Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01493 ATGCTGATTTCTCGAGCTTCCGAGCTCGCCGGAATCCATGGAGGAGTCTCCGGCGGGGTTACTCTGTTGTCGGATGGAGTAGATTTGTCGGAGAAGAAGGTGGGTGTGCCGGCGGCCGGACGGGGAGGTTATGAACAGAAAAAGAAGACGTTGAGCCGGAGATTCTCTTTTCAAACAAGAAGTCAAGTTGATATTCTCGATGATGGTTATAAATGGAGAAAGTATGGACAGAAGGCTGTGAAGAACAACAAATTCCCAAGAAGCTACTACAGATGTACACACCAAGGGTGCAAAGTGAAGAAGCAAGTGCAAAGGCTAACTAGAGACGAAGGGGTGGTGGTCACAACTTATGAAGGCATCCACTCTCATCCCATTCTCAAATCGGCCGATAACTTCGAGTATATTCTGAGTCGCATGCAAATTTACGCTTCTTATTGA 438 47.03 MLISRASELAGIHGGVSGGVTLLSDGVDLSEKKVGVPAAGRGGYEQKKKTLSRRFSFQTRSQVDILDDGYKWRKYGQKAVKNNKFPRSYYRCTHQGCKVKKQVQRLTRDEGVVVTTYEGIHSHPILKSADNFEYILSRMQIYASY 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12003302 12004604 + CmoCh14G014930.1 Cmo14g01493 396759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01493 145 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 45 142 IPR044810 GO:0003700
Cmo14g01493 145 SMART WRKY_cls 66 125 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo14g01493 145 ProSiteProfiles WRKY domain profile. 61 126 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo14g01493 145 Gene3D WRKY domain 51 125 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo14g01493 145 Pfam WRKY DNA -binding domain 67 124 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo14g01493 145 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 45 142 - -
Cmo14g01493 145 SUPERFAMILY WRKY DNA-binding domain 58 125 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00767 Cmo-Chr4:3843930 Cmo14g01493 Cmo-Chr14:12003302 1.50E-20 dispersed
Cmo14g00740 Cmo-Chr14:3779888 Cmo14g01493 Cmo-Chr14:12003302 7.55E-58 dispersed
Cmo14g01493 Cmo-Chr14:12003302 Cmo14g02238 Cmo-Chr14:15875010 6.67E-34 dispersed
Cmo14g01493 Cmo-Chr14:12003302 Cmo06g01664 Cmo-Chr6:11525088 5.34E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11033 PF03106 WRKY 8.90E-26 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01493 - - cmo:103494564 197.208