Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01558 ATGGTCGCTTCCTCGGTTCTTATGGTGGCTGAGAAGCCTAGCATTGCGCTCTCGATTGCTTCTGCACTCTCGCACGGCCAAATGTCTACAAGAAAGGGTAGCACAGAGGTACATGAATTCGATGGGAGATTTCTTGGGCATCATGCCCATTACAAAGTGACATCGGTTATCGGACATGTTTTCAGTATAGATTTCCCTGCTAGATTTCAAGATTGGAAGGCAACTGATCCTTTGGATCTTTTTCAAGCTTCAGTAATTAAGACAGAATCAAACCCAAAGGCTCACATACGTCAACATTTAAGTCGGGAAGCTCGTGGTTGTGATTGTTTGGTTTTATGGTTGGATTGTGATCGTGAAGGAGAAAATATTTGTTTTGAAGTTATTGAATGCACTGGATTTGGTGGCAATGAATATAGGAAAAAAGTGTATCGGGCAAGGTTTTCTTCCGTTACTGAAAAAGATATTCTGAAGGCTTTGGATAACCTTGTTGAACCTAATAGAAATGAGGCACTGGCTGTAGATGCTCGACAAGAGATAGATTTGAAAGTTGGAGTATCTTTTACACGATTTCAGACTACATTTTTTCAGGGAAAATATGGGAACCTTGATTCCAGACTCATCTCCTATGGGCCATGCCAAACTCCCACGCTTGGGTTTTGTGTACAGCGTCATTTGCAAATAACTACTTTTAAGCCAGAAAAATTTTGGTCTGTGTGCCCTTATATCATGCAAAATGGCTATGAACTTAATCTAGACTGGGAGCGTGGCAGGCTATTTGACTGTGATGTTGCTACAATGTTTCAAAAGCGAGTAATGGAAGATGGAATTGCAGAAGTAACACAAATATCAGAGAAGCAAGAAAGCAAAGTTCGACCTTCTGGACTAAATACAGTTAACCTTCTGAAGGTTGCTTCAAGCGCACTAGGATACGGACCTCAAATGGCAATGCAACTAGCTGAACGATTGTATACCCAAGGGTTCATCAGCTATCCACGTACAGAAAGTACGGCTTATCCTTCTTCATTTGACTTCAAAGGCACTCTACATTCCCTAGTGAAAAATCCAGAATGGGGTGATTATGTAAGGGTGCTTCTATCCGATGGATACAGTAAGCCACGATCAGGAACTGATGTAGGTGATCATCCTCCTATTACTCCAATGTCTTTAGCAACTGAAGACATGGTGGGGAGAGATGCTTGGAGATTGTACCAATACGTGTGTCAACACTTCATTGGGTCTCTATCATCTGACTGCAAGTATCTTAGGACGAAGATACAGTTTTCAATCGCTGGGGAAATATTCAATTGTACTGGGTCCAGTGTTATGGTAAAAGGATTCACCTCCATTATGCCATGGTTGGCAGTAAATGAAAAAAAATTACCTCAGTTTCTGAAGGGACAGAAAATAGAAGTTGCAAAAGTGGATCTTTATCAGGGGAACACCTCGCCTCCTGATTATTTAAGTGAGAGTGAGTTAATTTCTCTCATGGAGAAGCATGGAATAGGCACGGATGCATCAATACCTGTACACATTAACAACATAGGCGAGCGCAACTATGTGCAGGTTCAAGCTGGGAGGAGGTTGGTTCCAACTAACTTGGGCATCACCTTAATCAGAGGTTATCAGTGTATTGATCCAGATCTCTGCTTACCAGATATTAGAAGTTTCATCGAGCAACAGATCACTTTTGTTGCCAAAGGTCAAGCAGATCATTTTAGTGTTGTGCAGAATGTACTGCAACAGTTCAAGCAAAAGTATAGCTACTTCGTTAAGAAGATCGATCATATGGATGCTCTGTTTGAAGCACAATTTTCTCCTCTTGCGGAGTCGGGACGTGCTTTGAGCAAATGTGGCAAATGCCTACGTTATATGAAGTTTATTTCTTCCCAACCACAGCGCCTGTACTGTGGTACATGTGAGGAGGTTTATTATCTTCCTCAAAGGGGAGCAATAAAGCTGTACAAGGAACTTACATGCCCTTTGGATAACTTTGAGCTCTTGATTTTTTCCTTACCTGGTCCAGAAGGCAAGTCATTTCCTCTTTGCCCATACTGCTACAATAGTCCTCCATTCGAGGGTATCGACACATTATATGGTGCTGCTAAAACCAACCCGAGTTCTGGAGCATCGAGCAAGGGAATGGGCATGCCATGCTTCCTATGCCCGCACCCAACATGTCGACATTCTTTAATAACCCAAGGAGTTTGCGCTTGCCCGGAATGTAGCGGGACGCTTGTCCTAGATCCAGTGGGTGCACCCAACTGGAAACTCAACTGCAACAAATGCAATTGTCTTGTCTTCCTTCCTCAGGGTGCTCATAGGATTGCCACCACAAACGAGAAGTGTGCTGAATGTGACTCTACAATTATAGAAGTGGACTTCAACAAGAAAACTACTCCATTGGAGGGTGGAGCTACATTGTTTGTTGGGTGCATTCTTTGCGATGAATTTCTCCACTCCCTTCTGGAGATGAAGCATGGAAAATCATTTTTCAGAGGGAGAGGTAGAGAACACCAAGATGAACCACCTAAACCTTTTCTTATACATTATTTACCTTTTAACTCGTATGGTGCCTGTTTCATAGGTTGTGAAGCTGCTGCTGTACATCCTTCTTTTCCTCCTGTTTCCTTTTATGGTCAGGATTTTGAACACATTAATGTGGAATAA 2667 42.41 