Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01321 ATGTCGTGGCAATCTTACATTGATGATCAGTTGATGTATGAGGTCGATGGCCAACATCTCAAAGCCGCTGCTATAGTTGGTAACGACGGTTCTGTTTGGGCTAAGAGCTCCGAATTCCCCCAGTACAAGCCAGAAGAGATTTCTGCCATTATGAAGGATTTTGATGAGCCTGGATCTCTTGCCCCGACTGGGTTGCACCTTGCTGGATCGAAGTACATGGTTATCCAGGGGGAATCTGGAGCTGTTATCCGTGGAAAGAAGGGCACTTCTGGAATCACCGTAAAGAAAACAAACCAAGCACTGATATTTGGTTTATATGACGAACCCATGACTCCAGGACAGTGCAACATGATTGTTGAGAAGTTGGGAGATTACCTGATTGATCAAGGCATGTAA 396 45.96 MSWQSYIDDQLMYEVDGQHLKAAAIVGNDGSVWAKSSEFPQYKPEEISAIMKDFDEPGSLAPTGLHLAGSKYMVIQGESGAVIRGKKGTSGITVKKTNQALIFGLYDEPMTPGQCNMIVEKLGDYLIDQGM 131
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
14 11035489 11037438 + CmoCh14G013210.1 Cmo14g01321 396587

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01321 131 CDD PROF 2 131 IPR005455 GO:0003779
Cmo14g01321 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Cmo14g01321 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Cmo14g01321 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Cmo14g01321 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Cmo14g01321 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Cmo14g01321 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Cmo14g01321 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Cmo14g01321 131 SMART prof_2 1 131 IPR005455 GO:0003779
Cmo14g01321 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cmo14g01321 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Cmo14g01321 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Cmo14g01321 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Cmo14g01321 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Cmo14g01321 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Cmo14g01321 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Cmo14g01321 131 PANTHER PROFILIN 1 131 - -
Cmo14g01321 131 Pfam Profilin 1 131 IPR005455 GO:0003779
Cmo14g01321 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Cmo14g01321 131 SUPERFAMILY Profilin (actin-binding protein) 2 131 IPR036140 -
Cmo14g01321 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01321 K05759 PFN; profilin - csv:101218089 258.07
       

WGDs- Genes


Select Gene_1 Gene_2 Event_name
Cmo08g00707 Cmo14g01321 CCT
Cmo14g01321 Cmo17g00727 CCT
Cmo14g01321 Cmo17g00727 ECH
Cmo08g00707 Cmo14g01321 ECH
Cmo01g00092 Cmo14g01321 CST
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00092 Cmo-Chr1:420219 Cmo14g01321 Cmo-Chr14:11035489 1.40E-88 wgd
Cmo12g01309 Cmo-Chr12:11468872 Cmo14g01321 Cmo-Chr14:11035489 7.07E-68 wgd
Cmo14g01321 Cmo-Chr14:11035489 Cmo17g00727 Cmo-Chr17:7272105 1.27E-74 wgd
Cmo14g01321 Cmo-Chr14:11035489 Cmo05g01377 Cmo-Chr5:10670019 2.77E-73 wgd
Cmo14g01321 Cmo-Chr14:11035489 Cmo08g00707 Cmo-Chr8:4469155 3.59E-77 wgd
       

