Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01533 ATGAAGAAGGTCTTTGATCAAACTGTTAGAGACATAAAGAGAGAGGTCAATAAGACCGTGCTCAAAATTCCGAAAATAGAGCAGAAGGTTTTGGATGCCACTAGCAATGAGCCTTGGGGGCCTCATGGATCCCTTCTTGCAGATATAGCAGAGGCAACTAGAAATCATCATGAATATCAATTGATCATGGGAATAATCTGGAAGCGGATTAATGATACGGGCAAGAATTGGAGGCATGTCTACAAGGGGTTGACTGTTTTGGAGTACTTGGTGGGTCATGGGTCAGAGCGAGTCATAGACGACATCAGAGAACATGCATATCAGATATCGACCTTATCGGAATTTCACTACATCGATTCGAGTGCGAGGGATCAGGGTAACAATGTTAGAAAGAAATCTCTAAATCTTGTTGCCCTTGTAAATGATAAAGAAAGGATCGTTGAGGTCAGACAGAAAGCTGCTGCTAATAGGGACAAGTTTCGCAGCCCGTCATCTATGAGCCGTATGTATAGATCAAGAACAGGAGGATATGATGAGCGCTATGAAGGACGATATGGAAGCTATGATGGAGACAAAAATGTTGATTCTTTTGGGAGGGAAAGGGACTATGGTTTCAGAGATGATCGTTCTGGCAGAAATGAGGATTCATATAGTCGTGGTTATGAAGGACGCTATAACAGAGATGGTTATAAGGATGATGATTATCGTGGAAGAAGTCGAAGCATTGATGGTCATCAGTATGGTTCAAGGAGCAGGAGCTTTGACAGAGATGGAGAACGTACATATGATGAAGATGGTCACGTTTCTTCTCGCAACAATCGTGCCAGAGCACACGAGCCATCTCCGGTTGGAAGGAAGCTTGAACGCAAATTTTCGGAACAGAATCTTAGTTTCCCGCCTAGTTATGAAGAAGCTATGAATGAATCTGGAAGTTCTGTGCATAGTCAAAGAGATGTAGAAGCTCCATCAACTACAGCTCCAAGAGCTTTTCCTCCACCAACGTCCAGTACTCCGAGCCAGCCAACTAGTCATGGAACCTCTACATCCCCACCTACCCAGGGATTTGATCGTCCTGATCAATTTGACCCCCGGGGTTCCGTTCGAGCTGCTCCGACGGCCTCGAGCAGTTCGGAGACGAATTTATTCGACTCCTTGGCCTTAGTGCCTGTTGAGCCAGTAACATCAACTGCAGACTCCAAGAGTTGTGTTCGGAAAAGCTCTGCGGAGGGTTCCTATACTCAAAATCAGACTTTTAAAGACCCATTTGGTGACTCGTCTTTTAAAGCCGTTCCTTCCTCTGGTGTCCAAGATCAAGCAGATTTTCCTCATGGGGAATCGGTTTCTGCAGCATCTTACTCTACACCGGACATCCCTGTTCAACCTCAACCGAACTCGCACCATCCTCGTGAAGAGTCGCTGCTACATCAAGATATTGGTGTACTGGCTGATCTCCTTCCTCCTCCTGAAAGTTTACCAACTGTTGTTTCACAGCCCACATTTACAATATCAAACCAACCAGCACAACCAAATTTTTCAGCTGTATCTGGCTTGCCTGCACAGCCAAATTCTAACTTGGGGAACTATCAGCAATATGGAAGTATTGCTCCTATGAATTTTCAAAATCAAACAGAACCAGGGAGAGAGTTTGGCAATGGGATGTTCATAACACAGGGAGGAACACCAGCTCATGTCAATTCATATATGGTTCCTCCTCATGCTGGACCTAATACACAGCCCAACAATTTTGGATCCTCTCAGGACGGTTCTGCAGTTCCCACGAGTTCTCACGTTGCACTTCAAGCTTCCAGTTCGGTAGCTCCAGTGGCTTCTTCATTTCCTGTTGTACAATCTAACCCAGAGGTTATGGGTAGTTTTAATCCTCAAGCAGGAAACTACACTGCCATGGCTTACCAGCAAATTCCTCCAGTTGGATCACTTTCAACTGCGTCTCAAGCTTCGAAGAATAAGTTTGAGACCAAGTCCACAGTATGGTCTGACACATTAAGCAGAGGACTTGTCAATTTAAACATATCTGGACCTAAAGCAAACCCATTGGTGGACATTGGTGTTGATTTTGAATCCCTCGGTAGGAGGGAAAAGAGGATGGAGAAGCCTAGTATAGCTCCAATGGTATCTACCATTAACATGGGTAAAGCTATGGGATCTGGTTCTGGGATAGGCCGAGCCAGTGCAGGTGTACTAAGGCCTCCTCCAAATGCGATGTCGGGTACAGGTATGGGCATGGGAATGAGAGGCTATGGAGGTATGAATCAACCCATGGGAGGCATGGGGATGAATATGGGTATGGGGCAACAAGGAATTCAAATGCAGCAACCTCGAGCGAACATGCCCGGTGTATACAACCCAGTATACAACCCAATGATGGGCGCTGGAGGTTATGCCCCGCAACAGCCACGCTATTATATGCTAGCTAAAAGGGCATTTCAAAGGCTCACTACAATCATAATCATAAAAACTATGTACATGCGTGAATATGAAAGAGATTCATATGCTTTGCGCTTACTAGTCGCTTATTAA 2538 45.23 