MVASSVLMVAEKPSIALSIASALSHGQMSTRKGSTEVHEFDGRFLGHHAHYKVTSVIGHVFSIDFPARFQDWKATDPLDLFQASVIKTESNPKAHIRQHLSREARGCDCLVLWLDCDREGENICFEVIECTGFGGNEYRKKVYRARFSSVTEKDILKALDNLVEPNRNEALAVDARQEIDLKVGVSFTRFQTTFFQGKYGNLDSRLISYGPCQTPTLGFCVQRHLQITTFKPEKFWSVCPYIMQNGYELNLDWERGRLFDCDVATMFQKRVMEDGIAEVTQISEKQESKVRPSGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFKGTLHSLVKNPEWGDYVRVLLSDGYSKPRSGTDVGDHPPITPMSLATEDMVGRDAWRLYQYVCQHFIGSLSSDCKYLRTKIQFSIAGEIFNCTGSSVMVKGFTSIMPWLAVNEKKLPQFLKGQKIEVAKVDLYQGNTSPPDYLSESELISLMEKHGIGTDASIPVHINNIGERNYVQVQAGRRLVPTNLGITLIRGYQCIDPDLCLPDIRSFIEQQITFVAKGQADHFSVVQNVLQQFKQKYSYFVKKIDHMDALFEAQFSPLAESGRALSKCGKCLRYMKFISSQPQRLYCGTCEEVYYLPQRGAIKLYKELTCPLDNFELLIFSLPGPEGKSFPLCPYCYNSPPFEGIDTLYGAAKTNPSSGASSKGMGMPCFLCPHPTCRHSLITQGVCACPECSGTLVLDPVGAPNWKLNCNKCNCLVFLPQGAHRIATTNEKCAECDSTIIEVDFNKKTTPLEGGATLFVGCILCDEFLHSLLEMKHGKSFFRGRGREHQDEPPKPFLIHYLPFNSYGACFIGCEAAAVHPSFPPVSFYGQDFEHINVE 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12428174 12446762 - CmoCh14G015580.1 Cmo14g01558 396824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01558 888 Gene3D Topoisomerase I, domain 2 172 586 IPR013824 -
Cmo14g01558 888 PANTHER DNA TOPOISOMERASE 3-BETA-1 5 836 - -
Cmo14g01558 888 Gene3D Topoisomerase I, domain 3 231 484 IPR013825 -
Cmo14g01558 888 SMART topIaneu2 283 538 IPR003602 GO:0003677|GO:0003916|GO:0006265
Cmo14g01558 888 Pfam DNA topoisomerase 165 575 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cmo14g01558 888 Pfam Toprim domain 6 149 IPR006171 -
Cmo14g01558 888 ProSiteProfiles Toprim domain profile. 5 148 IPR006171 -
Cmo14g01558 888 SUPERFAMILY Prokaryotic type I DNA topoisomerase 6 590 IPR023405 -
Cmo14g01558 888 Gene3D Topoisomerase I, domain 4 291 416 IPR013826 -
Cmo14g01558 888 Gene3D - 1 165 - -
Cmo14g01558 888 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 320 334 IPR023406 GO:0003917
Cmo14g01558 888 CDD TOP1Ac 168 586 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cmo14g01558 888 CDD TOPRIM_TopoIA_TopoIII 6 162 IPR034144 -
Cmo14g01558 888 SMART topIban2 141 237 IPR003601 GO:0003677|GO:0003916|GO:0006265
Cmo14g01558 888 SMART toprim5 5 136 IPR006171 -
Cmo14g01558 888 PRINTS Prokaryotic DNA topoisomerase I signature 110 123 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cmo14g01558 888 PRINTS Prokaryotic DNA topoisomerase I signature 325 334 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cmo14g01558 888 PRINTS Prokaryotic DNA topoisomerase I signature 500 514 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cmo14g01558 888 PRINTS Prokaryotic DNA topoisomerase I signature 207 225 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cmo14g01558 888 PRINTS Prokaryotic DNA topoisomerase I signature 402 418 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cmo14g01558 888 PANTHER PROKARYOTIC DNA TOPOISOMERASE 5 836 IPR000380 GO:0003677|GO:0003917|GO:0006265
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01558 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] - csv:101216022 1608.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01558 Cmo-Chr14:12428174 Cmo09g00526 Cmo-Chr9:2460564 2.00E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1068 . . . . . . . . . . . Cma14g01522 . Car14g01348 . . Cpe03g01281 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma06g01402 . . Cmo14g01558 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007510 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 5 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01558 Cmo_Chr14 FPKM 1.478723 2.506143 1.653711 3.651131 3.401037 2.392961 3.418065 3.194702 1.307547 1.577412