Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01553 ATGGACAACGAGAAGCCCCAATGCCGTGGGGGAGGATTTCTGCACGAATCAACTCGTTACTCGGCGTTTTCATCGGCTGAAAGTAGTTTCAATGGAAAATCTGAGGCAGCCTCGTCTTCATTGTCATTGCCTCCATTGGCTCCCAGTGGTAATTCCGATTGGGGTGGTCAATCTGGCCGTGGAATGTCCACCGATTCCAATCGGTTTAGCCATGATATTAGTCGAATGCCTGAAAATCCGCGGCGAAATGTTGGGCATAGACGTGCTCATTCAGAGATCCTGACCCTCCCAGATGATATCTGTTTCGATAGTGACCTTGGTATCATTGGCGGTGGTGATGGGCCTTCTCTTTCCGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCCTCCACTGGTACTTCTGCTACTAAAGTGGGTGATTCATCTTCCTCCGTTGTAGAAGCAGCGGCTACTTCTACAGATGATATTGCTGTTGGTTTGAAGGAGAGGCCGAGAGTTAGACATCAGCATAGCCAGTCCATGGACGGCTTGACAAACATCAAACCTGAGATGCTTGTCACGGGTTCTGAAGAAGCCTCTGCAGCTGACTCCAAGAAAGCCGTGTCAGCTGCTAAGCTTGCTGAGCTTGCGTTGATTGACCCCAAACGTGCAAAAAGGATATGGGCGAACAGACAGTCAGCTGCACGGTCAAAGGAACGAAAGATGCGGTACATTGCTGAGCTTGAAAGGAAAGTTCAAACATTGCAAACAGAGGCAACTTCCTTGTCTACTCAGTTGACTCTCTTACAGAGAGATGCAAATGGTATCACTGCCGAGAACAGTGAATTAAAGCTGCGATTGCAGACAATGGAACAGCAGGTTCACCTGCAAGATGCTTTAAATGAAGCACTGAAAGAAGAAATTCAGTATTTGAAAGTTTTGACTGGCCAAGCAATGCCGAACGGTAGATCAATCACAAACTTTGCTTCCTTTGGAGGCGGCCAACAATTCTATCCTTCAAACAATCAAGCAGTTCATACTTTGTTAACTGCGCAGCAGTTTCAGCAACTTCAAATACAATCCCAACAGCAACAGCATTTTCAGTACCAGCAGCTGCATCAGCTTCAGCAACAGCAGGCTGGAGACATCAGAATGAAACGATCCATATCTCCTCAAAGCTCAAAAGACGCTGCATCGGACACGAAGCCTCCTCCTACCTCTTGTTGA 1230 46.75 MDNEKPQCRGGGFLHESTRYSAFSSAESSFNGKSEAASSSLSLPPLAPSGNSDWGGQSGRGMSTDSNRFSHDISRMPENPRRNVGHRRAHSEILTLPDDICFDSDLGIIGGGDGPSLSDDTEEDLLSMYLDMDKFNSSTGTSATKVGDSSSSVVEAAATSTDDIAVGLKERPRVRHQHSQSMDGLTNIKPEMLVTGSEEASAADSKKAVSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSTQLTLLQRDANGITAENSELKLRLQTMEQQVHLQDALNEALKEEIQYLKVLTGQAMPNGRSITNFASFGGGQQFYPSNNQAVHTLLTAQQFQQLQIQSQQQQHFQYQQLHQLQQQQAGDIRMKRSISPQSSKDAASDTKPPPTSC 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12395349 12399440 + CmoCh14G015530.1 Cmo14g01553 396819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01553 409 MobiDBLite consensus disorder prediction 24 87 - -
Cmo14g01553 409 SUPERFAMILY Leucine zipper domain 223 273 IPR046347 GO:0003700|GO:0006355
Cmo14g01553 409 Pfam bZIP transcription factor 223 271 IPR004827 GO:0003700|GO:0006355
Cmo14g01553 409 Gene3D - 222 274 - -
Cmo14g01553 409 MobiDBLite consensus disorder prediction 71 87 - -
Cmo14g01553 409 MobiDBLite consensus disorder prediction 24 70 - -
Cmo14g01553 409 CDD bZIP_plant_RF2 224 273 IPR044759 GO:0003700|GO:0006355
Cmo14g01553 409 MobiDBLite consensus disorder prediction 381 409 - -
Cmo14g01553 409 SMART brlzneu 219 283 IPR004827 GO:0003700|GO:0006355
Cmo14g01553 409 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 403 - -
Cmo14g01553 409 Coils Coil 239 308 - -
Cmo14g01553 409 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 221 284 IPR004827 GO:0003700|GO:0006355
Cmo14g01553 409 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 403 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01553 Cmo-Chr14:12395349 Cmo20g00333 Cmo-Chr20:1631748 8.50E-55 dispersed
Cmo14g01553 Cmo-Chr14:12395349 Cmo06g01610 Cmo-Chr6:11262263 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11035 PF00170 bZIP_1 1.10E-08 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01553 - - csv:101212010 610.912