Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo14g01553 | ATGGACAACGAGAAGCCCCAATGCCGTGGGGGAGGATTTCTGCACGAATCAACTCGTTACTCGGCGTTTTCATCGGCTGAAAGTAGTTTCAATGGAAAATCTGAGGCAGCCTCGTCTTCATTGTCATTGCCTCCATTGGCTCCCAGTGGTAATTCCGATTGGGGTGGTCAATCTGGCCGTGGAATGTCCACCGATTCCAATCGGTTTAGCCATGATATTAGTCGAATGCCTGAAAATCCGCGGCGAAATGTTGGGCATAGACGTGCTCATTCAGAGATCCTGACCCTCCCAGATGATATCTGTTTCGATAGTGACCTTGGTATCATTGGCGGTGGTGATGGGCCTTCTCTTTCCGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCCTCCACTGGTACTTCTGCTACTAAAGTGGGTGATTCATCTTCCTCCGTTGTAGAAGCAGCGGCTACTTCTACAGATGATATTGCTGTTGGTTTGAAGGAGAGGCCGAGAGTTAGACATCAGCATAGCCAGTCCATGGACGGCTTGACAAACATCAAACCTGAGATGCTTGTCACGGGTTCTGAAGAAGCCTCTGCAGCTGACTCCAAGAAAGCCGTGTCAGCTGCTAAGCTTGCTGAGCTTGCGTTGATTGACCCCAAACGTGCAAAAAGGATATGGGCGAACAGACAGTCAGCTGCACGGTCAAAGGAACGAAAGATGCGGTACATTGCTGAGCTTGAAAGGAAAGTTCAAACATTGCAAACAGAGGCAACTTCCTTGTCTACTCAGTTGACTCTCTTACAGAGAGATGCAAATGGTATCACTGCCGAGAACAGTGAATTAAAGCTGCGATTGCAGACAATGGAACAGCAGGTTCACCTGCAAGATGCTTTAAATGAAGCACTGAAAGAAGAAATTCAGTATTTGAAAGTTTTGACTGGCCAAGCAATGCCGAACGGTAGATCAATCACAAACTTTGCTTCCTTTGGAGGCGGCCAACAATTCTATCCTTCAAACAATCAAGCAGTTCATACTTTGTTAACTGCGCAGCAGTTTCAGCAACTTCAAATACAATCCCAACAGCAACAGCATTTTCAGTACCAGCAGCTGCATCAGCTTCAGCAACAGCAGGCTGGAGACATCAGAATGAAACGATCCATATCTCCTCAAAGCTCAAAAGACGCTGCATCGGACACGAAGCCTCCTCCTACCTCTTGTTGA | 1230 | 46.75 | MDNEKPQCRGGGFLHESTRYSAFSSAESSFNGKSEAASSSLSLPPLAPSGNSDWGGQSGRGMSTDSNRFSHDISRMPENPRRNVGHRRAHSEILTLPDDICFDSDLGIIGGGDGPSLSDDTEEDLLSMYLDMDKFNSSTGTSATKVGDSSSSVVEAAATSTDDIAVGLKERPRVRHQHSQSMDGLTNIKPEMLVTGSEEASAADSKKAVSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSTQLTLLQRDANGITAENSELKLRLQTMEQQVHLQDALNEALKEEIQYLKVLTGQAMPNGRSITNFASFGGGQQFYPSNNQAVHTLLTAQQFQQLQIQSQQQQHFQYQQLHQLQQQQAGDIRMKRSISPQSSKDAASDTKPPPTSC | 409 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 12395349 | 12399440 | + | CmoCh14G015530.1 | Cmo14g01553 | 396819 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo14g01553 | 409 | MobiDBLite | consensus disorder prediction | 24 | 87 | - | - | |
Cmo14g01553 | 409 | SUPERFAMILY | Leucine zipper domain | 223 | 273 | IPR046347 | GO:0003700|GO:0006355 | |
Cmo14g01553 | 409 | Pfam | bZIP transcription factor | 223 | 271 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo14g01553 | 409 | Gene3D | - | 222 | 274 | - | - | |
Cmo14g01553 | 409 | MobiDBLite | consensus disorder prediction | 71 | 87 | - | - | |
Cmo14g01553 | 409 | MobiDBLite | consensus disorder prediction | 24 | 70 | - | - | |
Cmo14g01553 | 409 | CDD | bZIP_plant_RF2 | 224 | 273 | IPR044759 | GO:0003700|GO:0006355 | |
Cmo14g01553 | 409 | MobiDBLite | consensus disorder prediction | 381 | 409 | - | - | |
Cmo14g01553 | 409 | SMART | brlzneu | 219 | 283 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo14g01553 | 409 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 7 | 403 | - | - | |
Cmo14g01553 | 409 | Coils | Coil | 239 | 308 | - | - | |
Cmo14g01553 | 409 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 221 | 284 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo14g01553 | 409 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 7 | 403 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo14g01553 | Cmo-Chr14:12395349 | Cmo20g00333 | Cmo-Chr20:1631748 | 8.50E-55 | dispersed | |
Cmo14g01553 | Cmo-Chr14:12395349 | Cmo06g01610 | Cmo-Chr6:11262263 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11035 | PF00170 | bZIP_1 | 1.10E-08 | CL0018 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo14g01553 | - | - | csv:101212010 | 610.912 |