Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01543 ATGGGTTCTGAAGCAAACTCCGGCGACAGCCACATCCTTATGCTCCCTTTCATGGCTCACGGCCATCTCATCCCCTTCCTCGAACTCGCCAAATTAATCCTTCGTAGATCCTCTGTTTTCACCGTCATCATCGCCTGCACCCCTTCTAACATCCAGTACATCCGCTCCACTGTCTCCGCCGCCGTTAAAATCCAACTGGCGGAGCTCCACTACTCGAGCTCCGGCCACAACCTCCCAGCCAACACCGAGAACACCGAGAATCTCTCTCCAGAACAAATCGTCACTCTGTTAAACTCCTCCACCGCCCTCGAACTCCCCCTCCGGCGACTAATCACCGACATCATCAAAAAAGAAGGCAGGCCGCCGGTGTGTATAATCTCTGACTTGTTCTTTGGTTGGTCGGTTGCCGTCGCGAGAAGCTTTAACGTCCCGATTTTCAATTTCACTACCTGCGGTGCTTATGGTACTCTGGCCTACATCTCTCTCTGGTTGAATCTCCCCCACCGCTCCACCCCCGCGGATGATTTCTCTGTCCCAGGATTCCCAGAAGGCTGCCGTTTCCATCGCTCTCAACTGAACCAGTTCGTACTCGCCGCCGACGGCACCGATTCCTGGTCCAAATTTTTCCAGCCACAACTCTCCTCTGCTTTGTGCTCCGATGGATGGCTCTGTAACACCGTTGAAGAAGTTGAATCTTTCGGATTGAGGCACTTGAGGGATTACATAAAAATCCCCGTCTGGGCAATTGGACCGCTTCTTCCTGAAAGCACCAGCCGCCGGTGGGGGAAAGAGAAAGATTCCGGCGTACATTTGGAAAATTGCATCAATTGGCTGAATTCCCATTCAAAAAATTCGGTTCTGTACATCTCGTTCGGATCTCAGAACACAATCAGCGAGACCCAGATGCTAGAATTGGCGCACGGATTGGAGGAAAGTGGGAAGGCGTTCATATGGATGGTGAGGCCGCCATTGGGGCACGACATGAAAGCAGAGTTCAGAGCCGATGAATGGCTGCCGGAGCGATTCGAGGAACGAATGAAGGAGAGGAATGGAGGATTGTTGATCAGAAATTGGGCACCCCAGTTGGATATTTTGTCGCATGAAGCGGTGGGGGCGTTTTTGAGCCATTGTGGATGGAATTCGATGGTGGAGAGCCTGAGCCAGGGGGTGCCGATGATAGGGTGGCCAATGGCGGCAGAACAGGCGTACAACTCGAAGATGATGGTGGAGGAGATGGGGGTTGGAGTGGAGCTGACAAGGGGAAGAGAGAGAGAGATTCAGAGAGGGAAGGTGAAGAAGATGATAGAAATGGTGATGGGGGAAGGTGGGAAAGGGGAAGAGATGAGGAAGAAGGCCGCCATTGTTAAGGACAAGATGACGGCCGCGGTCAAGGATTATAACGAAAAGGGTTCGTCTGTGAGAAGTTTGGAGGAGTTTCTTGCAATCATTCCAACCATTACGAGCCAAGAAATGAAATTAAAAACGTAA 1488 51.75 MGSEANSGDSHILMLPFMAHGHLIPFLELAKLILRRSSVFTVIIACTPSNIQYIRSTVSAAVKIQLAELHYSSSGHNLPANTENTENLSPEQIVTLLNSSTALELPLRRLITDIIKKEGRPPVCIISDLFFGWSVAVARSFNVPIFNFTTCGAYGTLAYISLWLNLPHRSTPADDFSVPGFPEGCRFHRSQLNQFVLAADGTDSWSKFFQPQLSSALCSDGWLCNTVEEVESFGLRHLRDYIKIPVWAIGPLLPESTSRRWGKEKDSGVHLENCINWLNSHSKNSVLYISFGSQNTISETQMLELAHGLEESGKAFIWMVRPPLGHDMKAEFRADEWLPERFEERMKERNGGLLIRNWAPQLDILSHEAVGAFLSHCGWNSMVESLSQGVPMIGWPMAAEQAYNSKMMVEEMGVGVELTRGREREIQRGKVKKMIEMVMGEGGKGEEMRKKAAIVKDKMTAAVKDYNEKGSSVRSLEEFLAIIPTITSQEMKLKT 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12332990 12334477 + CmoCh14G015430.1 Cmo14g01543 396809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01543 495 PANTHER GLYCOSYLTRANSFERASE 9 482 - -
Cmo14g01543 495 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 275 419 IPR002213 GO:0008194
Cmo14g01543 495 PANTHER GLYCOSYLTRANSFERASE 9 482 - -
Cmo14g01543 495 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 9 480 - -
Cmo14g01543 495 Gene3D Glycogen Phosphorylase B; 275 464 - -
Cmo14g01543 495 Gene3D Glycogen Phosphorylase B; 2 274 - -
Cmo14g01543 495 CDD GT1_Gtf-like 11 459 IPR002213 GO:0008194
Cmo14g01543 495 ProSitePatterns UDP-glycosyltransferases signature. 358 401 IPR035595 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01543 - - - cpep:111790576 937.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01268 Cmo-Chr2:7572851 Cmo14g01543 Cmo-Chr14:12332990 9.61E-135 dispersed
Cmo14g01543 Cmo-Chr14:12332990 Cmo19g00612 Cmo-Chr19:6748036 6.70E-77 dispersed
Cmo14g01543 Cmo-Chr14:12332990 Cmo19g00610 Cmo-Chr19:6740218 3.61E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1102 . . Bda03g00986 . . . . . . . . Cma14g01510 Car06g01380 Car14g01333 . . . Bhi01g02615 . . . . . Lcy11g1245 . . . . . . . . . . . . . . . . Blo07g00109 . . . Bpe13g00726 . Bma06g01434 . . Cmo14g01543 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008183 1 1 4 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01543 Cmo_Chr14 FPKM 41.302776 41.967686 11.506788 13.573477 17.321344 12.284641 14.489418 0.198356 0.0 0.531325