Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01595 ATGGCGGCTAAGAAACTCTGTGAGACCTTCTCCAAGAGCCTGATCGACGAGGTTCAGAAATGGGGTTGCATGAAACAGACTGGGGTTAGCTTGAGATACATGATGGAGTTTGGTTTGAAGCCTACTCCCAGGAATTTGCTTATTTCTGCTCAGTTTCTTCACAAGGAGCTTCCAATTCGGATTGCTAGAAGAGCTATTGAACTCGAGAATCTTCCTTATGGCCTCTCTGTTAAACCTGCTGTTTTGAAGGTTCGCGACTGGTATTTGGATTCTTTCCGTGACCTTCGGGCCTTCCCCGAGATAAAGAACCCAGATGATGAAAAGGAGTTTACACAAATGATAAAGGCAATTAAGGTGAGACACAACAACGTGGTTCCGATGATGGCTTTAGGCGTTCAACAGCTGAAGAAGAGCATTGCTCTAGATAGTATTGGTTATCAAGATCTTCATGAGATTCATCAGTTTTTGGATCGCTTCTACATGTCGAGAATTGGGATTCGTATGCTCATTGGGCAGCATGTCGAATTACACAACCCCAATCCCCCTCCTGACTGTGTAGGATATATACACACAAAAATGTCTCCTGTGAAGGTCGCGGAGAGCGCCAGTGAGGATGCTCGTGCTATCTGTTTGCGTGAGTATGGCAGTGCCCCTAATATCAAAATCTATGGAGATCCAAGTTTTACATTTCCTTATGTTCCAACACATTTGCAACTTATGGTCTTTGAGTTGGTTAAGAACTCGTTACGTGCCGTGCAAGAGCGTTTTATGGATTCTGATAAAGTTGCTCCTCCAGTTAAAATTATAGTTGCTGATGGAATTGAGGATGTCACTATTAAGGTATCCGACGAGGGCGGTGGCATACCTCGAAGCGGGCTTCCCAGAATTTTCACCTACCTCTACACCACAGCAAAAAACCCTCTGGACGAACATCCCGATCTGGGAACAGCAGACTTGGTGACAATGGCTGGATATGGTTATGGCCTTCCGATAAGTCGTCTGTATGCCCGTTATTTTGGCGGGGATCTGCAAGTGATCTCCATGGAAGGATATGGTAAGTAG 1062 45.2 MAAKKLCETFSKSLIDEVQKWGCMKQTGVSLRYMMEFGLKPTPRNLLISAQFLHKELPIRIARRAIELENLPYGLSVKPAVLKVRDWYLDSFRDLRAFPEIKNPDDEKEFTQMIKAIKVRHNNVVPMMALGVQQLKKSIALDSIGYQDLHEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPDCVGYIHTKMSPVKVAESASEDARAICLREYGSAPNIKIYGDPSFTFPYVPTHLQLMVFELVKNSLRAVQERFMDSDKVAPPVKIIVADGIEDVTIKVSDEGGGIPRSGLPRIFTYLYTTAKNPLDEHPDLGTADLVTMAGYGYGLPISRLYARYFGGDLQVISMEGYGK 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12645904 12648387 - CmoCh14G015950.1 Cmo14g01595 396861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01595 353 Gene3D - 5 182 IPR036784 -
Cmo14g01595 353 ProSiteProfiles Histidine kinase domain profile. 234 353 IPR005467 -
Cmo14g01595 353 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 234 352 IPR003594 -
Cmo14g01595 353 Gene3D - 192 353 IPR036890 -
Cmo14g01595 353 PANTHER BNAA05G30880D PROTEIN 10 352 - -
Cmo14g01595 353 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 190 352 IPR036890 -
Cmo14g01595 353 PRINTS Bacterial sensor protein C-terminal signature 323 341 IPR004358 GO:0016310|GO:0016772
Cmo14g01595 353 PRINTS Bacterial sensor protein C-terminal signature 277 291 IPR004358 GO:0016310|GO:0016772
Cmo14g01595 353 PANTHER PYRUVATE DEHYDROGENASE KINASE 10 352 IPR039028 GO:0004672
Cmo14g01595 353 Pfam Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase 28 190 IPR018955 -
Cmo14g01595 353 SMART HKATPase_4 232 350 IPR003594 -
Cmo14g01595 353 CDD HATPase_PDK-like 194 352 - -
Cmo14g01595 353 SUPERFAMILY alpha-ketoacid dehydrogenase kinase, N-terminal domain 16 180 IPR036784 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01595 K00898 PDK2_3_4; pyruvate dehydrogenase kinase 2/3/4 [EC:2.7.11.2] - csv:101213546 682.945
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g256 . Blo12g00373 Bda03g00837 . Bpe04g00792 . Bma04g00735 . . . . Cma14g01560 . Car14g01375 . . Cpe03g01304 Bhi01g01126 Tan10g1120 . . Hepe05g1346 . . . . . . . . . Cone14ag0680 Cone15ag0692 . . Lsi05g01389 . . Cme06g00829 . . . . . . . . . . Cmo14g01595 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003282 1 3 1 1 1 2 1 2 2 2 2 2 1 2 2 1 2 2 1 2 2 1 1 1 1 2 1 2 3 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01595 Cmo_Chr14 FPKM 1.184701 0.0 0.0 0.0 2.507849 3.195314 2.326445 2.610267 1.736882 1.843776