Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01286 ATGCCGGAAGATATGGCTGGTTTGGCTCCCGAAGGATCTCAATTTGACGCCCGTCAGTATGACACCAAAATGAATGAGTTACTTTCATCGGATGGACAGGATTTCTTCACCTCATACGATGAAGTTTATGATAGCTTTGATTCTATGGGCTTGCAAGAAAACCTCCTCAGAGGCATTTATGCCTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGAATTGTTCCTTTTTGCAAAGGCCTTGATGTGATCCAACAAGCGCAGTCTGGAACAGGGAAGACTGCAACCTTTTGCTCTGGCATTTTGCAGCAACTTGATTATGGTCTCGTGCAATGCCAGGCTTTGGTCCTGGCACCCACTAGGGAGCTTGCTCAACAGATTGAGAAGGTTATGCGAGCCCTTGGTGATTATCTTGGTGTAAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTACGTGAGGACCAACGCATTCTTCAAGCTGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTGTTTGATATGTTGCGTAGACAATCACTTCGTCCAGACTACATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGTGGATTTAAGGATCAGATTTATGACATTTTCCAGCTGCTACCATCCAAGATTCAGGTTGGTGTCTTCTCTGCTACAATGCCACCTGAAGCCCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTTAGGATTCTTGTAAAGCGTGACGAGCTCACCTTGGAAGGTATCAAGCAGTTCTATGTCAATGTTGATAAGGAAGACTGGAAGCTTGAGACACTCTGTGATCTTTACGAGACTTTGGCCATCACCCAGAGTGTCATTTTTGTGAATACTCGTCGTAAAGTTGATTGGCTCACTGATAAGATGCGAAGCCGTGACCACACAGTATCTGCTACCCATGGTGACATGGACCAGAACACCCGTGACATTATTATGCGTGAGTTCCGTTCGGGTTCATCTAGAGTTCTCATAACCACTGATCTATTGGCCCGTGGTATTGACGTCCAACAGGTTTCTCTTGTTATTAACTTCGATCTGCCGACACAACCCGAGAATTACCTTCATCGTATAGGAAGAAGTGGACGTTTTGGAAGAAAGGGTGTTGCCATCAACTTCGTAACTACGGATGATGAAAGAATGCTTTTCGACATTCAGAAGTTCTATAATGTCTTAATTGAAGAACTGCCAGCAAATGTTGCTGATCTCCTGTGA 1254 44.58 MPEDMAGLAPEGSQFDARQYDTKMNELLSSDGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQKFYNVLIEELPANVADLL 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10771250 10775128 - CmoCh14G012860.1 Cmo14g01286 396552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01286 417 Pfam DEAD/DEAH box helicase 69 230 IPR011545 GO:0003676|GO:0005524
Cmo14g01286 417 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 75 245 IPR014001 -
Cmo14g01286 417 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 256 417 IPR001650 -
Cmo14g01286 417 SMART helicmild6 297 378 IPR001650 -
Cmo14g01286 417 Gene3D - 34 252 IPR027417 -
Cmo14g01286 417 SMART ultradead3 63 260 IPR014001 -
Cmo14g01286 417 CDD DEADc_EIF4A 49 246 - -
Cmo14g01286 417 Pfam Helicase conserved C-terminal domain 270 378 IPR001650 -
Cmo14g01286 417 CDD SF2_C_DEAD 257 387 - -
Cmo14g01286 417 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 44 72 IPR014014 GO:0003724
Cmo14g01286 417 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 27 417 - -
Cmo14g01286 417 Gene3D - 253 417 IPR027417 -
Cmo14g01286 417 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 191 199 IPR000629 -
Cmo14g01286 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 398 IPR027417 -
Cmo14g01286 417 PANTHER RNA HELICASE 27 417 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00750 Cmo14g01286 CCT
Cmo01g00057 Cmo14g01286 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01286 Cmo-Chr14:10771250 Cmo01g00266 Cmo-Chr1:1210950 3.41E-156 dispersed
Cmo05g00440 Cmo-Chr5:2056656 Cmo14g01286 Cmo-Chr14:10771250 0 transposed
Cmo01g00057 Cmo-Chr1:200325 Cmo14g01286 Cmo-Chr14:10771250 0 wgd
Cmo14g01286 Cmo-Chr14:10771250 Cmo17g00686 Cmo-Chr17:7014859 0 wgd
Cmo14g01286 Cmo-Chr14:10771250 Cmo08g00750 Cmo-Chr8:4741661 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01286 K03257 - csv:101223055 811.216