Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01550 ATGGAGAAGAAAAGAGCAGTAAAGGAAGAGTCTTTCCTTCAGCACCCTGTCCTTTTTCTCCTTGTTCTGGGCTTGGGCTTTATACTAGTCGACCCATTTAAAATGGGCCCAGTTGGAGGCCACGATTTCAGGCCCGTCAAGCATGATATTGCACCTTACAGCCAGGTAATGGGCCATTGGCCCAAGGACAATCAGAGCCGTTTGGGCCTTGGAAATTTGGAATTCGAAGATCAGGTTTTTGGGCCTGAATCCTTGGAGTTTGATGCTTTGGGCCGTGGGCCTTACACTGGGCTTGCTGATGGCCGCATTGTTAGATGGATGGGTGAGGAAGTTGGATGGGAGACTTTTGCAATTGTCACAACAAAATGGTCAGAGAAGGAATGTGCACAAGGGGTTGATTCAACCACAGCCAAACAATGGAAGAATGAGAAGAAATGTGGAAGGCCACTTGGCCTAAGATTTGAGAAACAAACAGGGAATTTGTACATTGCTGATGCATATTATGGGCTTCTTATGGTTGGCCCTCAAGGGGGCATTGCCACTCCCTTGGCTACCCATGTTGATGGCACTCCCATTCTCTTTGCCAATGATCTTGATATCCATAACAATGGCTCCATCTTCTTCACCGACACGAGCAAGAGATATAATCGAGTTGATCATTTCTTCATCTTGTTGGAAGGAGAAGCTTCGGGTAGGCTTTTGAGATATGATCCTCCTACTAAAACAACTCATGTCGTGTTGAATGGCTTGGCCTTTCCGAATGGTGTGCAATTGTCTAAAGATCATAGCTTCCTTCTTTATACTGAAACTACTAATTGCAGATTAATGAAGGTGTGGCTAGGGGGATCAAGAAATGGAAAAGTAGAGGTAGTAGCAAATCTTCCAGGGTTTCCAGACAACGTAAGAAGAAACGAAAGAAACGAGTATTGGGTAGCCATAGATTGCTGTAGAACAAAAGCACAAGAGATACTGACACACAATCCATGGATAAGGAGTATCTATTTCAGGCTGCCATTGAGAATGAGCTTGCTGGCCAGGCTTATGGGCATGAAAATGTACACTGTCATCTCTCTTTTTAGTGAACATGGAGAGCTTTTAGATGTTCTTGAGGATCAAAAGGGTGAAGTTATGAAGCTGATGAGTGAAGTTAGAGAAGTTCATGGGAAGCTTTGGATTGGAACTGTGGCTCATAACCATATTGCTACCTTGACTTACCCTTTACAAATTAACAACCACCACAATGCTTAA 1248 43.99 MEKKRAVKEESFLQHPVLFLLVLGLGFILVDPFKMGPVGGHDFRPVKHDIAPYSQVMGHWPKDNQSRLGLGNLEFEDQVFGPESLEFDALGRGPYTGLADGRIVRWMGEEVGWETFAIVTTKWSEKECAQGVDSTTAKQWKNEKKCGRPLGLRFEKQTGNLYIADAYYGLLMVGPQGGIATPLATHVDGTPILFANDLDIHNNGSIFFTDTSKRYNRVDHFFILLEGEASGRLLRYDPPTKTTHVVLNGLAFPNGVQLSKDHSFLLYTETTNCRLMKVWLGGSRNGKVEVVANLPGFPDNVRRNERNEYWVAIDCCRTKAQEILTHNPWIRSIYFRLPLRMSLLARLMGMKMYTVISLFSEHGELLDVLEDQKGEVMKLMSEVREVHGKLWIGTVAHNHIATLTYPLQINNHHNA 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12386879 12388857 + CmoCh14G015500.1 Cmo14g01550 396816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01550 415 Pfam Strictosidine synthase-like, N-terminal 79 106 - -
Cmo14g01550 415 Pfam Strictosidine synthase 196 281 IPR018119 GO:0009058|GO:0016844
Cmo14g01550 415 SUPERFAMILY Calcium-dependent phosphotriesterase 72 403 - -
Cmo14g01550 415 PANTHER PROTEIN STRICTOSIDINE SYNTHASE-LIKE 13 5 406 - -
Cmo14g01550 415 Gene3D - 65 414 IPR011042 -
Cmo14g01550 415 PANTHER STRICTOSIDINE SYNTHASE-RELATED 5 406 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01550 - - - csv:101216745 769.615
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00520 Cmo-Chr14:2618461 Cmo14g01550 Cmo-Chr14:12386879 2.19E-92 dispersed
Cmo14g01550 Cmo-Chr14:12386879 Cmo15g00870 Cmo-Chr15:4423302 8.20E-75 dispersed
Cmo14g01550 Cmo-Chr14:12386879 Cmo06g00011 Cmo-Chr6:89672 4.53E-95 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1250 . . . . . Bpe14g01059 . . . . . Cma14g01516 . Car14g01340 . . . . . . . . . . . . . . . . . . . Cone18ag0850 . . . . . Blo02g00445 . . . . . . . . . Cmo14g01550 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012010 0 1 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01550 Cmo_Chr14 FPKM 13.310679 14.762062 1.103286 1.917766 0.0 0.0 1.812535 7.733606 8.441882 9.215706