Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01265 ATGAACTTTGCAGAAATACCCATAAAAAAACTAGCACCTCCCAAGAACAACGTACCCTCCACCTCTCTGTCTTTCAAGCTTTCAAGAACAATGAATTCAAGTCCAAAGACCTGCACCACCTCTCCTTTCACACCAACTCAATGGCAAGAACTAGAACACCAAGCTTTGATCTTCAAATACATGGTTTCAGGAGTACCAATCCCTCCTGATCTAATCTTCTCTGTGAAAAGAAGCTTGGATTCCTCCCTTTCTGCAAGACTTTTCCCTCACCAACCCATTGGGTGGGGGTGTTTTGAGATGGGTTTTGGCAGAAAAACAGACCCAGAACCAGGAAGGTGCAGAAGAACAGATGGCAAAAAATGGAGATGCTCAAAAGAAGCTTTTCCAGACTCCAAATACTGCGAGAAACACATGCATAGAGGCAGAAATCGTTCAAGAAAGCCTGTGGAAATCTCTTCTTCCTCTTCTTCTTCTTCTTCTTCATCTTCAATGACCTGTGAAACTCAATCATATCACCAAGCTCCTCCTCCTGCTGCTGCTGCTTATCATGAATCCTCCATTCATCCATTTATGTATACTCAATCTTCCTCCTCCAGACCTCCCTGCTCTGATTTCCCTTCAAATAATACAAACCCTCAACTCTTTTTGTACTCAGGGACTCATTCTCAAGCTGATAAAGATTACAGGGATATTAATGGTTCAAGAGAGGGCGTTGGCGTGCAGGCTTTCTTTCCCTCGGTTGCTGAGGTTTATAATAATCAGCAGCCAATAGCGATGGATTCTTACAAAGGATGCTCCCAATTTGTTACTCAAAGCCACCAAATTTACAATTCTAAACAGGCAAGGCAAGAACAAGAGCAACACTGCTTTGTTTTGGGCACAGATTTCAATAAATCGTCAAAATCAGCTAAAGCAGAGGAAGAAGAACAAGAACAAGAACAAGATGGTGAAACCCAGAAGCCGCTACTCCATTTCTTTGAGGATTGCCCACCAAAAAACTCGGATTCCTGGCTTGATTTAGCCTCAAATTCAAGTATACAAAATGGAAATTTTATTGGGTTATGA 1065 42.07 MNFAEIPIKKLAPPKNNVPSTSLSFKLSRTMNSSPKTCTTSPFTPTQWQELEHQALIFKYMVSGVPIPPDLIFSVKRSLDSSLSARLFPHQPIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAFPDSKYCEKHMHRGRNRSRKPVEISSSSSSSSSSSSMTCETQSYHQAPPPAAAAYHESSIHPFMYTQSSSSRPPCSDFPSNNTNPQLFLYSGTHSQADKDYRDINGSREGVGVQAFFPSVAEVYNNQQPIAMDSYKGCSQFVTQSHQIYNSKQARQEQEQHCFVLGTDFNKSSKSAKAEEEEQEQEQDGETQKPLLHFFEDCPPKNSDSWLDLASNSSIQNGNFIGL 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10619218 10620624 + CmoCh14G012650.1 Cmo14g01265 396531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01265 354 PANTHER - 35 168 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cmo14g01265 354 PANTHER - 154 348 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cmo14g01265 354 ProSiteProfiles WRC domain profile. 107 151 IPR014977 -
Cmo14g01265 354 PANTHER GROWTH-REGULATING FACTOR 5 35 168 - -
Cmo14g01265 354 PANTHER GROWTH-REGULATING FACTOR 5 154 348 - -
Cmo14g01265 354 MobiDBLite consensus disorder prediction 300 325 - -
Cmo14g01265 354 Pfam QLQ 42 75 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cmo14g01265 354 MobiDBLite consensus disorder prediction 134 180 - -
Cmo14g01265 354 ProSiteProfiles QLQ domain profile. 42 77 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cmo14g01265 354 SMART QLQ_2 41 77 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cmo14g01265 354 Pfam WRC 108 150 IPR014977 -
Cmo14g01265 354 MobiDBLite consensus disorder prediction 148 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01265 - - - csv:101205529 516.153
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g00038 Cmo14g01265 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00128 Cmo-Chr5:555941 Cmo14g01265 Cmo-Chr14:10619218 1.38E-44 dispersed
Cmo07g00639 Cmo-Chr7:2889815 Cmo14g01265 Cmo-Chr14:10619218 3.99E-39 dispersed
Cmo10g00789 Cmo-Chr10:3672292 Cmo14g01265 Cmo-Chr14:10619218 1.39E-63 dispersed
Cmo11g00738 Cmo-Chr11:3593611 Cmo14g01265 Cmo-Chr14:10619218 6.41E-66 dispersed
Cmo12g00548 Cmo-Chr12:3374799 Cmo14g01265 Cmo-Chr14:10619218 1.90E-42 dispersed
Cmo14g01265 Cmo-Chr14:10619218 Cmo20g00955 Cmo-Chr20:5195567 4.86E-59 dispersed
Cmo01g00038 Cmo-Chr1:125736 Cmo14g01265 Cmo-Chr14:10619218 4.26E-175 wgd
Cmo14g01265 Cmo-Chr14:10619218 Cmo05g01417 Cmo-Chr5:10884190 2.33E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g99 Blo05g00042 . Bda04g00930 . . . . . . . Cma01g00034 Cma14g01236 Car01g00027 Car14g01092 . . . Bhi01g02800 Tan04g2799 Cmetu04g2587 Lac12g2484 Hepe02g1533 . . Cla07g01338 Cam07g1156 Cec07g1527 Cco07g1484 Clacu07g1409 Cmu07g1384 Cre07g1767 . . . . . . Chy04g00698 . . . . . . . Bma09g00981 . . Cmo01g00038 Cmo14g01265 . . . . Cpe02g01745 Cpe03g01046 . . . . . . . . . . . . . . Lsi07g00619 . . Cme04g01295
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo14g01265 CST 33 141 GRF Transcription Factor Family AT3G13960 78.9 7.0e-52 202.2
Cmo05g01417 CCT,ECH 6 110 GRF Transcription Factor Family AT3G13960 73.3 7.8e-43 172.2
Cmo11g00738 CCT,CST,ECH 8 109 GRF Transcription Factor Family AT3G13960 72.5 5.6e-41 166.0
Cmo10g00789 CCT,CST,ECH 8 134 GRF Transcription Factor Family AT3G13960 58.3 5.2e-39 159.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007893 1 3 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 2 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11015 PF08879 WRC 1.10E-21 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01265 Cmo_Chr14 FPKM 3.506838 3.964547 14.242972 15.262022 45.072948 37.759041 40.956432 14.865746 14.698589 15.205812