Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01339 ATGCGCGCCGACATGTCGGACAATAATAATCGCCTCGCTTTCACCAAAGACTTCTTCTCCTCTCCGGCTCTTTCTCTTACTCTTGCGGGGATTTTTCGCCGGGGTGAGACGGGGGAGAAAGGGGATGTTGAGATGGAGGAGGTGGATGATGGGAGAGATGATATGACGACGGCGGTGGAGGTTAGTAGTGAGAATTCGGGACCGGTGAGGTCGAGATCGGATGAGGATTACGACGGTGGAGGAGTGCATGAAGAGAATGATGATGGGTGTCATGGAAAGAGAAGGAAGAAGTATCATCGGCATACCAACGAGCAGATCAGAGAAATGGAGGCGCTGTTTAAAGAGTCGCCACATCTGGATGAGAAGCAAAGGCAGCAGCTTAGCAAACGATTAGGGCTTTCGTCGAGGCAGGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAAGCAATTCAAGAGCGTCATGAGAACACATTATTAAAAGCTGAAATGGAGAAACTTCGAGATGAAAATAAAGGAATGAGAGAAATTTCCAAGCGAAAACTCGGTTGTCCAAACTGTGGCACTACCGATGCCGGTGAAGACGACGTCGCATCGACAACCACAGAGCAACTGCGTATTAAGAATGCCAAGCTCAAAGTCGAGATTGAGAAACTACGAGCGGCACTGGGAAAACACCGACATGCAGCGGCGTCTCCGTCGTACTCATCGGAGAACGAGCAAGAGACGAACCAAAGCTGCTTAGATTATTACACAGGAATTTTCGGGCTTGAAAAGTCAAGGATCATGGAGAAGGTTCATCAAGCTCTTGAAGAGCTCAAAACAATGGCTGCCGCCGGTGACCCTCTTTGGGTCCGCAGCGTCGAGACCGGAAGAGAGATATTAAACTACGACGAGTACTTAAAAACCTTCCATCTCAACAATAATTCTAACCATCGTTGGCTCAAAACCCACATCGAGGCCTCTCGTGAGACGGCCCTTGTCTTCATGGAGCCCTCGAGGTTGGTTCAAAGCTTCATGGATGAGAATCAATGGAAGGAGATGTTTCCTTTCATGATCTCGAAGGCAGCTACGGTTGATGTTATTTGTAATGGAGGGGTTGCCAATTGGGACGGCGCAGTGCAATTGATGTTTGCAGAGGTACAAATGCTTACACCATTAGTGTCCACAAGAGAGATGTATTTCATCCGGTACTGCAAGCAGCTCGACGCTGAACGATGGGCGATTCTCGACGTTTCAATCGAAAATGTTGAAGATAATAATATCGATGTATCGTTGGTGAAGTATAGAAAACGTCCGTCTGGCTGCATCATTAAGGATGAATTTAATGGTCATTGTAAGGTAACAATGGTGGAGCATTTGGAATGTCAAAAGAACAAAGTTCATAACTTGTTCAGAAGCTTAGTCAACAATGGCGGTGGCTTTGGGGCAAAACGTTGGATGGCAACCCTCCAACTCCAATGCGAACGCCTTGCTTTCTTCATGGCAACCAACATCCCCATGAAAGACTCAAATGGAGTTGCAACACTAGCGGGAAGAAAAAGCACATTAAAGTTGGCACAGAGAATGAGTTCAAGCTTCTCCCAAGCAATAGCAGCTTCAAGTTATCAGACATGGACCAAGGTTGTGGGCAAAACAGGGGAAGACATTAGGGTTTGTTCCAGGAAGAATCTTAGTGACCTTGGTGAACCCATTGGAGCTATTTTGTGTGCAGTTTCTTCTCTATGGCTGCCTGTTTCTCCTGACCTTCTCTTTCATTTCCTGCTAGACCAAGCTCGCGCCATCCGATAA 1794 46.93 MRADMSDNNNRLAFTKDFFSSPALSLTLAGIFRRGETGEKGDVEMEEVDDGRDDMTTAVEVSSENSGPVRSRSDEDYDGGGVHEENDDGCHGKRRKKYHRHTNEQIREMEALFKESPHLDEKQRQQLSKRLGLSSRQVKFWFQNRRTQIKAIQERHENTLLKAEMEKLRDENKGMREISKRKLGCPNCGTTDAGEDDVASTTTEQLRIKNAKLKVEIEKLRAALGKHRHAAASPSYSSENEQETNQSCLDYYTGIFGLEKSRIMEKVHQALEELKTMAAAGDPLWVRSVETGREILNYDEYLKTFHLNNNSNHRWLKTHIEASRETALVFMEPSRLVQSFMDENQWKEMFPFMISKAATVDVICNGGVANWDGAVQLMFAEVQMLTPLVSTREMYFIRYCKQLDAERWAILDVSIENVEDNNIDVSLVKYRKRPSGCIIKDEFNGHCKVTMVEHLECQKNKVHNLFRSLVNNGGGFGAKRWMATLQLQCERLAFFMATNIPMKDSNGVATLAGRKSTLKLAQRMSSSFSQAIAASSYQTWTKVVGKTGEDIRVCSRKNLSDLGEPIGAILCAVSSLWLPVSPDLLFHFLLDQARAIR 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11154592 11158796 + CmoCh14G013390.1 Cmo14g01339 396605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01339 597 MobiDBLite consensus disorder prediction 59 99 - -
Cmo14g01339 597 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Cmo14g01339 597 SUPERFAMILY Bet v1-like 258 492 - -
Cmo14g01339 597 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677
Cmo14g01339 597 Pfam Homeodomain 95 150 IPR001356 GO:0003677
Cmo14g01339 597 CDD homeodomain 95 150 IPR001356 GO:0003677
Cmo14g01339 597 Gene3D - 82 165 - -
Cmo14g01339 597 SUPERFAMILY Homeodomain-like 83 153 IPR009057 -
Cmo14g01339 597 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 17 594 - -
Cmo14g01339 597 ProSiteProfiles START domain profile. 256 494 IPR002913 GO:0008289
Cmo14g01339 597 Coils Coil 151 178 - -
Cmo14g01339 597 SMART START_1 265 491 IPR002913 GO:0008289
Cmo14g01339 597 MobiDBLite consensus disorder prediction 69 92 - -
Cmo14g01339 597 Gene3D - 269 484 IPR023393 -
Cmo14g01339 597 SMART HOX_1 94 156 IPR001356 GO:0003677
Cmo14g01339 597 Coils Coil 203 230 - -
Cmo14g01339 597 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 17 594 IPR042160 -
Cmo14g01339 597 CDD START_ArGLABRA2_like 260 490 - -
Cmo14g01339 597 Coils Coil 590 597 - -
Cmo14g01339 597 Pfam START domain 269 491 IPR002913 GO:0008289
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01339 Cmo-Chr14:11154592 Cmo08g00893 Cmo-Chr8:5801325 1.88E-147 dispersed
Cmo01g00112 Cmo-Chr1:496938 Cmo14g01339 Cmo-Chr14:11154592 0 wgd
Cmo14g01339 Cmo-Chr14:11154592 Cmo08g00673 Cmo-Chr8:4319205 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11024 PF01852 START 7.30E-51 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01339 K09338 - csv:101221341 955.666