Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo14g01516 | ATGGCTGGTCCTAAGCCTGGTAGCTCTGCCACTAAACCAAAAGCTGGCGGGAAAAAGGAGGTGAAGAAAGAGACTGGGTTGGGTCTCACCAATAAGAAGGACGACAACTTCGGAGAATGGTATTCCGAGGTGGTTGTCAGTGGGGAAATGATCGAGTATTACGATATCTCGGGCTGCTATATACTGAGGCCATGGGCGATGTCTATCTGGGAGACTATGCAAGTATTTTTTGATGCTGAAATTAAGAAAATGAAAATCAAGAATTGCTATTTTCCACTTTTTGTATCTCCCGGCGTCTTACAAAGAGAGAAAGATCATATAGAAGGTTTTGCTCCTGAGGTTGCTTGGGTGACAAAATCTGGGGAGTCTGACTTGGAAGTGCCGATTGCGATTCGTCCTACAAGTGAGACGGTTATGTACCCGTACTATTCGAAGTGGATCAGGGGTCACCGTGACTTGCCTTTGAAACTTAACCAGTGGAGTCGAGAGTTCCTTTGGCAGGAAGGTCATACTGCGTTTGCTACTAAGGATGAAGCGGATACCGAGGTTCTTGAAATATTGGAATTGTATAGGCGAATATACGAAGAATACCTGGCTATTCCTGTTATCAAGGGCAAGAAGAGCGAGATGGAGAAGTTTGCCGGTGGTCTTTACACCACGAGCGTGGAGGCATTTATCCCGAACACTGGTCGTGGAATTCAGGGTGCGACTTCACATTGCTTAGGTCAAAACTTCGCTAAAATGTTCGAAATCAACTTTGAAAACGAAAAGGGGGAGAAAGCTATGGTCTGGCAAAATTCGTGGGCGTATAGTACTAGAACGATTGGTGTGATGGTTATGGTTCATGGGGATGACAAGGGATTGGTGCTGCCTCCAAAAGTTGCGTCGGTTCAAGTTATTATCGTTCCCGTGCCTTACAAAGATGCAGACACTCAAGGAATTTTTGATGCTTGTTCTACCACTTTGGATACATTGTCCGAAGCAGGAATTCGTGCCGAGGTCGATTCTAGGGATAATTATTCTCCTGGATGGAAGTATTCTCACTGGGAAATGAAAGGTGTTCCGCTTAGGATCGAAATAGGGCCGAAGGACTTGGCAAACAATCAGGTACGTGCCGTTCGTCGTGATAACTCGGGGAAAAAGGACATACCTAGAGCTGCATTGGTTGAACAAGTGAAAGAATTGCTCGAAAGTATTCAACAAAGCCTGTTCGACGCGGCGAAAGAAAAACGAGATGTATGCATTCAAGTTATTAATACATGGGAAGAGTTTACTGAAGCACTCAGTCAGAAGAAAATGATATTGGCTCCATGGTGTGATGAAGAGGTACCAAATGTTTTGCATCTGGGAAGCCTGCAAAGAAATGGAGCTATTGGGGTCGAAGCTACTAAGCTATCAGCTCGTTTGTGTCTGCTACGGTCGATGGCTAGGTCTTTTCTGCAGGTTGCTGCTACGGAAGAGGTTGCTACCCCTCTCCGAGTGGTCCAGATTGAAGGATTGGTTATATTGAAGATAATCAAGCATTGCAAGGAGTTTTCACCAGCCCTTGTGACTGGGCAACTTCTTGGGTTAGATGTTGGTAGTGTTCTTGAAGTCACTAATTGCTTTCCTTTTCCGACTCGGGAGGAGGATGAGGAGATTGAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGATGTCTGAGAGAAGTCAATGTTGACAATAATACTGTCGGATGGTATCAGTCGACCTTCTTAGGTTCATATCAGACAGTAGAGCTGATTGAGACCTTTATGAATTATCAGGAAAATATTAGGCGATGTGTCTGTATAATTTATGACCCATCAAGGTCTAATCAAGGTGTCTTAGCTCTCAAAGCATTGAAGCTTTCAGATTCCTTTATGGAGCTTTACCGCAGTAACAACTTTACAGGAGAAAAGTTGAGAGAGAAGAACTTATCATGGGTGGATATTTTTGAGGAAATACCTATCAAAGTTTCAAATTCAGCCCTCATTAGTGCTTTTATGACGGAGCTTGAAGCTGACTCGCCAGTCACCCAGTGTGATTATGACCGCCTGCAACTTCCAGCGAATCCATTTATGGAGAGGAATGTGGAATTTCTGATTGAATGTATGGATGATTTGTCGGTCGAGCAGCAGAAGTTCCAATTCTATTATCGAAGCCTGACACGTCAGCAAGCTCAGCAGCAAGCATGGCTTCAGAAGAGGAGGACGGAGAATGCGATGAGGAAAGCAGCAGGAGAAGAACCTCTCCCTGAGGAGGATCCTACAAACCCCATCTTTAAACCACTCCCTGAGCCATCACGTTTGGATAGCTATCTCATAACGAATCAAATAGCAAACTACTGCAATCAAATTAATGGGGTTGCTGGACAGAGTTTCAACAAGCTTCATTTGATGAAGGCTTTGCACGACAGTTGA | 2424 | 44.39 | MAGPKPGSSATKPKAGGKKEVKKETGLGLTNKKDDNFGEWYSEVVVSGEMIEYYDISGCYILRPWAMSIWETMQVFFDAEIKKMKIKNCYFPLFVSPGVLQREKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWSREFLWQEGHTAFATKDEADTEVLEILELYRRIYEEYLAIPVIKGKKSEMEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINFENEKGEKAMVWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVASVQVIIVPVPYKDADTQGIFDACSTTLDTLSEAGIRAEVDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANNQVRAVRRDNSGKKDIPRAALVEQVKELLESIQQSLFDAAKEKRDVCIQVINTWEEFTEALSQKKMILAPWCDEEVPNVLHLGSLQRNGAIGVEATKLSARLCLLRSMARSFLQVAATEEVATPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIETFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEADSPVTQCDYDRLQLPANPFMERNVEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQAWLQKRRTENAMRKAAGEEPLPEEDPTNPIFKPLPEPSRLDSYLITNQIANYCNQINGVAGQSFNKLHLMKALHDS | 807 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 12147465 | 12161313 | + | CmoCh14G015160.1 | Cmo14g01516 | 396782 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo14g01516 | 807 | Hamap | Proline--tRNA ligase [proS]. | 30 | 486 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
Cmo14g01516 | 807 | Pfam | Anticodon binding domain | 298 | 394 | IPR004154 | - | |
Cmo14g01516 | 807 | SUPERFAMILY | Class II aaRS ABD-related | 286 | 411 | - | - | |
Cmo14g01516 | 807 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cmo14g01516 | 807 | Gene3D | Bira Bifunctional Protein; Domain 2 | 30 | 291 | IPR045864 | - | |
Cmo14g01516 | 807 | Pfam | C-terminal region of eIF3h | 613 | 805 | IPR045810 | - | |
Cmo14g01516 | 807 | CDD | ProRS_anticodon_zinc | 287 | 442 | - | - | |
Cmo14g01516 | 807 | CDD | ProRS_core_arch_euk | 36 | 281 | IPR033721 | - | |
Cmo14g01516 | 807 | PANTHER | PROLYL-TRNA SYNTHETASE | 9 | 442 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
Cmo14g01516 | 807 | Pfam | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 493 | 596 | IPR000555 | GO:0005515|GO:0008233|GO:0008237 | |
Cmo14g01516 | 807 | MobiDBLite | consensus disorder prediction | 738 | 764 | - | - | |
Cmo14g01516 | 807 | Gene3D | - | 415 | 445 | IPR017449 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
Cmo14g01516 | 807 | Gene3D | - | 292 | 412 | IPR036621 | - | |
Cmo14g01516 | 807 | TIGRFAM | proS_fam_I: proline--tRNA ligase | 31 | 442 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
Cmo14g01516 | 807 | SMART | pad1_6 | 494 | 627 | IPR000555 | GO:0005515|GO:0008233|GO:0008237 | |
Cmo14g01516 | 807 | CDD | MPN_eIF3h | 493 | 756 | IPR027524 | GO:0003743|GO:0005737|GO:0005852 | |
Cmo14g01516 | 807 | Hamap | Eukaryotic translation initiation factor 3 subunit H [EIF3H]. | 490 | 807 | IPR027524 | GO:0003743|GO:0005737|GO:0005852 | |
Cmo14g01516 | 807 | ProSiteProfiles | MPN domain profile. | 495 | 628 | IPR037518 | - | |
Cmo14g01516 | 807 | PANTHER | BIFUNCTIONAL GLUTAMATE/PROLINE--TRNA LIGASE | 9 | 442 | - | - | |
Cmo14g01516 | 807 | MobiDBLite | consensus disorder prediction | 738 | 752 | - | - | |
Cmo14g01516 | 807 | Gene3D | Cytidine Deaminase, domain 2 | 468 | 683 | - | - | |
Cmo14g01516 | 807 | ProSiteProfiles | Aminoacyl-transfer RNA synthetases class-II family profile. | 69 | 291 | IPR006195 | - | |
Cmo14g01516 | 807 | SUPERFAMILY | Class II aaRS and biotin synthetases | 35 | 285 | IPR045864 | - | |
Cmo14g01516 | 807 | Pfam | tRNA synthetase class II core domain (G, H, P, S and T) | 130 | 279 | IPR002314 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g02278 | Cmo-Chr4:16970332 | Cmo14g01516 | Cmo-Chr14:12147465 | 0 | transposed | |
Cmo18g01292 | Cmo-Chr18:12451328 | Cmo14g01516 | Cmo-Chr14:12147465 | 9.20E-118 | transposed | |
Cmo14g01516 | Cmo-Chr14:12147465 | Cmo06g01644 | Cmo-Chr6:11440290 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo14g01516 | K01881 | - | csv:101211125 | 857.44 |