Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01296 ATGGAGGACACTATGTCCAATTTAACTTCAGCTTCTGGTGAACCCAGTGCCTGCTCCGGCAACCATTCCGATCACCTTCCGGCCAACTATTCCGGCCAGTATTTTTCAGCCCCACCACCAAAAAAGAAGAGAAACCTCCCCGGAAATCCAGACCCAGATGCCGAAGTGGTAGCTTTATCGCCGAAGACGCTGATGGCGACGAATCGATTCGTATGCGAGATCTGCAGCAAGGGGTTTCAGAGAGATCAGAATCTTCAGCTCCACAAAAGAGGGCACAATCTGCCATGGAAATTAAAGCAAAGAGCTAACAAAGAGGTTATAAGGAAGAAAGTGTATGTGTGTCCAGAAACAAACTGTGTTCATCATGATCCATTGAGGGCTCTTGGGGACTTGACAGGAATCAAGAAGCACTTTTGTAGAAAGCATGGCGAGAAGAAATGGAAATGTGATAAGTGTTCTAAGAGGTACGCTGTTCAATCGGATTGGAAAGCTCATTCCAAGACTTGTGGCACTAGAGAGTACAGATGTGATTGTGGAACCCTTTTCTGGAGGAGGGATAGTTTCATCACCCACAGAGCTTTTTGTGATGCATTAGCAGAGGAAAGTGCAAGAGCCATTACTACATCAAACCCAAATAACAATCAAAACCTTCCCATTTCTTCATCAATCTCTCACTTAAACTTCCAAAATCCCTTAGATATCAACTCATTCTCTCTCAAAAAAGAGCACCAACAAATCCCAACCACCAACAATTTCAATATTCCCCCATGGATAGGCTGTCCAAGCTCAAGATCATCACCATTACAAGATCATCAAAGCCTCATCATGATCAACAATGATCAAATTATGAACCCTAATAATCCTCTTCATCTAATTCAAAGCTCTTCCCCTTCTCCACATATGTCAGCCACAGCACTTCTTCAAAAAGCAGCTCAAATGGGAGCTACAATGAGCAATAGTAACAACAATGGTAACATCTCCTCCTCCTCCTCCTCCTCACGTGACAATCATCATCAGATCTTGATGGCTGGCAGTGAAGGTGTAGGGGTTTCTCATGCTCTGCCACTCCACACGAACAAATCCAATAATTACAATGATTTTGAAGGGGCTTGTTTTGAATTAGAGAGATTTGGAGGGGGTTTTGAGAAAGATGAGATTTTTAGAGGCAGAAGTGATGAAGGGCTGAGTACAAGAGATTTCTTGGGGCTTAGAGCTATTTCTCACACTGAGTTTTTGAATAATATTGCGGCTGTTGGTTATAGTAACTGCATCAATGGCGGCGCTCCTCAAACTCCTCGAACTCAATTTCATAACCAACCTGGCTGGCAAGGTTAG 1335 43.52 MEDTMSNLTSASGEPSACSGNHSDHLPANYSGQYFSAPPPKKKRNLPGNPDPDAEVVALSPKTLMATNRFVCEICSKGFQRDQNLQLHKRGHNLPWKLKQRANKEVIRKKVYVCPETNCVHHDPLRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFWRRDSFITHRAFCDALAEESARAITTSNPNNNQNLPISSSISHLNFQNPLDINSFSLKKEHQQIPTTNNFNIPPWIGCPSSRSSPLQDHQSLIMINNDQIMNPNNPLHLIQSSSPSPHMSATALLQKAAQMGATMSNSNNNGNISSSSSSSRDNHHQILMAGSEGVGVSHALPLHTNKSNNYNDFEGACFELERFGGGFEKDEIFRGRSDEGLSTRDFLGLRAISHTEFLNNIAAVGYSNCINGGAPQTPRTQFHNQPGWQG 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10837630 10839925 + CmoCh14G012960.1 Cmo14g01296 396562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01296 444 MobiDBLite consensus disorder prediction 316 336 - -
Cmo14g01296 444 MobiDBLite consensus disorder prediction 1 30 - -
Cmo14g01296 444 Gene3D Classic Zinc Finger 127 205 - -
Cmo14g01296 444 SUPERFAMILY beta-beta-alpha zinc fingers 69 167 IPR036236 -
Cmo14g01296 444 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Cmo14g01296 444 SMART c2h2final6 147 167 IPR013087 -
Cmo14g01296 444 SMART c2h2final6 70 92 IPR013087 -
Cmo14g01296 444 SMART c2h2final6 112 142 IPR013087 -
Cmo14g01296 444 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 340 - -
Cmo14g01296 444 MobiDBLite consensus disorder prediction 1 54 - -
Cmo14g01296 444 Gene3D Classic Zinc Finger 49 119 - -
Cmo14g01296 444 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Cmo14g01296 444 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 7 340 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00365 Cmo-Chr6:1771849 Cmo14g01296 Cmo-Chr14:10837630 3.69E-106 dispersed
Cmo14g00196 Cmo-Chr14:889620 Cmo14g01296 Cmo-Chr14:10837630 5.41E-114 dispersed
Cmo14g01296 Cmo-Chr14:10837630 Cmo20g00655 Cmo-Chr20:3205336 3.16E-106 dispersed
Cmo01g00064 Cmo-Chr1:257387 Cmo14g01296 Cmo-Chr14:10837630 0 wgd
Cmo14g01296 Cmo-Chr14:10837630 Cmo17g00694 Cmo-Chr17:7056431 1.12E-118 wgd
Cmo14g01296 Cmo-Chr14:10837630 Cmo08g00742 Cmo-Chr8:4706485 1.15E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11019 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01296 K25870 - csv:101204728 581.252