Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01511 ATGTCTTCGCAAGATCCACTCCCGAAATGGGCATCGAAGCCTTGTGTAATGGGCATCGACGAAGCTGGTCGAGGCCCTGTTTTAGGGCCAATGGTGTATGGATGCTTGTACTGCACTCGTTCCTATTTGAAAGAACTTTCGTCTTTGAATTTTGCAGACTCAAAAGCATTAAAAGAAGAGAAGAGGGAGGAATTGTTTGAAGGATTGAAGACTAATGAGTCAATTGGATGGGCTGTTGATGTCATAGATCCTCGGGAACTTTCATCCAAAATGCTAAATAAAGTGAAGATAAACCTAAATGAAATATCACATGACTCTGCAATGGGTCTGGTTACCAAGGTTCTAGGCATGGGAGTTCTTTTAACTGAGGTTTATGTGGATACTGTTGGAGATCCTGAAAAGTACAGAATCAAGTTATCTGAAAAATTTCCCAATGTAAAATTTGTAGTTGCAAAGAAGGCTGATAGTTTATATCCTGTTGTCAGTGGGGCAAGCATAGTTGCAAAGGTCACAAGAGATCGTGTGTTGCGGGATTGGGCATTGGAGGAAACAGCTGAAAACATGCATAGAAACTTTGGTTCTGGATACCCTGGAGATCCAACAACTAAATGTTGGTTAGAAGATCACAAGCACTCGGTATTTGGGTTCCCCACATTGGTCCGCTTCAGTTGGGGTACCTGCACTTCATATTTCAAAGACATTGTTGAAGTATCATGGGAATCAGACAAAGTGGATGAAGATGGGGCTACGGGTGGAAGTGGCTATGTATGTGATGCTTCGTCTTTTGATCCAATGTCTCGTTGCTGCCTAGGGAAAGGGGAAAAATTTCCTTGTCATGGATGCAATCTTGTTTCACAATGTTGTAATTCCTACGAATATTGTGTTTCATGCTGCCAGGATCCTTCAAGGACAAAAAGGGAGCAAATACTAAAAATAAAAATTGCTAAGCCTTCCACTGCAGGGACATATGCCGGTGTGTTTGATTTCTGTGTTGGGAGGTGTCGTCATAATTCGGAGAGTGTTGTGCACGAAAATGCTTATCGCAGCGATTACCATCATTGCTTTTCTCTGCCGTCATATTCTTCAGGAGTCAATGGCACGGAACTAGAATTCAAACTCAACGGCGTCAACGTCATTATTGGAAGACAAGGAGAGTCATGTGATTCAGTTTGCAAGACAAATGGACAATCATGCATCCCAAACAAGCTTATGGTCCTAAATCACTGTAACATTATGCAAAAATACTTGAGCTGCAAAGGAGGTTGCTTACCAAGTGTTGGGCCTGATCAACCTGCTGAAGTTGCTTATAATTCTCCTAAAGAACTGTTTACTTTTAAGGAATTCCATCAGTTTCATGCAGCAGATAGAAGGAAGTTGAAGGAGATCGAAAAACGGCGAATTGTAGAACTAGTTAAGACATATTTCTGTTCATGTGTTGAACTCGAATAG 1449 41.55 MSSQDPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCTRSYLKELSSLNFADSKALKEEKREELFEGLKTNESIGWAVDVIDPRELSSKMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFVVAKKADSLYPVVSGASIVAKVTRDRVLRDWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTCTSYFKDIVEVSWESDKVDEDGATGGSGYVCDASSFDPMSRCCLGKGEKFPCHGCNLVSQCCNSYEYCVSCCQDPSRTKREQILKIKIAKPSTAGTYAGVFDFCVGRCRHNSESVVHENAYRSDYHHCFSLPSYSSGVNGTELEFKLNGVNVIIGRQGESCDSVCKTNGQSCIPNKLMVLNHCNIMQKYLSCKGGCLPSVGPDQPAEVAYNSPKELFTFKEFHQFHAADRRKLKEIEKRRIVELVKTYFCSCVELE 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12113749 12124598 + CmoCh14G015110.1 Cmo14g01511 396777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01511 482 SUPERFAMILY Ribonuclease H-like 15 232 IPR012337 -
Cmo14g01511 482 CDD RNase_HII_eukaryota_like 17 233 - -
Cmo14g01511 482 PANTHER RIBONUCLEASE 7 254 - -
Cmo14g01511 482 PANTHER RIBONUCLEASE H2 SUBUNIT A 7 254 IPR001352 GO:0003723|GO:0004523
Cmo14g01511 482 Pfam SREBP regulating gene protein 252 355 IPR019352 GO:2000640
Cmo14g01511 482 Gene3D Ribonuclease hii. Domain 2 187 234 IPR023160 GO:0004523
Cmo14g01511 482 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 236 IPR024567 GO:0004523
Cmo14g01511 482 TIGRFAM TIGR00729: ribonuclease HII 16 228 IPR004649 GO:0004523|GO:0016070
Cmo14g01511 482 Pfam Ribonuclease HII 17 227 IPR024567 GO:0004523
Cmo14g01511 482 Gene3D - 2 186 IPR036397 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01511 K10743 RNASEH2A; ribonuclease H2 subunit A [EC:3.1.26.4] - csv:101210143 499.204
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01651 Cmo14g01511 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01511 Cmo-Chr4:7732704 Cmo14g01511 Cmo-Chr14:12113749 2.09E-08 transposed