Deco-Alignment


Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g263 . . . . . . . . Cmo08g00707 Cmo17g00727 Cma01g00091 . Car01g00075 Car14g01139 Sed06g2183 Cpe12g00643 Cpe17g00524 Bhi01g03373 Tan04g2694 Cmetu04g1863 Lac11g0782 Hepe02g1450 . . Cla07g01272 Cam07g1227 Cec07g1455 Cco07g1416 Clacu07g1338 Cmu07g1316 Cre07g1699 . Cone17ag0127 . . Lsi02g02980 . Chy04g00956 . . . . . . . . . . Cmo01g00092 Cmo14g01321 Cma08g00743 Cma17g00758 Car08g00630 Car17g00703 Cpe02g01699 Cpe03g01090 Bhi09g00471 . . . . . . Cla09g00022 Cam09g0024 . Cco09g0025 . . . Lsi07g00531 Csa03g02348 . Cme04g01148
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo02g00807 CST 35 411 Cytoskeleton Gene Families AT2G37620 96.3 8.0e-215 743.4
Cmo07g01037 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 8.9e-214 740.0
Cmo14g00419 CST 1 377 Cytoskeleton Gene Families AT2G37620 96.3 1.5e-213 739.2
Cmo07g00807 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.4e-213 738.0
Cmo02g00620 CCT,CST 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.4e-213 738.0
Cmo06g00095 CST 1 377 Cytoskeleton Gene Families AT2G37620 96.0 4.4e-213 737.6
Cmo15g00397 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.9e-212 734.9
Cmo20g00447 CST 1 377 Cytoskeleton Gene Families AT2G37620 95.2 2.9e-212 734.9
Cmo19g00310 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 2.9e-212 734.9
Cmo04g01263 CCT,CST 1 377 Cytoskeleton Gene Families AT2G37620 95.5 4.9e-212 734.2
Cmo04g00222 CCT,CST 1 377 Cytoskeleton Gene Families AT2G37620 95.5 4.9e-212 734.2
Cmo11g01508 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 4.9e-212 734.2
Cmo20g01080 CCT,CST 1 396 Cytoskeleton Gene Families AT2G37620 90.9 1.0e-209 726.5
Cmo03g01068 . 34 393 Cytoskeleton Gene Families AT2G37620 95.3 8.6e-201 696.8
Cmo04g02766 . 270 626 Cytoskeleton Gene Families AT2G37620 95.8 2.5e-200 695.3
Cmo03g00438 . 1 357 Cytoskeleton Gene Families AT2G37620 95.5 4.7e-199 691.0
Cmo15g00397 CCT 1 377 Cytoskeleton Gene Families AT5G59370 96.8 8.9e-214 740.0
Cmo04g01263 CCT,CST 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.5e-213 739.2
Cmo06g00095 CST 1 377 Cytoskeleton Gene Families AT5G59370 96.6 4.4e-213 737.6
Cmo14g00419 CST 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.7e-212 735.7
Cmo04g00222 CCT,CST 1 377 Cytoskeleton Gene Families AT5G59370 95.8 2.2e-212 735.3
Cmo02g00807 CST 35 411 Cytoskeleton Gene Families AT5G59370 95.8 3.7e-212 734.6
Cmo20g00447 CST 1 377 Cytoskeleton Gene Families AT5G59370 95.8 8.3e-212 733.4
Cmo07g01037 . 1 377 Cytoskeleton Gene Families AT5G59370 95.8 4.1e-211 731.1
Cmo19g00310 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 1.2e-210 729.6
Cmo11g01508 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 1.2e-210 729.6
Cmo07g00807 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.6e-210 727.6
Cmo02g00620 CCT,CST 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.6e-210 727.6
Cmo20g01080 CCT,CST 1 396 Cytoskeleton Gene Families AT5G59370 89.9 1.4e-206 716.1
Cmo04g02766 . 270 626 Cytoskeleton Gene Families AT5G59370 96.9 7.8e-202 700.3
Cmo03g01068 . 34 393 Cytoskeleton Gene Families AT5G59370 94.2 1.2e-197 686.4
Cmo03g00438 . 1 357 Cytoskeleton Gene Families AT5G59370 95.2 1.2e-197 686.4
Cmo15g00397 CCT 1 377 Cytoskeleton Gene Families AT3G46520 97.1 4.0e-214 741.1
Cmo04g01263 CCT,CST 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.8e-214 740.3
Cmo06g00095 CST 1 377 Cytoskeleton Gene Families AT3G46520 96.8 2.0e-213 738.8
Cmo14g00419 CST 1 377 Cytoskeleton Gene Families AT3G46520 96.6 7.5e-213 736.9
Cmo04g00222 CCT,CST 1 377 Cytoskeleton Gene Families AT3G46520 96.0 9.8e-213 736.5
Cmo02g00807 CST 35 411 Cytoskeleton Gene Families AT3G46520 96.0 1.7e-212 735.7
Cmo20g00447 CST 1 377 Cytoskeleton Gene Families AT3G46520 96.0 3.7e-212 734.6
Cmo07g01037 . 1 377 Cytoskeleton Gene Families AT3G46520 96.0 1.9e-211 732.3