MKKVFDQTVRDIKREVNKTVLKIPKIEQKVLDATSNEPWGPHGSLLADIAEATRNHHEYQLIMGIIWKRINDTGKNWRHVYKGLTVLEYLVGHGSERVIDDIREHAYQISTLSEFHYIDSSARDQGNNVRKKSLNLVALVNDKERIVEVRQKAAANRDKFRSPSSMSRMYRSRTGGYDERYEGRYGSYDGDKNVDSFGRERDYGFRDDRSGRNEDSYSRGYEGRYNRDGYKDDDYRGRSRSIDGHQYGSRSRSFDRDGERTYDEDGHVSSRNNRARAHEPSPVGRKLERKFSEQNLSFPPSYEEAMNESGSSVHSQRDVEAPSTTAPRAFPPPTSSTPSQPTSHGTSTSPPTQGFDRPDQFDPRGSVRAAPTASSSSETNLFDSLALVPVEPVTSTADSKSCVRKSSAEGSYTQNQTFKDPFGDSSFKAVPSSGVQDQADFPHGESVSAASYSTPDIPVQPQPNSHHPREESLLHQDIGVLADLLPPPESLPTVVSQPTFTISNQPAQPNFSAVSGLPAQPNSNLGNYQQYGSIAPMNFQNQTEPGREFGNGMFITQGGTPAHVNSYMVPPHAGPNTQPNNFGSSQDGSAVPTSSHVALQASSSVAPVASSFPVVQSNPEVMGSFNPQAGNYTAMAYQQIPPVGSLSTASQASKNKFETKSTVWSDTLSRGLVNLNISGPKANPLVDIGVDFESLGRREKRMEKPSIAPMVSTINMGKAMGSGSGIGRASAGVLRPPPNAMSGTGMGMGMRGYGGMNQPMGGMGMNMGMGQQGIQMQQPRANMPGVYNPVYNPMMGAGGYAPQQPRYYMLAKRAFQRLTTIIIIKTMYMREYERDSYALRLLVAY 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12247970 12255032 - CmoCh14G015330.1 Cmo14g01533 396799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01533 845 MobiDBLite consensus disorder prediction 393 470 - -
Cmo14g01533 845 ProSiteProfiles ENTH domain profile. 18 150 IPR013809 -
Cmo14g01533 845 MobiDBLite consensus disorder prediction 394 422 - -
Cmo14g01533 845 CDD ENTH 26 142 - -
Cmo14g01533 845 MobiDBLite consensus disorder prediction 294 322 - -
Cmo14g01533 845 Pfam ENTH domain 25 146 IPR013809 -
Cmo14g01533 845 PANTHER EPSIN/ENT-RELATED 1 792 - -
Cmo14g01533 845 Gene3D - 23 162 IPR008942 -
Cmo14g01533 845 SUPERFAMILY ENTH/VHS domain 23 162 IPR008942 -
Cmo14g01533 845 SMART enth_2 24 150 IPR013809 -
Cmo14g01533 845 MobiDBLite consensus disorder prediction 339 355 - -
Cmo14g01533 845 MobiDBLite consensus disorder prediction 173 292 - -
Cmo14g01533 845 MobiDBLite consensus disorder prediction 152 379 - -
Cmo14g01533 845 MobiDBLite consensus disorder prediction 571 595 - -
Cmo14g01533 845 PANTHER CLATHRIN INTERACTOR EPSIN 2-RELATED 1 792 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01533 K12471 EPN; epsin - csv:101208671 1139.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00091 Cmo-Chr8:470540 Cmo14g01533 Cmo-Chr14:12247970 1.03E-36 dispersed
Cmo12g00561 Cmo-Chr12:3472935 Cmo14g01533 Cmo-Chr14:12247970 3.19E-72 dispersed
Cmo14g01533 Cmo-Chr14:12247970 Cmo17g00567 Cmo-Chr17:5827162 0 dispersed
Cmo14g01533 Cmo-Chr14:12247970 Cmo06g01632 Cmo-Chr6:11381172 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1118 . . . . . . . . . . . Cma14g01498 . Car14g01330 . . Cpe03g01258 Bhi01g02630 . . . Hepe05g1275 . . . . . . . . . . . . . . . . Cme07g01854 . . . . . . . . . . Cmo14g01533 . . . . . . . . . . . . . Cla07g01582 Cam07g1679 Cec07g1774 Cco07g1737 Clacu07g1663 Cmu07g1629 Cre07g2003 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003028 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 12 1 2 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01533 Cmo_Chr14 FPKM 0.0 0.0 6.237654 9.424386 2.337919 2.015304 3.035205 0.0 0.0 0.0