFGPLAILLHYLTGKHGWVFFFTLLGIAPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHHKVQVFNKGSAVVNSGLLLMAVMGTTFPAVLHFTHTELHSGESALSLSRFSSCIMLIAYASYLFFQLKSQQDLYGPLDEVSLFGKIGYLEVGEDEVEDDSEIYAWEAIGWLAILTVWVSILSGYLVDAIQGASESLNLPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVVGWCMGEPMDLNFKLFETATLFITVLVVAFMLQWQPAFLYTLTLLMIMTNPRSKYVPGNLLQPEPLHCIGSQTTIASVRWNLQTLEDSHKWVGL 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10577187 10582787 - CmoCh14G012570.1 Cmo14g01257 396523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01257 522 Pfam Sodium/calcium exchanger protein 148 302 IPR004837 GO:0016021|GO:0055085
Cmo14g01257 522 Pfam Sodium/calcium exchanger protein 343 473 IPR004837 GO:0016021|GO:0055085
Cmo14g01257 522 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 57 468 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cmo14g01257 522 TIGRFAM caca2: calcium/proton exchanger 120 461 - -
Cmo14g01257 522 Gene3D - 177 478 IPR044880 -
Cmo14g01257 522 TIGRFAM cax: calcium/proton exchanger 129 459 IPR004798 GO:0006816|GO:0015369
Cmo14g01257 522 PANTHER VACUOLAR CATION/PROTON EXCHANGER 57 468 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00823 Cmo-Chr9:4231030 Cmo14g01257 Cmo-Chr14:10577187 1.96E-06 dispersed
Cmo14g01257 Cmo-Chr14:10577187 Cmo20g00692 Cmo-Chr20:3416859 9.21E-165 dispersed
Cmo01g00025 Cmo-Chr1:90228 Cmo14g01257 Cmo-Chr14:10577187 8.54E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01257 K07300 - csv:101219432 724.161