Cmo14g01511 Cmo-Chr14:12113749 Cmo06g01651 Cmo-Chr6:11461183 6.27E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1206 . . . . . . . . . . Cma06g01649 Cma14g01474 Car06g01400 Car14g01312 Sed12g0636 Cpe08g00084 Cpe03g01242 Bhi01g02686 Tan10g1282 Cmetu07g1873 . Hepe05g1237 . . . . . . . . . . . . Cone11ag0619 . . . Cme07g01887 . . Bda11g00453 . . Bpe13g00742 . . . Cmo06g01651 Cmo14g01511 . . . . . . . . . . . . . Cla07g01492 Cam07g1588 Cec07g1686 Cco07g1649 Clacu07g1579 Cmu07g1547 Cre07g1924 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo09g01339 . 106 797 Core DNA Replication Machinery Family AT4G14700 66.9 2.2e-270 929.1
Cmo09g01339 . 73 797 Core DNA Replication Machinery Family AT4G12620 67.4 2.5e-282 968.8
Cmo12g00468 . 2 361 Core DNA Replication Machinery Family AT2G37560 67.5 7.5e-143 504.2
Cmo02g01001 . 21 361 Core DNA Replication Machinery Family AT5G16690 54.4 1.5e-100 364.8
Cmo04g01157 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.5 1.9e-156 549.7
Cmo17g00416 . 3 520 Core DNA Replication Machinery Family AT4G29910 57.2 1.6e-166 583.6
Cmo05g00872 . 1 183 Core DNA Replication Machinery Family AT1G26840 70.5 3.6e-66 249.2
Cmo06g01695 . 894 1566 Core DNA Replication Machinery Family AT1G79150 50.9 9.1e-195 677.9
Cmo14g01078 . 9 939 Core DNA Replication Machinery Family AT1G44900 75.3 0.0e+00 1339.3
Cmo06g01740 . 1 950 Core DNA Replication Machinery Family AT1G44900 74.2 0.0e+00 1328.2
Cmo07g00117 CST 1 579 Core DNA Replication Machinery Family AT5G46280 80.5 3.0e-266 914.8
Cmo03g01381 CST 1 196 Core DNA Replication Machinery Family AT5G46280 50.6 2.8e-62 237.3
Cmo19g00696 . 1 814 Core DNA Replication Machinery Family AT2G16440 73.5 0.0e+00 1090.1
Cmo11g01110 . 200 882 Core DNA Replication Machinery Family AT2G16440 60.2 2.3e-246 849.4
Cmo12g01194 . 951 1685 Core DNA Replication Machinery Family AT2G07690 78.5 0.0e+00 1115.5
Cmo07g00005 . 528 1322 Core DNA Replication Machinery Family AT5G44635 70.1 0.0e+00 1120.1
Cmo17g01008 . 8 719 Core DNA Replication Machinery Family AT4G02060 85.7 0.0e+00 1220.7
Cmo08g00461 . 11 722 Core DNA Replication Machinery Family AT4G02060 85.5 0.0e+00 1216.4
Cmo20g00379 . 30 518 Core DNA Replication Machinery Family AT2G29680 60.8 6.6e-164 574.7
Cmo20g00379 . 30 479 Core DNA Replication Machinery Family AT1G07270 58.7 7.1e-144 508.1
Cmo08g00224 . 222 814 Core DNA Replication Machinery Family AT3G25100 76.9 8.1e-262 900.2
Cmo17g01242 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.5 2.7e-257 885.2
Cmo06g00348 . 39 872 Core DNA Replication Machinery Family AT3G09660 67.5 3.2e-306 1048.1
Cmo19g00482 . 16 686 Core DNA Replication Machinery Family AT2G14050 64.6 4.4e-245 844.7
Cmo20g00749 . 1 438 Core DNA Replication Machinery Family AT2G20980 50.9 1.9e-110 396.7
Cmo09g00762 . 7 968 Core DNA Replication Machinery Family AT1G77320 50.4 1.3e-259 893.6
Cmo08g00638 . 1 200 Core DNA Replication Machinery Family AT1G80190 66.8 2.3e-75 279.3
Cmo07g01233 . 1 179 Core DNA Replication Machinery Family AT3G12530 58.7 6.7e-56 214.2
Cmo04g03028 . 1 184 Core DNA Replication Machinery Family AT1G19080 64.7 1.1e-63 240.4
