Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo14g01493 | ATGCTGATTTCTCGAGCTTCCGAGCTCGCCGGAATCCATGGAGGAGTCTCCGGCGGGGTTACTCTGTTGTCGGATGGAGTAGATTTGTCGGAGAAGAAGGTGGGTGTGCCGGCGGCCGGACGGGGAGGTTATGAACAGAAAAAGAAGACGTTGAGCCGGAGATTCTCTTTTCAAACAAGAAGTCAAGTTGATATTCTCGATGATGGTTATAAATGGAGAAAGTATGGACAGAAGGCTGTGAAGAACAACAAATTCCCAAGAAGCTACTACAGATGTACACACCAAGGGTGCAAAGTGAAGAAGCAAGTGCAAAGGCTAACTAGAGACGAAGGGGTGGTGGTCACAACTTATGAAGGCATCCACTCTCATCCCATTCTCAAATCGGCCGATAACTTCGAGTATATTCTGAGTCGCATGCAAATTTACGCTTCTTATTGA | 438 | 47.03 | MLISRASELAGIHGGVSGGVTLLSDGVDLSEKKVGVPAAGRGGYEQKKKTLSRRFSFQTRSQVDILDDGYKWRKYGQKAVKNNKFPRSYYRCTHQGCKVKKQVQRLTRDEGVVVTTYEGIHSHPILKSADNFEYILSRMQIYASY | 145 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 12003302 | 12004604 | + | CmoCh14G014930.1 | Cmo14g01493 | 396759 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo14g01493 | 145 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 45 | 142 | IPR044810 | GO:0003700 | |
Cmo14g01493 | 145 | SMART | WRKY_cls | 66 | 125 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo14g01493 | 145 | ProSiteProfiles | WRKY domain profile. | 61 | 126 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo14g01493 | 145 | Gene3D | WRKY domain | 51 | 125 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo14g01493 | 145 | Pfam | WRKY DNA -binding domain | 67 | 124 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo14g01493 | 145 | PANTHER | WRKY TRANSCRIPTION FACTOR 75-RELATED | 45 | 142 | - | - | |
Cmo14g01493 | 145 | SUPERFAMILY | WRKY DNA-binding domain | 58 | 125 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00767 | Cmo-Chr4:3843930 | Cmo14g01493 | Cmo-Chr14:12003302 | 1.50E-20 | dispersed | |
Cmo14g00740 | Cmo-Chr14:3779888 | Cmo14g01493 | Cmo-Chr14:12003302 | 7.55E-58 | dispersed | |
Cmo14g01493 | Cmo-Chr14:12003302 | Cmo14g02238 | Cmo-Chr14:15875010 | 6.67E-34 | dispersed | |
Cmo14g01493 | Cmo-Chr14:12003302 | Cmo06g01664 | Cmo-Chr6:11525088 | 5.34E-27 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11033 | PF03106 | WRKY | 8.90E-26 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo14g01493 | - | - | cmo:103494564 | 197.208 |