Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01559 ATGGAGAACGAGTTTTTTATGAGCGATGGATGCGGTTTTTCTGGGATGGAAATTCAACCTAATGAGTTGAATTCGAGTGGGTTGTTTACTCCCAATTGGGAGAATTCGATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGTTCAATTGTGTCTTCTCCGGTGAATTCTCACGCTGGAAATGTTATCGGCGGTGGCGGTGGCGGTGGAGACAACTTGATGATGCGAGAATTGATCGGAAGGCTTGGGAGTATTTGCAATTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGAACGAACAATAACAGTACGAACACTTCTTGTTACAATACGCCTTTGAATTCTCCTCCCAAGCTCAATTTGTCTTCGATCGGAGGGAATTTGATTCCCCTTCATCAAAATCTGGCTCCATTTTCGGCTGATCCTGGGTTTACTGAGAGGGCTGCGAGATTTTCTTGCTTTGGGAATAGGAATCTTGCGGGCTTGAATGGCCACTTGAGTTCCAATGAAACCCTAGAATTGGGAGCTGGGATGGAATCTGGAAAGCTATCCAGAGTTTCAAGTAACAAATCCTTCAACATTGGTGGGATTGGATCCCAAATGGGGGTTCAAGAAGGCGAGCAAAGCCCAATCCAGAAGGGGAATTCCATGAGAATCCCTAACAAGAAGGTACTGAACAGGTTTTCGAAGTCTTCGACCCCTGAAAACACCGGCGATTCACCGGAGGGATCGTCGGTTTCCGAACAGATTACAGGTGGGGAATTGGGTTTCAAAGGTAAACCAGAAATCAACACTAGGAAAAGGAAATCAACACTAGCAAAAGATTTGAAGGTTGCAGGAGAGAAACATGAATCAAATGGAAAGAAAATCAAACCAGATGAAGCTTCTAAGAAGGAGATTGATGCTGCTAAAGGGAAGGCAGAGGCCAAAGATGGCTCAAAAGCTTTAGGAGTAGCAAATCCTAAGCAAAAGAATGACAATTCAAAGCCTCCAGAGCCTCCAAAGGATTATATCCATGTCAGAGCTGGAAGGGGTCAAGCAACAGATAGCCACAGTTTGGCTGAAAGAGCCCGACGAGAGAAAATCAGCAAACGGATGAAGTTTCTTCAAGATCTCGTCCCTAGTTGCAATAAGGTAACTGGGAAGGCTGTCATGCTTGATGAAATCATAAACTATGTTCAGTCTTTGCAGCGCCAAGTTGAGTTTCTTTCAATGAAATTGACCACTGTGAATCCAAGGATGGATTTGAACATGGAGACCCTTTTGCCAAAGGATATCTTCAAAGGTCCCGGTTCGTCGTCGCTAACGGTTTACCCTATGGATTCATCCATGCCCGCATTTGCATATGACTATCAATCTATGCACATGCCTCCTCTTCATAGTAGCATTTCTAATGGGACAGAGAAGCAATTCTCAGTTGCCTCATCAAGTGATCAGCATAGAAATCTAAGCGCGCAAATACCGAGTGGATACAATGAAGTCGGGAACGGAATCCAAATTTCAAAGTTCTGGGAGGATGAACTCCACACCGTAGTTCAAATGGGTTATGGACAAAACCAGCTGCAGAGTTCTAATGGCTCTATGGCTGCAGATGAGATGAAAAGTGAACGGTAA 1617 44.4 MENEFFMSDGCGFSGMEIQPNELNSSGLFTPNWENSMDQSDLFESTLSSIVSSPVNSHAGNVIGGGGGGGDNLMMRELIGRLGSICNSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPKLNLSSIGGNLIPLHQNLAPFSADPGFTERAARFSCFGNRNLAGLNGHLSSNETLELGAGMESGKLSRVSSNKSFNIGGIGSQMGVQEGEQSPIQKGNSMRIPNKKVLNRFSKSSTPENTGDSPEGSSVSEQITGGELGFKGKPEINTRKRKSTLAKDLKVAGEKHESNGKKIKPDEASKKEIDAAKGKAEAKDGSKALGVANPKQKNDNSKPPEPPKDYIHVRAGRGQATDSHSLAERARREKISKRMKFLQDLVPSCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLTTVNPRMDLNMETLLPKDIFKGPGSSSLTVYPMDSSMPAFAYDYQSMHMPPLHSSISNGTEKQFSVASSSDQHRNLSAQIPSGYNEVGNGIQISKFWEDELHTVVQMGYGQNQLQSSNGSMAADEMKSER 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12449597 12452510 + CmoCh14G015590.1 Cmo14g01559 396825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01559 538 SMART finulus 353 403 IPR011598 GO:0046983
Cmo14g01559 538 Gene3D - 344 418 IPR036638 GO:0046983
Cmo14g01559 538 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 416 IPR036638 GO:0046983
Cmo14g01559 538 CDD bHLH_AtBPE_like 337 422 - -
Cmo14g01559 538 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 397 IPR011598 GO:0046983
Cmo14g01559 538 PANTHER TRANSCRIPTION FACTOR BHLH78-LIKE ISOFORM X1 34 524 - -
Cmo14g01559 538 MobiDBLite consensus disorder prediction 226 252 - -
Cmo14g01559 538 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 34 524 IPR024097 GO:0006355
Cmo14g01559 538 Pfam Helix-loop-helix DNA-binding domain 351 398 IPR011598 GO:0046983
Cmo14g01559 538 MobiDBLite consensus disorder prediction 197 339 - -
Cmo14g01559 538 MobiDBLite consensus disorder prediction 197 217 - -
Cmo14g01559 538 MobiDBLite consensus disorder prediction 261 312 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00241 Cmo-Chr8:1463780 Cmo14g01559 Cmo-Chr14:12449597 7.65E-80 dispersed
Cmo12g00637 Cmo-Chr12:4055791 Cmo14g01559 Cmo-Chr14:12449597 1.42E-46 dispersed
Cmo14g01559 Cmo-Chr14:12449597 Cmo17g01261 Cmo-Chr17:9935909 4.41E-69 dispersed
Cmo18g00237 Cmo-Chr18:1559926 Cmo14g01559 Cmo-Chr14:12449597 1.74E-44 dispersed
Cmo18g01098 Cmo-Chr18:11457766 Cmo14g01559 Cmo-Chr14:12449597 5.36E-39 dispersed
Cmo14g01559 Cmo-Chr14:12449597 Cmo06g01603 Cmo-Chr6:11225025 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11036 PF00010 HLH 7.00E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01559 - - cmax:111479362 995.342