Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01516 ATGGCTGGTCCTAAGCCTGGTAGCTCTGCCACTAAACCAAAAGCTGGCGGGAAAAAGGAGGTGAAGAAAGAGACTGGGTTGGGTCTCACCAATAAGAAGGACGACAACTTCGGAGAATGGTATTCCGAGGTGGTTGTCAGTGGGGAAATGATCGAGTATTACGATATCTCGGGCTGCTATATACTGAGGCCATGGGCGATGTCTATCTGGGAGACTATGCAAGTATTTTTTGATGCTGAAATTAAGAAAATGAAAATCAAGAATTGCTATTTTCCACTTTTTGTATCTCCCGGCGTCTTACAAAGAGAGAAAGATCATATAGAAGGTTTTGCTCCTGAGGTTGCTTGGGTGACAAAATCTGGGGAGTCTGACTTGGAAGTGCCGATTGCGATTCGTCCTACAAGTGAGACGGTTATGTACCCGTACTATTCGAAGTGGATCAGGGGTCACCGTGACTTGCCTTTGAAACTTAACCAGTGGAGTCGAGAGTTCCTTTGGCAGGAAGGTCATACTGCGTTTGCTACTAAGGATGAAGCGGATACCGAGGTTCTTGAAATATTGGAATTGTATAGGCGAATATACGAAGAATACCTGGCTATTCCTGTTATCAAGGGCAAGAAGAGCGAGATGGAGAAGTTTGCCGGTGGTCTTTACACCACGAGCGTGGAGGCATTTATCCCGAACACTGGTCGTGGAATTCAGGGTGCGACTTCACATTGCTTAGGTCAAAACTTCGCTAAAATGTTCGAAATCAACTTTGAAAACGAAAAGGGGGAGAAAGCTATGGTCTGGCAAAATTCGTGGGCGTATAGTACTAGAACGATTGGTGTGATGGTTATGGTTCATGGGGATGACAAGGGATTGGTGCTGCCTCCAAAAGTTGCGTCGGTTCAAGTTATTATCGTTCCCGTGCCTTACAAAGATGCAGACACTCAAGGAATTTTTGATGCTTGTTCTACCACTTTGGATACATTGTCCGAAGCAGGAATTCGTGCCGAGGTCGATTCTAGGGATAATTATTCTCCTGGATGGAAGTATTCTCACTGGGAAATGAAAGGTGTTCCGCTTAGGATCGAAATAGGGCCGAAGGACTTGGCAAACAATCAGGTACGTGCCGTTCGTCGTGATAACTCGGGGAAAAAGGACATACCTAGAGCTGCATTGGTTGAACAAGTGAAAGAATTGCTCGAAAGTATTCAACAAAGCCTGTTCGACGCGGCGAAAGAAAAACGAGATGTATGCATTCAAGTTATTAATACATGGGAAGAGTTTACTGAAGCACTCAGTCAGAAGAAAATGATATTGGCTCCATGGTGTGATGAAGAGGTACCAAATGTTTTGCATCTGGGAAGCCTGCAAAGAAATGGAGCTATTGGGGTCGAAGCTACTAAGCTATCAGCTCGTTTGTGTCTGCTACGGTCGATGGCTAGGTCTTTTCTGCAGGTTGCTGCTACGGAAGAGGTTGCTACCCCTCTCCGAGTGGTCCAGATTGAAGGATTGGTTATATTGAAGATAATCAAGCATTGCAAGGAGTTTTCACCAGCCCTTGTGACTGGGCAACTTCTTGGGTTAGATGTTGGTAGTGTTCTTGAAGTCACTAATTGCTTTCCTTTTCCGACTCGGGAGGAGGATGAGGAGATTGAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGATGTCTGAGAGAAGTCAATGTTGACAATAATACTGTCGGATGGTATCAGTCGACCTTCTTAGGTTCATATCAGACAGTAGAGCTGATTGAGACCTTTATGAATTATCAGGAAAATATTAGGCGATGTGTCTGTATAATTTATGACCCATCAAGGTCTAATCAAGGTGTCTTAGCTCTCAAAGCATTGAAGCTTTCAGATTCCTTTATGGAGCTTTACCGCAGTAACAACTTTACAGGAGAAAAGTTGAGAGAGAAGAACTTATCATGGGTGGATATTTTTGAGGAAATACCTATCAAAGTTTCAAATTCAGCCCTCATTAGTGCTTTTATGACGGAGCTTGAAGCTGACTCGCCAGTCACCCAGTGTGATTATGACCGCCTGCAACTTCCAGCGAATCCATTTATGGAGAGGAATGTGGAATTTCTGATTGAATGTATGGATGATTTGTCGGTCGAGCAGCAGAAGTTCCAATTCTATTATCGAAGCCTGACACGTCAGCAAGCTCAGCAGCAAGCATGGCTTCAGAAGAGGAGGACGGAGAATGCGATGAGGAAAGCAGCAGGAGAAGAACCTCTCCCTGAGGAGGATCCTACAAACCCCATCTTTAAACCACTCCCTGAGCCATCACGTTTGGATAGCTATCTCATAACGAATCAAATAGCAAACTACTGCAATCAAATTAATGGGGTTGCTGGACAGAGTTTCAACAAGCTTCATTTGATGAAGGCTTTGCACGACAGTTGA 2424 44.39 