Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01289 ATGTGGATCCCTCCACCTGTCTCCTTCGACGGTTTTGTTCTTCTTTATTGGATAAAGAGAGGGAAGAATTTGATGGAATTCCTTCTCGAAATCATTGCAAGAATGATGGAAGAGATGTCTCCTGCTGTTTCTTTGACACTTAGTTTGGGCAATTCAAAGTCTGATAGTTCAGAAAGTCCTGGTCATGTCGAATACGCACGCCTAAAGTTGGTGACCGACACGGTAGGTTCGATTGGTAATGGTAGCTTCCATGATTTTAATGGTATAGTTGATGGCTTAACCGTGTCGCGCCCAACGGACAATGGTCAAGGTATAAACACGTTTTGGGGGTTGTTACCGAAGAACGGCACGAATTTGAGTGTAGATAAGGAAGATGCATTGTTATCTACTCTGGATTACCCTGATGAAATGGTAGATGATGGATTGTTTGGTATTAGTGGTGGTGTCAAAATTGGAGATGTTAGTAATGGTCATATTGTTGCTAAGGCTATCATCTTGGTGGAATCAGGGAATATCCCTACCAATGAACTTATTGTGGCGACCGTAAGCCCGGATTTAGAAGTATCTGCCTCGTCGGAGCTGCACGCCTCCCCTACTGTAGTTTTCGAATCAAAAGGGGGGGATAGTGTTCATAAAGGCGTTCGTAGCGTCTTCGAACGTGATTGTATTCCACTTTGGGGGTCGGTATCGATTTGTGGTAGAAGACCTGAAATGGAAGATGCAATTTCTTCTGTTCCTTGTTTTGCAAAGATTCCTATCAAAATGCTTGTAGGAAATGATTTGGTGAATGGAATTGGTCAAAGTTTAACACATATCAACAGCCATTTTTTTGGTGTTTATGATGGACACGGGGGCCCTCAGGTACCTTGTTCTATTTGGCAAATGTGCTGTTCTTGTTTGAATTCTCTGCTTGAACCAAGTCTGTATCATAGTCTGTATATAACTTTTGACGTGTTTCTCGAATTCGATATCGTTGCTGATTATTGTCGGGAGCGGATACACGTGGCGTTAGCTGAAGAGATAAGAGATTTTAAACAAGATGTAAATAATGGAAGCAATGGAGAGAATTGGCAGCAGGGTTGGGAGAGAACCTTTAACAATTGCTTTCTTAGAGTTGATGATGAAATAGAAGGAAAAGTTGGTAGAATGGTCGGAGGTAGCGGTAGCGGCGGAGATGTTTTCGATACAAGCTTTGAGCCTGTTGCCCCGGAAACTGTTGGCTCGACTGCTGTTGTTGCATTGGTCTGTTCATCACACATCATTGTTGCGAACTGTGGTGATTCAAGAGCAGTCCTATGCCGTGGTAAAGAACCCGTGGCTTTATCGGTCGATCATAAACCAAATCGGGAAGACGAGTATGCTCGGATTGAATCGTCTGGAGGCAAGGTCATTCAGTGGAACGGACATCGTGTGTTCGGAGTTCTTGCAATGTCTAGATCGATTGGTACGTTATTTCTGATCCAATGCTTATGCTCTTGCTTGTGCACAGAAAGATTAGATTATCTGATTCTTCTGACTAACAGATATTTGAAGCCATGGATTATTCCTGATCCGGAAGTTATGTGCTTTGCTCGTGCGAAAGAAGACGAGTGTCTGATTTTAGCGAGCGATGGACTGTGGGATGTGATGACAAATGAGGAAGTGTGTGAAGTAGCTCGGAGGCGGATTCTGCTTTGGCACAAGAAACACGGGGCGTCAGCTTCGTGTCTCGGCAATCGGGGCACGGGAGTTGACCCAGCTGCACAAGCTGCTGCAGATTACCTCTCCATGCTTGCTCTCCAAAAGGGAAGCAAAGACAATATCTCTGTGATTGTAGTGGACTTGAAAGCTCAACGGAAGTTCAAGACCAAATCTTAA 1857 44.05 