Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01511 ATGTCTTCGCAAGATCCACTCCCGAAATGGGCATCGAAGCCTTGTGTAATGGGCATCGACGAAGCTGGTCGAGGCCCTGTTTTAGGGCCAATGGTGTATGGATGCTTGTACTGCACTCGTTCCTATTTGAAAGAACTTTCGTCTTTGAATTTTGCAGACTCAAAAGCATTAAAAGAAGAGAAGAGGGAGGAATTGTTTGAAGGATTGAAGACTAATGAGTCAATTGGATGGGCTGTTGATGTCATAGATCCTCGGGAACTTTCATCCAAAATGCTAAATAAAGTGAAGATAAACCTAAATGAAATATCACATGACTCTGCAATGGGTCTGGTTACCAAGGTTCTAGGCATGGGAGTTCTTTTAACTGAGGTTTATGTGGATACTGTTGGAGATCCTGAAAAGTACAGAATCAAGTTATCTGAAAAATTTCCCAATGTAAAATTTGTAGTTGCAAAGAAGGCTGATAGTTTATATCCTGTTGTCAGTGGGGCAAGCATAGTTGCAAAGGTCACAAGAGATCGTGTGTTGCGGGATTGGGCATTGGAGGAAACAGCTGAAAACATGCATAGAAACTTTGGTTCTGGATACCCTGGAGATCCAACAACTAAATGTTGGTTAGAAGATCACAAGCACTCGGTATTTGGGTTCCCCACATTGGTCCGCTTCAGTTGGGGTACCTGCACTTCATATTTCAAAGACATTGTTGAAGTATCATGGGAATCAGACAAAGTGGATGAAGATGGGGCTACGGGTGGAAGTGGCTATGTATGTGATGCTTCGTCTTTTGATCCAATGTCTCGTTGCTGCCTAGGGAAAGGGGAAAAATTTCCTTGTCATGGATGCAATCTTGTTTCACAATGTTGTAATTCCTACGAATATTGTGTTTCATGCTGCCAGGATCCTTCAAGGACAAAAAGGGAGCAAATACTAAAAATAAAAATTGCTAAGCCTTCCACTGCAGGGACATATGCCGGTGTGTTTGATTTCTGTGTTGGGAGGTGTCGTCATAATTCGGAGAGTGTTGTGCACGAAAATGCTTATCGCAGCGATTACCATCATTGCTTTTCTCTGCCGTCATATTCTTCAGGAGTCAATGGCACGGAACTAGAATTCAAACTCAACGGCGTCAACGTCATTATTGGAAGACAAGGAGAGTCATGTGATTCAGTTTGCAAGACAAATGGACAATCATGCATCCCAAACAAGCTTATGGTCCTAAATCACTGTAACATTATGCAAAAATACTTGAGCTGCAAAGGAGGTTGCTTACCAAGTGTTGGGCCTGATCAACCTGCTGAAGTTGCTTATAATTCTCCTAAAGAACTGTTTACTTTTAAGGAATTCCATCAGTTTCATGCAGCAGATAGAAGGAAGTTGAAGGAGATCGAAAAACGGCGAATTGTAGAACTAGTTAAGACATATTTCTGTTCATGTGTTGAACTCGAATAG 1449 41.55 MSSQDPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCTRSYLKELSSLNFADSKALKEEKREELFEGLKTNESIGWAVDVIDPRELSSKMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFVVAKKADSLYPVVSGASIVAKVTRDRVLRDWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTCTSYFKDIVEVSWESDKVDEDGATGGSGYVCDASSFDPMSRCCLGKGEKFPCHGCNLVSQCCNSYEYCVSCCQDPSRTKREQILKIKIAKPSTAGTYAGVFDFCVGRCRHNSESVVHENAYRSDYHHCFSLPSYSSGVNGTELEFKLNGVNVIIGRQGESCDSVCKTNGQSCIPNKLMVLNHCNIMQKYLSCKGGCLPSVGPDQPAEVAYNSPKELFTFKEFHQFHAADRRKLKEIEKRRIVELVKTYFCSCVELE 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12113749 12124598 + CmoCh14G015110.1 Cmo14g01511 396777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01511 482 SUPERFAMILY Ribonuclease H-like 15 232 IPR012337 -
Cmo14g01511 482 CDD RNase_HII_eukaryota_like 17 233 - -
Cmo14g01511 482 PANTHER RIBONUCLEASE 7 254 - -
Cmo14g01511 482 PANTHER RIBONUCLEASE H2 SUBUNIT A 7 254 IPR001352 GO:0003723|GO:0004523
Cmo14g01511 482 Pfam SREBP regulating gene protein 252 355 IPR019352 GO:2000640
Cmo14g01511 482 Gene3D Ribonuclease hii. Domain 2 187 234 IPR023160 GO:0004523
Cmo14g01511 482 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 236 IPR024567 GO:0004523
Cmo14g01511 482 TIGRFAM TIGR00729: ribonuclease HII 16 228 IPR004649 GO:0004523|GO:0016070
Cmo14g01511 482 Pfam Ribonuclease HII 17 227 IPR024567 GO:0004523
Cmo14g01511 482 Gene3D - 2 186 IPR036397 GO:0003676
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01651 Cmo14g01511 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01511 Cmo-Chr4:7732704 Cmo14g01511 Cmo-Chr14:12113749 2.09E-08 transposed
Cmo14g01511 Cmo-Chr14:12113749 Cmo06g01651 Cmo-Chr6:11461183 6.27E-115 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01511 K10743 - csv:101210143 499.204