Cmo19g00310 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 5.4e-211 730.7
Cmo11g01508 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 5.4e-211 730.7
Cmo07g00807 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.0e-210 728.8
Cmo02g00620 CCT,CST 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.0e-210 728.8
Cmo20g01080 CCT,CST 1 396 Cytoskeleton Gene Families AT3G46520 90.2 6.2e-207 717.2
Cmo04g02766 . 270 626 Cytoskeleton Gene Families AT3G46520 97.2 3.5e-202 701.4
Cmo03g01068 . 34 393 Cytoskeleton Gene Families AT3G46520 94.4 5.2e-198 687.6
Cmo03g00438 . 1 357 Cytoskeleton Gene Families AT3G46520 95.0 3.4e-197 684.9
Cmo02g00807 CST 35 411 Cytoskeleton Gene Families AT3G12110 96.8 4.7e-215 744.2
Cmo06g00095 CST 1 377 Cytoskeleton Gene Families AT3G12110 96.8 3.1e-214 741.5
Cmo04g00222 CCT,CST 1 377 Cytoskeleton Gene Families AT3G12110 96.8 4.0e-214 741.1
Cmo07g01037 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 6.8e-214 740.3
Cmo20g00447 CST 1 377 Cytoskeleton Gene Families AT3G12110 96.3 8.9e-214 740.0
Cmo14g00419 CST 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.2e-213 739.6
Cmo04g01263 CCT,CST 1 377 Cytoskeleton Gene Families AT3G12110 96.3 2.0e-213 738.8
Cmo15g00397 CCT 1 377 Cytoskeleton Gene Families AT3G12110 96.0 4.4e-213 737.6
Cmo07g00807 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Cmo02g00620 CCT,CST 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Cmo19g00310 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 3.7e-212 734.6
Cmo11g01508 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 8.3e-212 733.4
Cmo20g01080 CCT,CST 1 396 Cytoskeleton Gene Families AT3G12110 90.9 3.9e-209 724.5
Cmo04g02766 . 270 626 Cytoskeleton Gene Families AT3G12110 96.1 3.9e-201 698.0
Cmo03g01068 . 34 393 Cytoskeleton Gene Families AT3G12110 95.3 3.3e-200 694.9
Cmo03g00438 . 1 357 Cytoskeleton Gene Families AT3G12110 95.2 6.2e-199 690.6
Cmo07g00807 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.6e-209 723.8
Cmo02g00620 CCT,CST 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.6e-209 723.8
Cmo04g01263 CCT,CST 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.5e-208 722.6
Cmo15g00397 CCT 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.5e-208 722.6
Cmo02g00807 CST 35 411 Cytoskeleton Gene Families AT3G18780 91.8 5.6e-208 720.7
Cmo06g00095 CST 1 377 Cytoskeleton Gene Families AT3G18780 91.8 7.3e-208 720.3
Cmo14g00419 CST 1 377 Cytoskeleton Gene Families AT3G18780 91.8 7.3e-208 720.3
Cmo19g00310 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.6e-207 719.2
Cmo11g01508 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.6e-207 719.2
Cmo04g00222 CCT,CST 1 377 Cytoskeleton Gene Families AT3G18780 91.5 2.1e-207 718.8
Cmo07g01037 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 1.1e-206 716.5
Cmo20g00447 CST 1 377 Cytoskeleton Gene Families AT3G18780 91.2 3.1e-206 714.9
Cmo20g01080 CCT,CST 1 396 Cytoskeleton Gene Families AT3G18780 88.6 2.0e-205 712.2
Cmo04g02766 . 270 626 Cytoskeleton Gene Families AT3G18780 92.7 3.4e-197 684.9
Cmo03g01068 . 34 398 Cytoskeleton Gene Families AT3G18780 91.8 1.3e-196 682.9
Cmo03g00438 . 1 357 Cytoskeleton Gene Families AT3G18780 91.3 1.7e-193 672.5
Cmo07g00807 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Cmo02g00620 CCT,CST 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.3e-209 725.3
Cmo04g01263 CCT,CST 1 377 Cytoskeleton Gene Families AT1G49240 92.6 5.0e-209 724.2
Cmo15g00397 CCT 1 377 Cytoskeleton Gene Families AT1G49240 92.6 5.0e-209 724.2
Cmo06g00095 CST 1 377 Cytoskeleton Gene Families AT1G49240 92.0 2.5e-208 721.8
Cmo14g00419 CST 1 377 Cytoskeleton Gene Families AT1G49240 92.0 2.5e-208 721.8
Cmo19g00310 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 5.6e-208 720.7
Cmo11g01508 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 5.6e-208 720.7
