Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01447 ATGTGGGATCTCACAGTAACCTTGTGTAGGAACGTGGGTGTCATGTTGGACCTTGATGAAGAGTTGGCCCATTTCATATCGTCATGGATGAACTTTATTACCCGACTTCAAGGTGCCAACTGCCCTCGCCCTGCCCCTCTCCACCGCTCTCTCTCTCTTCTCTCTCTCCTCCCTCTCCGATCTCGATCTTCTCTTCTGGTGGAGAAGAAGATGCAGATGATGGTCTCCAAGGCTTCCTCAGCCATGGCCTCCATGCCTTGCACTAGGGTTGGAAGCGTATGTGTCTGGCCGAGCATGAAACAGCTTTCTTTTAGAAAAGACCTTTTGTATGGGGTTATGAGACTCTTATCTATACCATTGAAAACATTGCGTGGAGCTAGTCGTTCACTTAAAGTTGCTCAGTTCTGCAGTGTCGTCAATATGTCTTCCACATTGCAAATTGAACTGGTACCTTGTCTTCGTGACAACTATGCATACCTCTTACATGATGTTGATACGGGCACAGTTGGGGTTGTTGATCCTTCTGAAGCTGTACCAGTTATAGATGCTTTAAGAAAGAAAAACAGAAATTTGACATATATACTTAATACACATCATCATCATGATCACACTGGTGGGAATGAAGAATTAAAAGCAAGGTACGGAGCAAAGGTGATTGGCTCTGGAATAGATAGCGACAGAATTCCTGGAATTGACATAGCTTTAAAGGATGGAGACAAGTGGATGTTTGCTGGGCATGAAGTGCAAGTAATGGAAACTCCTGGTCATACTCGAGGTCATATTAGCTTCTACTTTCCTGGATCCGCTGCAATATTTACTGGAGATACTTTATTCAGCTTATCTTGTGGCAAGCTTTTTGAAGGAACTCCTGAACAGATGCTATCTTCCCTTAAAAAGATCACTTCTTTGCCAGATGATACCAACATATTTTGCGGTCATGAATATACTCTGAGTAACTCTAAGTTCGCTATGTCCATTGAACCTAAGAACGAGGCTCTCAAATCTTATGCAACCCAGGTTGCCAATCTACGAAGCAAGGGCTTGCCAACGATTCCAGCAACATTAAAGATGGAGAAAATGTGCAATCCATTCCTCCGTACATCAAGTATCGAAATTCGACAGTCGTTAAACGTTCAAAATACAGCGGATGATGCAGAGGTGTTGGGTATGATTCGCAGAGCCAAGGATAATTTTTAG 1197 43.36 MWDLTVTLCRNVGVMLDLDEELAHFISSWMNFITRLQGANCPRPAPLHRSLSLLSLLPLRSRSSLLVEKKMQMMVSKASSAMASMPCTRVGSVCVWPSMKQLSFRKDLLYGVMRLLSIPLKTLRGASRSLKVAQFCSVVNMSSTLQIELVPCLRDNYAYLLHDVDTGTVGVVDPSEAVPVIDALRKKNRNLTYILNTHHHHDHTGGNEELKARYGAKVIGSGIDSDRIPGIDIALKDGDKWMFAGHEVQVMETPGHTRGHISFYFPGSAAIFTGDTLFSLSCGKLFEGTPEQMLSSLKKITSLPDDTNIFCGHEYTLSNSKFAMSIEPKNEALKSYATQVANLRSKGLPTIPATLKMEKMCNPFLRTSSIEIRQSLNVQNTADDAEVLGMIRRAKDNF 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11764510 11773213 + CmoCh14G014470.1 Cmo14g01447 396713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01447 398 PANTHER BETA LACTAMASE DOMAIN 74 398 - -
Cmo14g01447 398 TIGRFAM GSH_gloB: hydroxyacylglutathione hydrolase 148 398 IPR017782 GO:0004416|GO:0019243
Cmo14g01447 398 CDD hydroxyacylglutathione_hydrolase_MBL-fold 150 313 IPR035680 -
Cmo14g01447 398 Hamap Hydroxyacylglutathione hydrolase [gloB]. 145 398 IPR017782 GO:0004416|GO:0019243
Cmo14g01447 398 Pfam Metallo-beta-lactamase superfamily 157 313 IPR001279 -
Cmo14g01447 398 PANTHER HYDROXYACYLGLUTATHIONE HYDROLASE 74 398 - -
Cmo14g01447 398 Pfam Hydroxyacylglutathione hydrolase C-terminus 314 398 IPR032282 -
Cmo14g01447 398 SMART Lactamase_B_5a 155 313 IPR001279 -
Cmo14g01447 398 Gene3D - 145 398 IPR036866 -
Cmo14g01447 398 SUPERFAMILY Metallo-hydrolase/oxidoreductase 145 398 IPR036866 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01447 K01069 gloB, gloC, HAGH; hydroxyacylglutathione hydrolase [EC:3.1.2.6] - csv:101223148 593.193
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00682 Cmo-Chr9:3380365 Cmo14g01447 Cmo-Chr14:11764510 5.09E-10 dispersed
Cmo14g01447 Cmo-Chr14:11764510 Cmo06g01700 Cmo-Chr6:11715890 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1275 . . . . . Bpe14g01061 . . . . Cma06g01708 Cma14g01412 . Car14g01242 Sed02g0960 . . Bhi01g03727 Tan10g1384 Cmetu07g1769 . . . Lcy11g1001 . . . . . . . . . . . . . . Cme07g01973 Blo02g00447 Blo07g00115 Bda11g00477 Bda13g00253 . . Bma02g00969 Bma06g01440 . . Cmo14g01447 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006291 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01447 Cmo_Chr14 FPKM 10.506849 10.868834 4.104378 5.914215 17.313011 17.590702 16.942858 8.559432 8.530528 8.695511