Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01517 ATGGATTTCCTCCGTTTTTTGGCCCTTTCCCTGTTGGGATCCATCGCCATTCTTCTTCACAGCTGCATTGCTCTTGATGCCGTTTCCCCTCAACTCAACGACGATATTCTCGGCTTGATTGTCTTCAAATCTGCCCTCCACGACCCCTCTTCCCTTCTCGCTTCCTGGAATGAAGACGATGATTCTCCTTGTTCTTGGGAGTTCGTTAAATGCAACCCCATCAATGGCAGAGTTTCCGAGCTTTCCATTGATGGATTCGGGCTATCAGGGAGAATTGGACGAGGGTTTGAGAAATTGCAGTATCTCAAGGTACTCTCGCTTTCTGGCAATAATTTCACTGGCAATCTTAGTCCTGAGCTTGTTCTTCCTCCCAGTCTTCAGAGAGTTAATTTCAGTCGTAATCGTTTATCTGGACGGATACCTACTTCTTTAATCGCTATGTCCTCCATTAGATTTCTTGATTTTTCTGATAATCTGTTCTCTGGGCCGATTCCTGATGAAATGTTTGCTAACTGTTCTTCGCTTCATTATCTTTCTCTTGCGTCTAATATGCTTCAAGGCCCTGTCCCCAACACATTGCACACAAGGTGTTTGTATTTAAACACTCTGAATCTTTCGGCCAATCAGTTCTCTGGTAGCTTGGATTTATGGTCTTTGACAAGGCTCAGGACATTGGATCTTTCCAAAAATGCTTTCTCTGGGTATTTACCGCAAGGGATTTCAGCCCTCCATAACTTGAAAGAGCTCAGGTTACAGAGCAATCAGTTCTCAGGGCCATTGCCTGCAGACTTGGGATTATGTCTCCACTTGTCTACATTGGATGTCAGCAGGAACCGCCTCACCGGGCCGTTACCAGAGTCGATGAGGCTCTTAACCTCCTTGACCTTCTTGAACATCGGGTTCAACACGTTTTCAGGGGAGCTCCCGCAGTGGATTGGGAACATGACAAGCTTGAACTACGTGGAATTTTCAAGCAATGGCTTCACTGGCAGCCTTCCCTTGGCAATGGGAGGATTGAGATCTGTCAAATACATGAGTTTTTCGAACAACAAGCTATCTGGGAACATCCCGGAGACCTTAATGAAGTGTTCTGAGCTATCTGTGATCAAGCTAGAAGGAAACAGCTTGAATGGAAGGGTGCCAGAGGGGCTGTTTGAACTGGGTTTGGAGGAGATCGATTTGTCTCAGAACGAGCTGATTGGTTCAGTACCAGTAGGATCAAGCATGCTGTATGAGAAGCTCACCAGGATGGACTTGTCAAGGAACAGATTAGAAGGCAACTTCCCAGCAGAAATGGGATTGTACAAAAATTTGAAGTACTTGAATCTCTCGTGGAACAACTTTAAAGCAAAGATTCCACCGGAAATGGGTTTGTTTCAGAACTTGAATGTGTTGGACCTCAGAAGCAGTGATCTGCATGGCTCAATCCCCGGAGAACTGTGTGATTCTGGCAGTTTGGGGATTCTTCAGCTCGATGGCAACTCTTTGATTGGTCCAATTCCCGACGAGATTGGAAATTGTGTCTCACTATACTTGCTGAGTTTATCCCACAACAATCTGAGAGGAGAAATCCCGAAGTCAATCTCGAAGCTAAGCAAGCTAGAGATTCTAAGGCTTGAATCAAATGAATTGAGTGGAGAAATACCCCAAGAGCTTGGAATTCTTCAAAACCTGCTTGCCGTTAACATTTCATACAATATGCTGACAGGCAGGCTTCCTGTTGGTGGCATCTTTCCAAGCTTGGATCAAAGTGCACTGCAAGGGAACTTGGGCCTTTGCTCCCCTTTGCTTAAAGGACCTTGCAAAATGAATGTCCCTAAGCCCCTTGTTCTTGACCCCAATGCCTATCCCAGCCAAATGGGTGGCCAAACCAGCAGGGACAAGCCCTCACAATACTCTAATTCTTCTCCCCATCATGTGTTCTTCAGTGTCTCTGCCATTGTTGCCATTTCTGCTGCCACTTTCATTGCCCTTGGGGTGCTTGTGGTTACCTTGCTCAATGTCTCTTCTCGGAGGAGATCGCTTGCGTTTGTCGACAATGCATTGGAAAGCATGTGCTCGAGCTCTTCGAAGTCAGGGACTGCGACTGCTGGTAAGCTTGTTTTGTTTGATTCGAACTCAAGGGGTTCACCGAACTGGGTTACTAACCATGAAGCCTTGCTGAACAAGGCCTCTGAGATTGGTGCTGGAGTTTTTGGAACGGTTTATAAGGTTTCGTTGGGAGATCAAGGTGGAAGAGACGTAGCTATCAAGAAGCTTGTGAAGTCGAACATGATTCAGAATGTGGAAGATTTCGACCGGGAAATCCAAATCTTGGGCAAGGTCAAGCACCCCAATTTGATCAGCTTAAAGGGTTACTACTGGACTGCACAAACTCAGCTCTTGGTAATGGAGTATGCTACCAATGGAAGTCTTCAAACTCAACTCCATGGAAGGCTTCCTTCATCTCCACCTCTCACTTGGGATAACCGGTTCAAGATTGTGCTTGGGACAGCCAAAGGACTAGCACATTTACACCACTCATTCCGCCCGCCAATCGTTCACTACGACCTCAAGCCAACCAACATCCTTCTCGACGGAAACTTCAACCCGAAGATCTCCGATTACGGGCTTGCAAGACTGCTAACAAAGCTTGACAAGCACGTTGTAAACAACAGATTCCAAAGTGCATTGGGGTACATCGCACCAGAACTAGCATGCCAGAGCATAAGGGTGAACGAGAAATGTGACGTACACGGGTTCGGGGTGATGGTACTCGAGATCGTAACAGGACGAAGGCCGGTCGAGTACGGAGAAGACAATGTGGTAATATTGACAGACCATGTGAGGTATTTGCTAGAGAGAGGGAATGTGTTGGATTGTGTTGATCCAAGCATGAGTGAGTATTCAGAAGATGAAGTGGTGCCCATACTCAAGCTGGCTTTGGTCTGCATTTCTCAAATTCCTTCAAGCAGGCCATCCATGGCTGAAGTGGTGCAGATTCTGCAAGTCATCAAGACTCCAATCCCACAAACAATACCACAAGGATTTTGA 3033 46.39 MDFLRFLALSLLGSIAILLHSCIALDAVSPQLNDDILGLIVFKSALHDPSSLLASWNEDDDSPCSWEFVKCNPINGRVSELSIDGFGLSGRIGRGFEKLQYLKVLSLSGNNFTGNLSPELVLPPSLQRVNFSRNRLSGRIPTSLIAMSSIRFLDFSDNLFSGPIPDEMFANCSSLHYLSLASNMLQGPVPNTLHTRCLYLNTLNLSANQFSGSLDLWSLTRLRTLDLSKNAFSGYLPQGISALHNLKELRLQSNQFSGPLPADLGLCLHLSTLDVSRNRLTGPLPESMRLLTSLTFLNIGFNTFSGELPQWIGNMTSLNYVEFSSNGFTGSLPLAMGGLRSVKYMSFSNNKLSGNIPETLMKCSELSVIKLEGNSLNGRVPEGLFELGLEEIDLSQNELIGSVPVGSSMLYEKLTRMDLSRNRLEGNFPAEMGLYKNLKYLNLSWNNFKAKIPPEMGLFQNLNVLDLRSSDLHGSIPGELCDSGSLGILQLDGNSLIGPIPDEIGNCVSLYLLSLSHNNLRGEIPKSISKLSKLEILRLESNELSGEIPQELGILQNLLAVNISYNMLTGRLPVGGIFPSLDQSALQGNLGLCSPLLKGPCKMNVPKPLVLDPNAYPSQMGGQTSRDKPSQYSNSSPHHVFFSVSAIVAISAATFIALGVLVVTLLNVSSRRRSLAFVDNALESMCSSSSKSGTATAGKLVLFDSNSRGSPNWVTNHEALLNKASEIGAGVFGTVYKVSLGDQGGRDVAIKKLVKSNMIQNVEDFDREIQILGKVKHPNLISLKGYYWTAQTQLLVMEYATNGSLQTQLHGRLPSSPPLTWDNRFKIVLGTAKGLAHLHHSFRPPIVHYDLKPTNILLDGNFNPKISDYGLARLLTKLDKHVVNNRFQSALGYIAPELACQSIRVNEKCDVHGFGVMVLEIVTGRRPVEYGEDNVVILTDHVRYLLERGNVLDCVDPSMSEYSEDEVVPILKLALVCISQIPSSRPSMAEVVQILQVIKTPIPQTIPQGF 1010
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12161482 12165274 - CmoCh14G015170.1 Cmo14g01517 396783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01517 1010 Gene3D Ribonuclease Inhibitor 388 599 IPR032675 -