MAGPKPGSSATKPKAGGKKEVKKETGLGLTNKKDDNFGEWYSEVVVSGEMIEYYDISGCYILRPWAMSIWETMQVFFDAEIKKMKIKNCYFPLFVSPGVLQREKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWSREFLWQEGHTAFATKDEADTEVLEILELYRRIYEEYLAIPVIKGKKSEMEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINFENEKGEKAMVWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVASVQVIIVPVPYKDADTQGIFDACSTTLDTLSEAGIRAEVDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANNQVRAVRRDNSGKKDIPRAALVEQVKELLESIQQSLFDAAKEKRDVCIQVINTWEEFTEALSQKKMILAPWCDEEVPNVLHLGSLQRNGAIGVEATKLSARLCLLRSMARSFLQVAATEEVATPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIETFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEADSPVTQCDYDRLQLPANPFMERNVEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQAWLQKRRTENAMRKAAGEEPLPEEDPTNPIFKPLPEPSRLDSYLITNQIANYCNQINGVAGQSFNKLHLMKALHDS 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12147465 12161313 + CmoCh14G015160.1 Cmo14g01516 396782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01516 807 Hamap Proline--tRNA ligase [proS]. 30 486 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cmo14g01516 807 Pfam Anticodon binding domain 298 394 IPR004154 -
Cmo14g01516 807 SUPERFAMILY Class II aaRS ABD-related 286 411 - -
Cmo14g01516 807 MobiDBLite consensus disorder prediction 1 25 - -
Cmo14g01516 807 Gene3D Bira Bifunctional Protein; Domain 2 30 291 IPR045864 -
Cmo14g01516 807 Pfam C-terminal region of eIF3h 613 805 IPR045810 -
Cmo14g01516 807 CDD ProRS_anticodon_zinc 287 442 - -
Cmo14g01516 807 CDD ProRS_core_arch_euk 36 281 IPR033721 -
Cmo14g01516 807 PANTHER PROLYL-TRNA SYNTHETASE 9 442 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cmo14g01516 807 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 493 596 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cmo14g01516 807 MobiDBLite consensus disorder prediction 738 764 - -
Cmo14g01516 807 Gene3D - 415 445 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cmo14g01516 807 Gene3D - 292 412 IPR036621 -
Cmo14g01516 807 TIGRFAM proS_fam_I: proline--tRNA ligase 31 442 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cmo14g01516 807 SMART pad1_6 494 627 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cmo14g01516 807 CDD MPN_eIF3h 493 756 IPR027524 GO:0003743|GO:0005737|GO:0005852
Cmo14g01516 807 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 490 807 IPR027524 GO:0003743|GO:0005737|GO:0005852
Cmo14g01516 807 ProSiteProfiles MPN domain profile. 495 628 IPR037518 -
Cmo14g01516 807 PANTHER BIFUNCTIONAL GLUTAMATE/PROLINE--TRNA LIGASE 9 442 - -
Cmo14g01516 807 MobiDBLite consensus disorder prediction 738 752 - -
Cmo14g01516 807 Gene3D Cytidine Deaminase, domain 2 468 683 - -
Cmo14g01516 807 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 69 291 IPR006195 -
Cmo14g01516 807 SUPERFAMILY Class II aaRS and biotin synthetases 35 285 IPR045864 -
Cmo14g01516 807 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 130 279 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02278 Cmo-Chr4:16970332 Cmo14g01516 Cmo-Chr14:12147465 0 transposed
Cmo18g01292 Cmo-Chr18:12451328 Cmo14g01516 Cmo-Chr14:12147465 9.20E-118 transposed
Cmo14g01516 Cmo-Chr14:12147465 Cmo06g01644 Cmo-Chr6:11440290 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01516 K01881 - csv:101211125 857.44