MWIPPPVSFDGFVLLYWIKRGKNLMEFLLEIIARMMEEMSPAVSLTLSLGNSKSDSSESPGHVEYARLKLVTDTVGSIGNGSFHDFNGIVDGLTVSRPTDNGQGINTFWGLLPKNGTNLSVDKEDALLSTLDYPDEMVDDGLFGISGGVKIGDVSNGHIVAKAIILVESGNIPTNELIVATVSPDLEVSASSELHASPTVVFESKGGDSVHKGVRSVFERDCIPLWGSVSICGRRPEMEDAISSVPCFAKIPIKMLVGNDLVNGIGQSLTHINSHFFGVYDGHGGPQVPCSIWQMCCSCLNSLLEPSLYHSLYITFDVFLEFDIVADYCRERIHVALAEEIRDFKQDVNNGSNGENWQQGWERTFNNCFLRVDDEIEGKVGRMVGGSGSGGDVFDTSFEPVAPETVGSTAVVALVCSSHIIVANCGDSRAVLCRGKEPVALSVDHKPNREDEYARIESSGGKVIQWNGHRVFGVLAMSRSIGTLFLIQCLCSCLCTERLDYLILLTNRYLKPWIIPDPEVMCFARAKEDECLILASDGLWDVMTNEEVCEVARRRILLWHKKHGASASCLGNRGTGVDPAAQAAADYLSMLALQKGSKDNISVIVVDLKAQRKFKTKS 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10793271 10795683 + CmoCh14G012890.1 Cmo14g01289 396555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01289 618 Pfam Protein phosphatase 2C 401 601 IPR001932 -
Cmo14g01289 618 PANTHER ALPHABET, ISOFORM E-RELATED 129 288 - -
Cmo14g01289 618 PANTHER ALPHABET, ISOFORM E-RELATED 325 486 - -
Cmo14g01289 618 SUPERFAMILY PP2C-like 216 609 IPR036457 -
Cmo14g01289 618 PANTHER ALPHABET, ISOFORM E-RELATED 507 618 - -
Cmo14g01289 618 SMART PP2C_4 215 606 IPR001932 -
Cmo14g01289 618 PANTHER PROTEIN PHOSPHATASE 2C 16 129 288 - -
Cmo14g01289 618 Gene3D - 323 618 IPR036457 -
Cmo14g01289 618 Gene3D - 212 311 IPR036457 -
Cmo14g01289 618 PANTHER PROTEIN PHOSPHATASE 2C 16 325 486 - -
Cmo14g01289 618 PANTHER PROTEIN PHOSPHATASE 2C 16 507 618 - -
Cmo14g01289 618 ProSitePatterns PPM-type phosphatase domain signature. 276 284 IPR000222 GO:0043169
Cmo14g01289 618 ProSiteProfiles PPM-type phosphatase domain profile. 225 608 IPR001932 -
Cmo14g01289 618 CDD PP2Cc 227 608 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00060 Cmo14g01289 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00437 Cmo-Chr5:2039564 Cmo14g01289 Cmo-Chr14:10793271 1.14E-156 dispersed
Cmo11g00656 Cmo-Chr11:3152471 Cmo14g01289 Cmo-Chr14:10793271 2.27E-75 dispersed
Cmo12g00591 Cmo-Chr12:3625701 Cmo14g01289 Cmo-Chr14:10793271 6.38E-157 dispersed
Cmo14g01289 Cmo-Chr14:10793271 Cmo15g00113 Cmo-Chr15:542388 1.68E-60 dispersed
Cmo01g00060 Cmo-Chr1:218493 Cmo14g01289 Cmo-Chr14:10793271 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01289 K14497 - csv:101203499 853.203