Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01561 ATGGAGGACGATTTTGAGTTTCCATCTGCAAGCAATGTGGACGAGGAAATGGACATGCCTGAGGATGAAGCGGAGAGCCCGGTTCTGAAGGTTGGCGAGGAGAAGGAGATTGGGAAGAACGGGCTGAAGAAGAAACTTGTTAAAGAAGGTGAAGGATGGGAAACTCCCGACACTGGTGATGAAGTCGAAGTGCATTATACCGGAACCCTTCTTGATGGGACTAAATTCGATTCCAGCCGTGACCGAGGAACGCCTTTCAAATTCAAGCTCGGGGAAGTCCGAAGATCGATCCCTATTTATTGGAATTTTGTTGCGCTCTTTCAATCCATGCTGTTCTTCCGTTTTGATTCTGATACAGTGGTCGTTTATCTTATATCACGTTGGCTGTTTCCATCAGGGCAAGTGATTAAAGGATGGGATGAAGGTATCAGAACTATGAGGAAGGGTGAAAATGCAGTATTCACGATACCCCCTGGATTGGCTTATGGAGAGTCCGGTTCTCCTCCAACTATTCCGCCGAATGCTACTCTTCAATTTGATGTTGAGCTGCTTTCATGGCACAGCGTCAAAGATATCTGTCAAGATGGAGGAATCCTCAAAAAGATCCTCGTCAAAGGAGATGGGTGGGATAAACCGAAGGATCTAGACGAAGTCCTGGTTCATTACGAGGCTCGTCGTGAAGATGGTACGCTAATCTCGAGGTCTGATGGGGTTGAATTCATCGTTGAAAATGGCCACTTCTGCCCTGCTTTGGCAACAACTGTGAAAACGATGAAGAAGGGAGAGAAAGCGTTGTTAACTGTGAGGCCTCAATATGGGTTTGGGGAGTCCGGTAGGCCTGCGGTGGGAGAAGAAGGTGTTGTGCCTCCTAATGCCACGCTTCTGATAACCCTTGAATTGGTTTCTTGGAAAACTGTTATAGACATTACTAAAGATAAGAAAGTCCTGAAGAAGACTTTGAAGGAGGGAGAAGGATATGAACAACCAAATGATGGAGCAGAGGTTCAAGTGAAACTCGTCGGTAAACTAGCTGATGGGACGATCTTTGCTAAGAAGGGCGATGACGAGAAGCCTTTTGAGTTCAAAACTGATGAAGAACAAGTCATTGAAGGACTCGATTTGGCTGTGAAAAAAATGAAGAAGGGAGAAATTGCCATGGTGACTATCCATCCACAATATGCTTTTGGGTCTTCCGATTCATCTCAAGATCTTGCTGTGGTTCCTGCAAACTCAACTGTTCATTACGAAGTTGAGCTTGTCTCATTTGTCAAAGAAAAAGAATCTTGGGATCTGAAAACAGCGGAAGAGAAAATAGAAGCAGCAGGGAGAAAGAAGGAAGAAGGAAACGTATTGTTCAAAGCTGGTAAATATGCCAGAGCATCAAGCAGATATGAAAAGGCTGTGCGTTACATTGAATATGATACCTCCTTCAACGATGAGGAGAAGCAACAGTGCAAGGCACTAAAGATTTTGTGCAATCTAAACAATGCTGCTTGCAAATTGAAAGTCAAGGACTACAGGCAAGCGGAGAAGCTCTGTTCAAAGGTGTTGGAACTTGACAGTAGAAATGTGAAAGCTCTGTATAGAAGGGCTCAAGCATATATTCAACTCGTTGATCTTGATCTTGCTGAGCAGGATCTCAAGAAAGCCCTTGAGATTGACCCTGAAAACAGCTTTTATACAATGAAAGTGAAGATCGATGCAAGCGCTCATGTGGGTGTCATTATAATACAAGTGAAGATCGAACTTCGACAGCTGAAAGAGAAAGTAAGGGAATACAACAAGAGAGACGCACAATTTTATGGCAACATCTTTGCAAAAATGAGCAAGTTGGAGTCGGGGAAGGCTGCCAGTTCAGCAGTGAAGCAGGAGGCAGTGCCAATGACCATTGATAGCAAAGCTTAG 1905 44.36 MEDDFEFPSASNVDEEMDMPEDEAESPVLKVGEEKEIGKNGLKKKLVKEGEGWETPDTGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFKLGEVRRSIPIYWNFVALFQSMLFFRFDSDTVVVYLISRWLFPSGQVIKGWDEGIRTMRKGENAVFTIPPGLAYGESGSPPTIPPNATLQFDVELLSWHSVKDICQDGGILKKILVKGDGWDKPKDLDEVLVHYEARREDGTLISRSDGVEFIVENGHFCPALATTVKTMKKGEKALLTVRPQYGFGESGRPAVGEEGVVPPNATLLITLELVSWKTVIDITKDKKVLKKTLKEGEGYEQPNDGAEVQVKLVGKLADGTIFAKKGDDEKPFEFKTDEEQVIEGLDLAVKKMKKGEIAMVTIHPQYAFGSSDSSQDLAVVPANSTVHYEVELVSFVKEKESWDLKTAEEKIEAAGRKKEEGNVLFKAGKYARASSRYEKAVRYIEYDTSFNDEEKQQCKALKILCNLNNAACKLKVKDYRQAEKLCSKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDLKKALEIDPENSFYTMKVKIDASAHVGVIIIQVKIELRQLKEKVREYNKRDAQFYGNIFAKMSKLESGKAASSAVKQEAVPMTIDSKA 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12466506 12470066 - CmoCh14G015610.1 Cmo14g01561 396827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01561 634 Coils Coil 576 596 - -