Cmo04g00222 CCT,CST 1 377 Cytoskeleton Gene Families AT1G49240 91.8 7.3e-208 720.3
Cmo02g00807 CST 35 411 Cytoskeleton Gene Families AT1G49240 91.5 1.2e-207 719.5
Cmo07g01037 . 1 377 Cytoskeleton Gene Families AT1G49240 91.5 2.3e-206 715.3
Cmo20g01080 CCT,CST 1 396 Cytoskeleton Gene Families AT1G49240 88.9 6.8e-206 713.8
Cmo20g00447 CST 1 377 Cytoskeleton Gene Families AT1G49240 91.0 6.8e-206 713.8
Cmo04g02766 . 270 626 Cytoskeleton Gene Families AT1G49240 92.7 3.4e-197 684.9
Cmo03g01068 . 34 398 Cytoskeleton Gene Families AT1G49240 92.1 4.4e-197 684.5
Cmo03g00438 . 1 357 Cytoskeleton Gene Families AT1G49240 91.0 3.9e-193 671.4
Cmo07g00807 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.1e-216 749.6
Cmo02g00620 CCT,CST 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.1e-216 749.6
Cmo11g01508 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 6.1e-215 743.8
Cmo19g00310 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 4.0e-214 741.1
Cmo20g01080 CCT,CST 1 396 Cytoskeleton Gene Families AT5G09810 93.7 3.4e-213 738.0
Cmo02g00807 CST 35 411 Cytoskeleton Gene Families AT5G09810 95.2 1.3e-212 736.1
Cmo20g00447 CST 1 377 Cytoskeleton Gene Families AT5G09810 95.5 2.9e-212 734.9
Cmo06g00095 CST 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.7e-212 734.6
Cmo14g00419 CST 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.7e-212 734.6
Cmo15g00397 CCT 1 377 Cytoskeleton Gene Families AT5G09810 95.5 8.3e-212 733.4
Cmo07g01037 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 1.1e-211 733.0
Cmo04g01263 CCT,CST 1 377 Cytoskeleton Gene Families AT5G09810 95.2 1.4e-211 732.6
Cmo04g00222 CCT,CST 1 377 Cytoskeleton Gene Families AT5G09810 95.0 4.1e-211 731.1
Cmo03g01068 . 34 393 Cytoskeleton Gene Families AT5G09810 97.8 1.1e-203 706.4
Cmo04g02766 . 270 626 Cytoskeleton Gene Families AT5G09810 95.5 7.3e-200 693.7
Cmo03g00438 . 1 357 Cytoskeleton Gene Families AT5G09810 95.0 3.1e-198 688.3
Cmo05g01377 CST 1 131 Cytoskeleton Gene Families AT2G19760 75.6 2.7e-56 215.3
Cmo05g01378 . 1 133 Cytoskeleton Gene Families AT2G19760 75.9 3.5e-56 214.9
Cmo12g01309 CST 1 133 Cytoskeleton Gene Families AT2G19760 76.7 3.5e-56 214.9
Cmo08g00707 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT2G19760 73.3 2.2e-55 212.2
Cmo17g00727 CCT,CST,ECH 1 138 Cytoskeleton Gene Families AT2G19760 72.5 2.9e-55 211.8
Cmo14g01321 CCT,CST,ECH 1 129 Cytoskeleton Gene Families AT2G19760 72.9 1.6e-53 206.1
Cmo01g00092 CCT,CST,ECH 1 129 Cytoskeleton Gene Families AT2G19760 72.9 4.7e-53 204.5
Cmo05g01377 CST 1 131 Cytoskeleton Gene Families AT4G29350 75.6 7.7e-56 213.8
Cmo08g00707 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29350 74.0 1.7e-55 212.6
Cmo12g01309 CST 188 318 Cytoskeleton Gene Families AT4G29350 75.6 2.9e-55 211.8
Cmo17g00727 CCT,CST,ECH 1 138 Cytoskeleton Gene Families AT4G29350 72.5 8.5e-55 210.3
Cmo05g01378 . 1 133 Cytoskeleton Gene Families AT4G29350 74.4 1.5e-54 209.5
Cmo14g01321 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29350 71.0 3.0e-52 201.8
Cmo01g00092 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29350 69.5 2.0e-51 199.1
Cmo12g01309 CST 1 133 Cytoskeleton Gene Families AT4G29340 85.1 6.0e-64 240.7
Cmo05g01378 . 1 133 Cytoskeleton Gene Families AT4G29340 83.6 3.9e-63 238.0
Cmo08g00707 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29340 76.1 1.3e-58 223.0
Cmo17g00727 CCT,CST,ECH 1 138 Cytoskeleton Gene Families AT4G29340 73.0 5.5e-57 217.6
Cmo05g01377 CST 1 131 Cytoskeleton Gene Families AT4G29340 71.6 1.3e-55 213.0
Cmo01g00092 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29340 70.1 4.8e-53 204.5
Cmo14g01321 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29340 69.4 2.4e-52 202.2
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112
       

Transcriptome


Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01321 Cmo_Chr14 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0