Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01462 ATGAAATCTACGCTAATGGGTCGTCTTCAACTCCATTTCCCTCAATTGGGTTTCCGCCAAAACCTCACAAATCCAACCCTCCATTGTTGTACGGCAGGTCCACCTCCAGATACCATCTGTGGCCTCAGAAAGGGTCAGAGGAAGCCCTTAGGTAAGTCAAGGGTGCCCTCCACTGAGTCTATTCAAGCAGTTCAGTCGCTCAAGCTCGCTAAATCCGCCTCCAAAATGGAGGACGTAATCAATAGCAAGCTTAGCAGATTGTTGAAAGCAGACTTGTTTGATGCTCTGGCTGAATTACAGAGGCAAAATGAACTGGAACTATCGCTTCAGGTCTTCAAATTTATGAGGAATGAAGAGTGGTACGAGCCAGATTTAAACTTGTACCATGTGATGATTCAAATGATGGGGAAGAACAAAATGATTGAAATGGCTGAAGAGGTCTTCCATGAGTTAAAAAGGGATGGGTTAGAACCAGACACAAGAGCTTTTAATGAGATGATGGGAGCATATTTGCAAGTAGACATGGTGGAAAGAGCTGTTGAGACATATGAATTAATGAAAGCATCAGGTTGTATTCCAGATAAACTGACTTTCAAGATTTTGATCAAGAATCTTGAGAGATTTAGGGAAGAGTTTGCTGCAGTGGTCAAGAAAGAATGTGCTGAGTTCTTGGATTCTCCTGAGAAGTTCCTCAGAGGGATGTTGAACAGAAACTGA 717 42.82 MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDTICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEWYEPDLNLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKILIKNLERFREEFAAVVKKECAEFLDSPEKFLRGMLNRN 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11851445 11853175 - CmoCh14G014620.1 Cmo14g01462 396728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01462 238 TIGRFAM PPR: pentatricopeptide repeat domain 162 194 IPR002885 -
Cmo14g01462 238 TIGRFAM PPR: pentatricopeptide repeat domain 127 160 IPR002885 -
Cmo14g01462 238 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 7 234 - -
Cmo14g01462 238 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Cmo14g01462 238 Pfam PPR repeat family 158 205 IPR002885 -
Cmo14g01462 238 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 7 234 IPR044190 GO:0000373|GO:0003723|GO:0009658
Cmo14g01462 238 Pfam PPR repeat 128 156 IPR002885 -
Cmo14g01462 238 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Cmo14g01462 238 Gene3D Tetratricopeptide repeat domain 56 223 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01462 K01183 E3.2.1.14; chitinase [EC:3.2.1.14] - csv:101222042 381.333
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01462 Cmo-Chr14:11851445 Cmo19g00833 Cmo-Chr19:8165668 1.04E-38 dispersed
Cmo14g01462 Cmo-Chr14:11851445 Cmo11g00901 Cmo-Chr11:4620186 1.20E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1286 . . . . . . . . . . . Cma14g01426 . Car14g01256 . . . . . . . . . . . . . . . . . . . Cone18ag0863 . . . . Cme07g01955 . . . . . . . . . . Cmo14g01462 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012863 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01462 Cmo_Chr14 FPKM 4.056526 4.055531 8.568837 10.136844 26.588892 25.747288 26.468571 8.364362 8.365242 8.034989