Cmo14g01561 634 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 19 311 - -
Cmo14g01561 634 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 423 619 - -
Cmo14g01561 634 SUPERFAMILY TPR-like 435 557 IPR011990 GO:0005515
Cmo14g01561 634 PANTHER PEPTIDYLPROLYL ISOMERASE 19 311 - -
Cmo14g01561 634 PANTHER PEPTIDYLPROLYL ISOMERASE 316 423 - -
Cmo14g01561 634 PANTHER PEPTIDYLPROLYL ISOMERASE 423 619 - -
Cmo14g01561 634 Gene3D Tetratricopeptide repeat domain 426 603 IPR011990 GO:0005515
Cmo14g01561 634 ProSiteProfiles TPR repeat profile. 524 557 IPR019734 GO:0005515
Cmo14g01561 634 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 316 423 - -
Cmo14g01561 634 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 332 423 IPR001179 GO:0003755
Cmo14g01561 634 SUPERFAMILY FKBP-like 309 437 - -
Cmo14g01561 634 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 54 92 IPR001179 GO:0003755
Cmo14g01561 634 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 326 420 IPR001179 GO:0003755
Cmo14g01561 634 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 211 301 IPR001179 GO:0003755
Cmo14g01561 634 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 132 184 IPR001179 GO:0003755
Cmo14g01561 634 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 59 187 IPR001179 GO:0003755
Cmo14g01561 634 SUPERFAMILY FKBP-like 38 186 - -
Cmo14g01561 634 Pfam Tetratricopeptide repeat 524 557 IPR001440 GO:0005515
Cmo14g01561 634 SMART tpr_5 441 474 IPR019734 GO:0005515
Cmo14g01561 634 SMART tpr_5 524 557 IPR019734 GO:0005515
Cmo14g01561 634 SMART tpr_5 490 523 IPR019734 GO:0005515
Cmo14g01561 634 MobiDBLite consensus disorder prediction 1 27 - -
Cmo14g01561 634 MobiDBLite consensus disorder prediction 1 22 - -
Cmo14g01561 634 Gene3D - 113 190 IPR046357 GO:0003755
Cmo14g01561 634 Gene3D - 12 110 IPR046357 GO:0003755
Cmo14g01561 634 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 215 304 IPR001179 GO:0003755
Cmo14g01561 634 Gene3D - 305 425 IPR046357 GO:0003755
Cmo14g01561 634 Gene3D - 191 304 IPR046357 GO:0003755
Cmo14g01561 634 SUPERFAMILY FKBP-like 190 305 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01561 Cmo-Chr14:12466506 Cmo17g01264 Cmo-Chr17:9947989 0 dispersed
Cmo19g00491 Cmo-Chr19:5849499 Cmo14g01561 Cmo-Chr14:12466506 1.83E-09 dispersed
Cmo14g01561 Cmo-Chr14:12466506 Cmo08g00243 Cmo-Chr8:1477784 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01561 K09571 - csv:101210041 961.444