Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01504 ATGGATGAGGTTTGCGAGGGTAAGGACTTTTCGTTCCCTAAGCACGAGGAGGTGGTGCTTGAGTATTGGTCTGATATCAGGGCATTTGAGACCCAGCTTGAGCGCACAAAGGACCTTCCTGAGTATATTTTTTATGATGGCCCTCCGTTCGCCACTGGTCTTCCACATTATGGTCACATCTTGGCGGGAACCATCAAGGACATTGTCACCCGGTATCAGGTTATGACCGGTCATCACGTGACTCGTCGCTTTGGATGGGACTGCCATGGATTGCCTGTTGAGAACGAGATTGATCAGAAGCTAGGGATCAAGAGGAGAGACGATGTGTTGAAGATGGGGATTGACAAGTACAATGAAGAATGCAGAAGTATAGTCACGAGATATGTGGGGGAATGGGAAAAAATCATCACGCGTACTGGTCGATGGATTGACTTTAAAAACGACTATAAGACTATGGACTTGAAATTCATGGAGAGTGTTTGGTGGGTCTTTTCTCAGCTCTTCGAGAAAGGTCTTGTCTATAAAGGCTTCAAGGTCATGCCATATAGTACTGGTTGCAAGACGCCACTTTCAAACTTCGAAGCTGGTCAAAGCTATAAGGATGTCCCTGATCCTGAAATCATGGTAACTTTTCCAGTACTCGGGGATCCGCAAAATGCAGCTTTTGTGGCTTGGACAACAACTCCATGGACCCTTCCGAGTAATCTTGCCCTTTGTGTTAATGCAAATTTTGTCTATGTGAAGGTTCGCAACAAGGCATCTGGAAAAGTTTATGTGGTTGCTAAATCCCGATTGTCAGCTCTACCTGTTGAGAAACAAAAAGTGAATGCACCAAATGGTTCTACCGAAGTTGTTAACAAGTCAAATCCTAAGAAAAAAGGTTCCTCAAATTCAAAAACAGAGAACTCAGTGGAGGACTCATATGAGGTATTGGAGGAAGTATTGGGAGCTTCTCTTGTGGGTAAAAAGTACGAGCCACTGTTTGATTACTTTAAAGAGTTCTCTGATGTGGCATTTAGAGTTGTTGCAGATAATTATGTAACTGATGATAGTGGTACGGGTATTGTCCATTGTGCTCCTGCATTCGGTGAAGACGACTATCGTGTTTGCATTGAGAACCAAGTGATCAATAAGGGCGAGAATCTGATTGTTGCAGTCGATGACGATGGTTGCTTTACAACAAAGATTACTCAATTTTCTGGGCGTTACGTCAAGGATGCAGACAAAGATATAATTGAAGCCGTGAAGGCACAAGGGAGGCTTGTTAAATCGGGAAGCTTTACCCATTCTTATCCTTTCTGCTGGAGATCTGATACTCCCCTAATCTACAGGGCTGTCCCAAGCTGGTTTGTCCGAGTTGAGAAATTGAAGGAGAAATTACTGGAAAACAACGAGAAGACTTACTGGGTGCCTGATTTTGTGAAGGAGAAAAGGTTCCATAATTGGCTAGAGAATGCGAGAGATTGGGCTGTCAGCCGTAGTAGATTTTGGGGAACTCCTCTCCCTGTCTGGGTTAGCGAGGATGGAGAGGAAATACTGGTCATGGATTCAATTGAGAAACTTGAACAGCTTTCTGGTGTCAAGGTGTTTGATTTGCATCGGCACAAGATTGATCACATTACTATTCCATCTAGAAGAGGTCCTGAATATGGTGTGCTTCGGAGGGTAGATGACGTGTTTGATTGCTGGTTCGAGAGTGGGTCTATGCCATATGCATATATTCATTATCCATTTGAAAACGTTGAGCTTTTTGAGAAAAACTTTCCTGGTCACTTTGTGGCAGAAGGGCTTGATCAAACTCGTGGATGGTTCTATACTCTCATGGTTCTATCTACTGCTTTATTTGGGAAGCCTGCATTTAGGAACCTTATTTGTAATGGCCTTGTCCTTGCTGAGGATGGAAAAAAGATGAGCAAAAGGTTGAAAAATTATCCTTCACCAATGGAAATCATAAATGACTATGGAGCTGATGCTCTGCGATTATACCTTATAAATTCTCCAGTTGTACGTGCAGAGACTTTACGCTTCAAGAAGGAGGGCGTTTTTGGTGTTGTCAGGGATGTTTTCCTGCCATGGTATAATGCCTATAGATTTCTTGTTCAGAATGCTAAGAGGCTCGAAATTGAGGGATTTGCACCATTTTCTCCCGTAGATCAAGCTACCCTTCAAAAGTCGTTCAATGTGCTTGACCAATGGATAAACTCTGCCACCCAGAGTTTAGTATATTTTGTCAGAAAAGAAATGGATGGGTACCGACTCTACACGGTAGTTCCATATCTTCTAAAGTTTCTTGACAACCTTACAAATATTTATGTGAGGTTCAACCGCAAGAGACTAAAGGGCCGTACTGGGGAAGAAGACTGCAGGATAGCACTCTCTACTCTGTACCATGTCCTTTTAACGTCTTGTATGGTCATGGCTCCATTTACACCATTTTTCACCGAAGCTTTATATCAAAACTTACGGAAGGTTTCTGATGGGTCAGAGGAAAGCATTCATTACTGTTCTTATCCTCAGGAAGGAGGAAAGAGAGGTGAAAGAATTGAAGAAAGTGTTACAAGGATGATGACAATTATTGATCTTGCTCGCAACATTCGGGAGCGTCATAACAAGCCTCTTAAAACACCTTTGAGAGAAATGATAGTGGTTCATCCTGACAAAGATTTTCTTGATGACATAGCCGGAAAGCTAAGAGAGTACGTTCTCGAGGAATTAAATATAAGATCTCTTATCCCATGCAATGATACGTTGAAGTATGCATCTCTTCGTGCTGAGCCAGATTTTAGTGTGTTGGGAAAGCGTCTTGGAAAAGCTATGGGAGTCGTGGCAAAGGAAGTCAAAGCAATGTCACAGGAAGATATCTTGGCTTTCGAGAAAGTGGGAGAAGTTACTATTGCTACTCATTGTTTAAGGTTATCTGACATAAAGGTTGTTCGTGATTTCAAACGACCTGATGGTATGACAGACAAGGAAATGGATGCTGCTGGGGATGGTGATGTACTAGTGATTTTGGATTTACGTCCAGATGAATCTCTATTCGAGGCTGGTGTTGCTCGTGAGATTGTTAATAGAATCCAGAAGTTGAGAAAGAAAGCTGCCCTTGAACCTACCGACTCCGTAGAGGTGTATTTTCGATCACAAGATGAGGATGCATCAGTTGCGCAGAGAGTTTTAAATGCACAGGAACTATACATAAGCGAGGCAATCGGTTCACCCTTGCTTCCGTCTGCTTTGTTGCCTTCACATGCAGTCACGCTTGCTGAAGAGAGTTTCCAAAATGTAGCCGGGATTTCATTTTCGATTATCTTGGCCAGACCGGTACCCGTATTCAATTCGGACGCTGTGACTGCTCTATATAAAGGTAACGAGAAATTCGCCCGAGCACTCGAGGTCTACCTGCTCTCGAGAGACCTCTCCAACTTGAAGACCGAGTTCTCTGGAAATGGCAAGATGAGGGTTGATTACATTGATGGGCAGCCGGGTGTGGAAGTGGCACTGGGAGAGCATGTTTTCTTGACGGCCGGCGACAAGTTTCTGAAGGCCAAGTCTTCATAA 3555 43.4 MDEVCEGKDFSFPKHEEVVLEYWSDIRAFETQLERTKDLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQVMTGHHVTRRFGWDCHGLPVENEIDQKLGIKRRDDVLKMGIDKYNEECRSIVTRYVGEWEKIITRTGRWIDFKNDYKTMDLKFMESVWWVFSQLFEKGLVYKGFKVMPYSTGCKTPLSNFEAGQSYKDVPDPEIMVTFPVLGDPQNAAFVAWTTTPWTLPSNLALCVNANFVYVKVRNKASGKVYVVAKSRLSALPVEKQKVNAPNGSTEVVNKSNPKKKGSSNSKTENSVEDSYEVLEEVLGASLVGKKYEPLFDYFKEFSDVAFRVVADNYVTDDSGTGIVHCAPAFGEDDYRVCIENQVINKGENLIVAVDDDGCFTTKITQFSGRYVKDADKDIIEAVKAQGRLVKSGSFTHSYPFCWRSDTPLIYRAVPSWFVRVEKLKEKLLENNEKTYWVPDFVKEKRFHNWLENARDWAVSRSRFWGTPLPVWVSEDGEEILVMDSIEKLEQLSGVKVFDLHRHKIDHITIPSRRGPEYGVLRRVDDVFDCWFESGSMPYAYIHYPFENVELFEKNFPGHFVAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKRLKNYPSPMEIINDYGADALRLYLINSPVVRAETLRFKKEGVFGVVRDVFLPWYNAYRFLVQNAKRLEIEGFAPFSPVDQATLQKSFNVLDQWINSATQSLVYFVRKEMDGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRTGEEDCRIALSTLYHVLLTSCMVMAPFTPFFTEALYQNLRKVSDGSEESIHYCSYPQEGGKRGERIEESVTRMMTIIDLARNIRERHNKPLKTPLREMIVVHPDKDFLDDIAGKLREYVLEELNIRSLIPCNDTLKYASLRAEPDFSVLGKRLGKAMGVVAKEVKAMSQEDILAFEKVGEVTIATHCLRLSDIKVVRDFKRPDGMTDKEMDAAGDGDVLVILDLRPDESLFEAGVAREIVNRIQKLRKKAALEPTDSVEVYFRSQDEDASVAQRVLNAQELYISEAIGSPLLPSALLPSHAVTLAEESFQNVAGISFSIILARPVPVFNSDAVTALYKGNEKFARALEVYLLSRDLSNLKTEFSGNGKMRVDYIDGQPGVEVALGEHVFLTAGDKFLKAKSS 1184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12060666 12076842 + CmoCh14G015040.1 Cmo14g01504 396770

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01504 1184 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 201 431 IPR009008 GO:0002161|GO:0006418
Cmo14g01504 1184 SUPERFAMILY Nucleotidylyl transferase 10 686 - -
