Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01549 ATGGCTCCTTCTGGTGAAGATGAGCTTGAGTGGATTGAGAAAGTGAGATCAGGAGGGAACGTTCCCCTTTTTGGTGCAAATGGTAACTATTCAAATTGTTGGGATTCTCCTCATGGAGATAAGTTCCTGGTGCGAGGTCCCGAGTATTTCTCAACGAAGGCAAAAGTTCCTGCTGGCGAATCGATTCTAAAACCGCTCGGTTTCGACTGGATAAGAAGCTCTGCAAAGATCGGAGAGATCTTGAACCATCCAAACAACCGTATTCAGAAGGCGATTAACGATTCATTTCCTACAGGTCCTAGACCTTTCATCTGGGCATTTAATCTCCAACTTCCAAACAAACAGAACTACAATCTTGTTTCTTATTTCGTATCGACAGAGCCGATTGTCAAAGGCTCATTAATCGACCAGTTCCTGAAAGGCGACGACCACTTCAGAAACTCGAGGCTTAAACTGATTGCTGATATTGTCAAAGGCCCTTGGATTGTCAAAAGGGCTATTGGCAACCGAGCAGTCTGCGTGGTTGGGCGTGTTCTTGCATGTAAATACATCGTAAGGGACAACTTTTTCGAAGTCGACATCGACGTGGGATCGAATATCATGGCAAGGGCCATGTTTCATCTGGCGTTTGATTACTTCACAGCCTTGACAGCTGATATAGCCTTTTTCATTGAAGGGAAAACAAAATGTGAGCTTCCTGAAAGGCTTTTGGGGTGTTTTAGGTTCTCTGATCTGAACCCAGCTTCAGCCATGCCAATGGAGAGTGATGCTGGCTGA 777 45.17 MAPSGEDELEWIEKVRSGGNVPLFGANGNYSNCWDSPHGDKFLVRGPEYFSTKAKVPAGESILKPLGFDWIRSSAKIGEILNHPNNRIQKAINDSFPTGPRPFIWAFNLQLPNKQNYNLVSYFVSTEPIVKGSLIDQFLKGDDHFRNSRLKLIADIVKGPWIVKRAIGNRAVCVVGRVLACKYIVRDNFFEVDIDVGSNIMARAMFHLAFDYFTALTADIAFFIEGKTKCELPERLLGCFRFSDLNPASAMPMESDAG 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12384828 12385604 + CmoCh14G015490.1 Cmo14g01549 396815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01549 258 Pfam Protein ENHANCED DISEASE RESISTANCE 2, C-terminal 34 245 IPR009769 -
Cmo14g01549 258 PANTHER ENHANCED DISEASE RESISTANCE-LIKE PROTEIN (DUF1336) 4 255 - -
Cmo14g01549 258 PANTHER ENHANCED DISEASE RESISTANCE-RELATED 4 255 IPR045096 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01549 - - - cmax:111479461 516.153
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01614 Cmo14g01549 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00392 Cmo-Chr9:1727811 Cmo14g01549 Cmo-Chr14:12384828 3.99E-64 dispersed
Cmo12g00326 Cmo-Chr12:2034308 Cmo14g01549 Cmo-Chr14:12384828 4.29E-71 dispersed
Cmo14g01549 Cmo-Chr14:12384828 Cmo16g01254 Cmo-Chr16:8935237 1.67E-45 dispersed
Cmo14g01549 Cmo-Chr14:12384828 Cmo06g01614 Cmo-Chr6:11276959 4.08E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1243 . . . . . Bpe14g01057 . . . . Cma06g01619 Cma14g01515 Car06g01375 Car14g01339 . Cpe08g00107 Cpe03g01274 . . . . . . . . . . . . . . . . . . . . . . Blo02g00443 . . Bda13g00256 . . Bma02g00974 . . Cmo06g01614 Cmo14g01549 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006648 1 2 1 1 2 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01549 Cmo_Chr14 FPKM 1.965479 1.384541 3.887028 4.168266 8.313668 8.644348 7.407601 14.938171 14.921099 13.844571