Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01508 ATGTTTCTTGCTTGTCCTATTCGGAACTCGGCGCTTTCGATTACATTTGCGCGAAGAATTACATGCACTGGCATGTCGAAACGAAGTTCATCTTCCATGCCAATAACCTCAAACGAATCCCCTCCAGGAATTTCAGGTGTTCAATCTTCCAATGGCGTTTCTAAGTCTGAAACTCGTGTATTCGTGAGGAGAACAGTGAAAAAGAAGGCAGAAGGTCAATATAGCGGGCTTGACCTAGAACTTAAAGACGACGTTAAACGTTGTTGTCCTCCTGATATTGAAGATTTTGCATTCAAAAGAACAAAGGATTCCCCCGGATCAAGGAAGTCTAAGCCTCCTCTAGATACCCTTCTCCCCAGAATTGAAGATTCTAACCCAACTAGACAAAAAGGCGTTGCAGAAGGAGGTAAAACCCCTGTGGATTGGGAAAAAGTCCTTGAAGGAATTCGGGAAATGAGATCGTCTGAAGTAGCTCCAGTAGACACCATGGGATGTGGGCGAGCTGGTAGTACTCTTCCTCCAAAGGAAAGAAGATTTGCTGTCTTGGCATCTTCTCTTCTCTCAAGCCAAACCAAAGACCACGTAACTCATGGAGCAGCATTGCGTCTCCAAGAAAGTGGTCTTCTTACAGCTGATGCCATGGACAAAGCTGATGAATCAACCATTAAAAGCTTGATTTACCCTGTTGGATTTTATTCTACAAAGGCTAAAAATTTGAAGAAGATTGCCAAAATATGTCTTATGAAGTATGGTGGGGACATACCTAGATCATTGGAGGAGCTACTTCTACTGCCTGGGATAGGCCCTAAGATTGCACATTTGATCATGATTATGGCGTGGAACGATGTTCGGGGGATATGTGTCGATACTCATGTTCATCGCATTTGCAATCGGCTTGGATGGGTGTCTGGGAAAGGCTCGAAACAGAAAACTTCCTCTCCTGAAGAAACTCGAGTGGCATTAGAACTATGGCTGCCAAAGGAAGAATGGGTTCCAATTAATCCTCTTCTGGTTGGATTTGGACAGACTATTTGCACTCCCCTGAGACCCAAATGTGGAAATTGCAGTGTTAGCCACTTGTGTCCATCGGCATTCAAGGAGACTTCAAGCCCATCTCCCAAATTAAAGCGTTCAAGTTCCACCAATTATCTTTACTGGCCTGAGTATAATCCTCAATATTTGGTCACTAAGAACTGTGTATCTTTAATCCAACTCTCAACAGAGGACATTAAAAGGAACCTCATGATGGCTGAAAGAAGCTGA 1263 43.63 MFLACPIRNSALSITFARRITCTGMSKRSSSSMPITSNESPPGISGVQSSNGVSKSETRVFVRRTVKKKAEGQYSGLDLELKDDVKRCCPPDIEDFAFKRTKDSPGSRKSKPPLDTLLPRIEDSNPTRQKGVAEGGKTPVDWEKVLEGIREMRSSEVAPVDTMGCGRAGSTLPPKERRFAVLASSLLSSQTKDHVTHGAALRLQESGLLTADAMDKADESTIKSLIYPVGFYSTKAKNLKKIAKICLMKYGGDIPRSLEELLLLPGIGPKIAHLIMIMAWNDVRGICVDTHVHRICNRLGWVSGKGSKQKTSSPEETRVALELWLPKEEWVPINPLLVGFGQTICTPLRPKCGNCSVSHLCPSAFKETSSPSPKLKRSSSTNYLYWPEYNPQYLVTKNCVSLIQLSTEDIKRNLMMAERS 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12092139 12098227 + CmoCh14G015080.1 Cmo14g01508 396774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01508 420 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 67 378 - -
Cmo14g01508 420 SUPERFAMILY DNA-glycosylase 149 374 IPR011257 GO:0003824|GO:0006281
Cmo14g01508 420 ProSitePatterns Endonuclease III family signature. 252 281 IPR004036 -
Cmo14g01508 420 CDD ENDO3c 179 341 IPR003265 GO:0006284
Cmo14g01508 420 Pfam HhH-GPD superfamily base excision DNA repair protein 184 311 IPR003265 GO:0006284
Cmo14g01508 420 Gene3D - 278 367 IPR023170 -
Cmo14g01508 420 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 67 378 - -
Cmo14g01508 420 MobiDBLite consensus disorder prediction 26 57 - -
Cmo14g01508 420 Gene3D Hypothetical protein; domain 2 170 277 - -
Cmo14g01508 420 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 345 361 IPR004035 -
Cmo14g01508 420 MobiDBLite consensus disorder prediction 97 137 - -
Cmo14g01508 420 SMART ccc3 344 364 IPR003651 GO:0051539
Cmo14g01508 420 Hamap Endonuclease III-like protein 1 [NTHL1]. 138 367 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Cmo14g01508 420 Pfam Helix-hairpin-helix motif 249 276 IPR000445 GO:0003677
Cmo14g01508 420 SMART endo3end 187 343 IPR003265 GO:0006284
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01508 K10773 NTH; endonuclease III [EC:4.2.99.18] - csv:101212347 653.669
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01508 Cmo-Chr14:12092139 Cmo17g01342 Cmo-Chr17:10490105 4.33E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1201 . . . . . . . . . . . Cma14g01469 . Car14g01306 . . Cpe03g01238 Bhi01g02693 . . . Hepe05g1227 . Lcy11g1140 . . . . . . . . . . Cone11ag0617 . . . Cme07g01894 . . Bda11g00458 . . . . Bma06g01418 . . Cmo14g01508 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010237 1 4 0 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01508 Cmo_Chr14 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0