Cmo14g01517 1010 Pfam Protein kinase domain 723 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g01517 1010 SMART serkin_6 721 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g01517 1010 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 1005 - -
Cmo14g01517 1010 Gene3D Phosphorylase Kinase; domain 1 710 799 - -
Cmo14g01517 1010 Gene3D Ribonuclease Inhibitor 287 387 IPR032675 -
Cmo14g01517 1010 Gene3D Ribonuclease Inhibitor 37 196 IPR032675 -
Cmo14g01517 1010 SUPERFAMILY L domain-like 51 400 - -
Cmo14g01517 1010 SUPERFAMILY L domain-like 308 583 - -
Cmo14g01517 1010 Gene3D Transferase(Phosphotransferase) domain 1 801 1004 - -
Cmo14g01517 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 846 858 IPR008271 GO:0004672|GO:0006468
Cmo14g01517 1010 PANTHER BNAA09G02190D PROTEIN 7 1005 - -
Cmo14g01517 1010 ProSitePatterns Protein kinases ATP-binding region signature. 727 752 IPR017441 GO:0005524
Cmo14g01517 1010 Pfam Leucine Rich Repeat 437 454 IPR001611 GO:0005515
Cmo14g01517 1010 CDD STKc_IRAK 727 996 - -
Cmo14g01517 1010 ProSiteProfiles Protein kinase domain profile. 721 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g01517 1010 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Cmo14g01517 1010 Gene3D Ribonuclease Inhibitor 197 286 IPR032675 -
Cmo14g01517 1010 SUPERFAMILY Protein kinase-like (PK-like) 724 999 IPR011009 -
Cmo14g01517 1010 SMART LRR_typ_2 219 242 IPR003591 -
Cmo14g01517 1010 SMART LRR_typ_2 435 459 IPR003591 -
Cmo14g01517 1010 SMART LRR_typ_2 243 267 IPR003591 -
Cmo14g01517 1010 SMART LRR_typ_2 291 315 IPR003591 -
Cmo14g01517 1010 SMART LRR_typ_2 147 171 IPR003591 -
Cmo14g01517 1010 SMART LRR_typ_2 531 555 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01517 Cmo-Chr14:12161482 Cmo02g01759 Cmo-Chr2:10066921 8.04E-138 dispersed
Cmo17g00470 Cmo-Chr17:3346368 Cmo14g01517 Cmo-Chr14:12161482 6.68E-25 dispersed
Cmo14g01517 Cmo-Chr14:12161482 Cmo15g00181 Cmo-Chr15:831929 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74864 PF00069 Pkinase 3.30E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01517 - - csv:101217545 1747.25