Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo14g01286 | ATGCCGGAAGATATGGCTGGTTTGGCTCCCGAAGGATCTCAATTTGACGCCCGTCAGTATGACACCAAAATGAATGAGTTACTTTCATCGGATGGACAGGATTTCTTCACCTCATACGATGAAGTTTATGATAGCTTTGATTCTATGGGCTTGCAAGAAAACCTCCTCAGAGGCATTTATGCCTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGAATTGTTCCTTTTTGCAAAGGCCTTGATGTGATCCAACAAGCGCAGTCTGGAACAGGGAAGACTGCAACCTTTTGCTCTGGCATTTTGCAGCAACTTGATTATGGTCTCGTGCAATGCCAGGCTTTGGTCCTGGCACCCACTAGGGAGCTTGCTCAACAGATTGAGAAGGTTATGCGAGCCCTTGGTGATTATCTTGGTGTAAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTACGTGAGGACCAACGCATTCTTCAAGCTGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTGTTTGATATGTTGCGTAGACAATCACTTCGTCCAGACTACATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGTGGATTTAAGGATCAGATTTATGACATTTTCCAGCTGCTACCATCCAAGATTCAGGTTGGTGTCTTCTCTGCTACAATGCCACCTGAAGCCCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTTAGGATTCTTGTAAAGCGTGACGAGCTCACCTTGGAAGGTATCAAGCAGTTCTATGTCAATGTTGATAAGGAAGACTGGAAGCTTGAGACACTCTGTGATCTTTACGAGACTTTGGCCATCACCCAGAGTGTCATTTTTGTGAATACTCGTCGTAAAGTTGATTGGCTCACTGATAAGATGCGAAGCCGTGACCACACAGTATCTGCTACCCATGGTGACATGGACCAGAACACCCGTGACATTATTATGCGTGAGTTCCGTTCGGGTTCATCTAGAGTTCTCATAACCACTGATCTATTGGCCCGTGGTATTGACGTCCAACAGGTTTCTCTTGTTATTAACTTCGATCTGCCGACACAACCCGAGAATTACCTTCATCGTATAGGAAGAAGTGGACGTTTTGGAAGAAAGGGTGTTGCCATCAACTTCGTAACTACGGATGATGAAAGAATGCTTTTCGACATTCAGAAGTTCTATAATGTCTTAATTGAAGAACTGCCAGCAAATGTTGCTGATCTCCTGTGA | 1254 | 44.58 | MPEDMAGLAPEGSQFDARQYDTKMNELLSSDGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQKFYNVLIEELPANVADLL | 417 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 10771250 | 10775128 | - | CmoCh14G012860.1 | Cmo14g01286 | 396552 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo14g01286 | 417 | Pfam | DEAD/DEAH box helicase | 69 | 230 | IPR011545 | GO:0003676|GO:0005524 | |
Cmo14g01286 | 417 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 75 | 245 | IPR014001 | - | |
Cmo14g01286 | 417 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 256 | 417 | IPR001650 | - | |
Cmo14g01286 | 417 | SMART | helicmild6 | 297 | 378 | IPR001650 | - | |
Cmo14g01286 | 417 | Gene3D | - | 34 | 252 | IPR027417 | - | |
Cmo14g01286 | 417 | SMART | ultradead3 | 63 | 260 | IPR014001 | - | |
Cmo14g01286 | 417 | CDD | DEADc_EIF4A | 49 | 246 | - | - | |
Cmo14g01286 | 417 | Pfam | Helicase conserved C-terminal domain | 270 | 378 | IPR001650 | - | |
Cmo14g01286 | 417 | CDD | SF2_C_DEAD | 257 | 387 | - | - | |
Cmo14g01286 | 417 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 44 | 72 | IPR014014 | GO:0003724 | |
Cmo14g01286 | 417 | PANTHER | EUKARYOTIC INITIATION FACTOR 4A-2 | 27 | 417 | - | - | |
Cmo14g01286 | 417 | Gene3D | - | 253 | 417 | IPR027417 | - | |
Cmo14g01286 | 417 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 191 | 199 | IPR000629 | - | |
Cmo14g01286 | 417 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 113 | 398 | IPR027417 | - | |
Cmo14g01286 | 417 | PANTHER | RNA HELICASE | 27 | 417 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo08g00750 | Cmo14g01286 | CCT | |
Cmo01g00057 | Cmo14g01286 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo14g01286 | Cmo-Chr14:10771250 | Cmo01g00266 | Cmo-Chr1:1210950 | 3.41E-156 | dispersed | |
Cmo05g00440 | Cmo-Chr5:2056656 | Cmo14g01286 | Cmo-Chr14:10771250 | 0 | transposed | |
Cmo01g00057 | Cmo-Chr1:200325 | Cmo14g01286 | Cmo-Chr14:10771250 | 0 | wgd | |
Cmo14g01286 | Cmo-Chr14:10771250 | Cmo17g00686 | Cmo-Chr17:7014859 | 0 | wgd | |
Cmo14g01286 | Cmo-Chr14:10771250 | Cmo08g00750 | Cmo-Chr8:4741661 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo14g01286 | K03257 | - | csv:101223055 | 811.216 |