Cmo04g03028 . 1 184 Core DNA Replication Machinery Family AT3G55490 64.7 1.1e-63 240.4
Cmo14g02113 . 15 164 Core DNA Replication Machinery Family AT5G49010 66.7 5.8e-52 201.4
Cmo02g00525 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1768.4
Cmo18g00706 . 2 610 Core DNA Replication Machinery Family AT1G67630 63.9 1.6e-220 763.1
Cmo08g00172 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.7 2.3e-185 646.0
Cmo09g01248 . 1 450 Core DNA Replication Machinery Family AT5G41880 64.6 2.1e-177 619.4
Cmo07g00846 . 1 1086 Core DNA Replication Machinery Family AT5G63960 81.1 0.0e+00 1808.1
Cmo14g00422 . 1 438 Core DNA Replication Machinery Family AT2G42120 76.5 4.2e-207 718.0
Cmo08g00172 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.7 2.3e-185 646.0
Cmo02g01374 . 1 2094 Core DNA Replication Machinery Family AT1G08260 70.5 0.0e+00 2952.9
Cmo02g01374 . 9 2200 Core DNA Replication Machinery Family AT2G27120 67.4 0.0e+00 2919.8
Cmo01g00788 . 510 1031 Core DNA Replication Machinery Family AT5G22110 65.4 8.1e-191 664.1
Cmo02g01336 . 1 928 Core DNA Replication Machinery Family AT5G22010 62.5 2.2e-303 1038.9
Cmo16g01059 . 3 332 Core DNA Replication Machinery Family AT1G63160 89.7 1.4e-170 596.3
Cmo03g00225 . 1 354 Core DNA Replication Machinery Family AT5G27740 83.3 2.4e-176 615.5
Cmo01g01421 . 1 336 Core DNA Replication Machinery Family AT1G21690 80.1 1.6e-150 529.6
Cmo15g00675 CST 1 363 Core DNA Replication Machinery Family AT1G77470 76.3 7.0e-155 544.3
Cmo04g02487 CST 1 382 Core DNA Replication Machinery Family AT1G77470 70.5 9.2e-147 517.3
Cmo05g01408 . 26 618 Core DNA Replication Machinery Family AT2G06510 69.0 1.2e-252 869.8
Cmo06g00609 CST 34 701 Core DNA Replication Machinery Family AT2G06510 52.1 1.3e-201 700.3
Cmo16g01260 CST 34 686 Core DNA Replication Machinery Family AT2G06510 52.2 5.4e-200 694.9
Cmo11g00212 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.1 1.5e-242 836.3
Cmo06g00609 CST 10 808 Core DNA Replication Machinery Family AT5G45400 51.6 2.4e-230 796.2
Cmo16g01260 CST 10 785 Core DNA Replication Machinery Family AT5G45400 51.4 3.3e-224 775.8
Cmo11g00212 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.0 2.3e-235 812.4
Cmo06g00609 CST 5 822 Core DNA Replication Machinery Family AT4G19130 53.3 7.5e-231 797.7
Cmo16g01260 CST 5 772 Core DNA Replication Machinery Family AT4G19130 54.8 1.3e-227 786.9
Cmo09g00511 CST 1 268 Core DNA Replication Machinery Family AT2G24490 50.2 1.2e-69 260.8
Cmo01g01597 CST 1 167 Core DNA Replication Machinery Family AT2G24490 52.2 3.4e-45 179.5
Cmo11g01256 . 1 172 Core DNA Replication Machinery Family AT5G26680 91.9 4.6e-86 315.8
Cmo11g01257 . 18 183 Core DNA Replication Machinery Family AT5G26680 59.5 5.3e-58 222.6
Cmo14g01511 CST 1 262 Core DNA Replication Machinery Family AT2G25100 66.0 7.0e-99 357.8
Cmo20g00553 . 44 804 Core DNA Replication Machinery Family AT1G08130 68.0 2.9e-291 998.4
Cmo20g00553 . 204 804 Core DNA Replication Machinery Family AT1G49250 68.6 9.6e-240 827.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012218 1 1 1 2 1 1 2 1 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01511 Cmo_Chr14 FPKM 7.472959 6.519799 6.963232 9.037545 12.516303 13.294032 16.180117 14.591146 13.842424 11.974281