Cmo14g01504 1184 PRINTS Isoleucyl-tRNA synthetase signature 42 53 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Cmo14g01504 1184 PRINTS Isoleucyl-tRNA synthetase signature 223 246 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Cmo14g01504 1184 PRINTS Isoleucyl-tRNA synthetase signature 555 568 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Cmo14g01504 1184 PRINTS Isoleucyl-tRNA synthetase signature 595 604 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Cmo14g01504 1184 CDD IleRS_core 440 676 - -
Cmo14g01504 1184 Pfam tRNA synthetases class I (I, L, M and V) 19 270 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cmo14g01504 1184 Pfam tRNA synthetases class I (I, L, M and V) 305 674 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cmo14g01504 1184 Pfam Anticodon-binding domain of tRNA ligase 730 880 IPR013155 GO:0004812|GO:0006418
Cmo14g01504 1184 PANTHER BNAUNNG00270D PROTEIN 1 1113 - -
Cmo14g01504 1184 PANTHER SOLEUCYL-TRNA SYNTHETASE 1 1113 IPR023586 GO:0004822
Cmo14g01504 1184 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 691 940 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cmo14g01504 1184 Pfam Domain of unknown function (DUF5915) 899 1061 - -
Cmo14g01504 1184 CDD IleRS_core 40 182 - -
Cmo14g01504 1184 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 49 60 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cmo14g01504 1184 Hamap Isoleucine--tRNA ligase [ileS]. 2 1098 IPR023586 GO:0004822
Cmo14g01504 1184 CDD Anticodon_Ia_Ile_ABEc 676 863 IPR033709 GO:0000049
Cmo14g01504 1184 Gene3D HUPs 388 674 IPR014729 -
Cmo14g01504 1184 Gene3D HUPs 4 210 IPR014729 -
Cmo14g01504 1184 MobiDBLite consensus disorder prediction 276 304 - -
Cmo14g01504 1184 Gene3D - 678 870 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01504 K01870 IARS, ileS; isoleucyl-tRNA synthetase [EC:6.1.1.5] - csv:101212830 2270.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00496 Cmo-Chr12:3036401 Cmo14g01504 Cmo-Chr14:12060666 0 dispersed
Cmo14g01504 Cmo-Chr14:12060666 Cmo14g01656 Cmo-Chr14:13082576 1.02E-74 dispersed
Cmo14g01504 Cmo-Chr14:12060666 Cmo03g00578 Cmo-Chr3:5607809 5.65E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1190 . . . . . . . . . . . Cma14g01465 . Car14g01301 . . Cpe03g01233 . . . . . . . . . . . . . . . . . . . . . Cme07g01901 . Blo07g00070 Bda11g00442 . . Bpe13g00734 . Bma06g01423 Sed09g0135 . Cmo14g01504 . . . . . . Bhi12g02569 Tan06g2212 Cmetu10g0535 Lac12g1942 Hepe03g0423 . Lcy13g0545 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007512 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 0 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01504 Cmo_Chr14 FPKM 33.760315 32.623631 30.676723 33.831036 45.920841 46.593765 43.367828 44.16798 48.107838 47.841396