Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01600 ATGGCTGAGAGCAGGAGATATGTTCCCATTCAGCATTTAGATCTAGTACAAATACTACAAGAAGCACAAAATAGGTGGCTTCGGCCAGCTGAAATATGTGAAATTCTTCGAAATTACCAAAAGTTTCAATTAGCACCGGATCCTCCAGTTCAGCCTCCAGCTGGATCCTTGTTCCTTTTTGATCGGAAAGCACTTAGATATTTTCGTAAAGATGGTCATAAATGGAGGAAGAAGAAAGATGGGAAAACTGTCAAAGAAGCCCATGAAAAGTTGAAGAGTGGAAGTGTGGATGTTCTGCATTGTTACTATGCACATGGTGAGGACAATGACAACTTCCAGCGAAGAAGTTATTGGATGCTGGATGAGCAATTAGAGCATATTGTCCTTGTGCATTACAGAGAAGTAAATGAGGGTTACAGGTCTGGCATATCTCGAGTTTCAGTTGATCCAGGGTCATTGGCTGAAGGTTGTCAAGGTGGTTCAACACCCATCTTTATGCAGGAAACTTCACTTGTTGGCTCAGTTCATACTTCAAGTCCATTAAGTCCTATGCAAACAGTGCGTTCAGAAAATGGGGGTGTGGATTCTAGTGCTAGGAATGACTCTGGAATCTCTTCTGATGTTCATCATGTGTTTAAATCCAGCATGCTGCCTGCATCTTTGCCTGCAGGTGATGTTTCAGGATCGTCTGATTTATGTGGACAAGAAATCGTGATTATTCAATCTGCCATAACTGATTCAATTACACATAAGTTAATAGATGCTAGATTGGCTTCTAGTGGCTTAGTAAAAAATATGGTAAATAGTGGGCATGGCTTGATTGCTGATGAAGAAGTACCTGCCGCAAAAGCAGTTTCTCAGAGAATTGTTCAGGTGGTAGACGACTCGTTTGTTCAGGTAGAAAAGACGTCCAAATATGATTTGAACCATGAAGGTTTTGGAGAACTCAAAAAACTTGACAGTTTTGGCAGATGGATGGATAAGGAAATTGGAAGAGATTGTGATGATTCTTTGATGACTTTGGACTCTGGTAATTACTGGTGTGCACTGGATGCTGGAAATGATGAGAAGGAAGTATCCAGTTTATCGCATCACATGCAGCTGGATATCGATTCACTGGGGCCTTCACTTTCCCAAGATCAGTTATTCAGTATTTCCGATTTTTCCCCAGATTGGGCATATTCTGGAAATGTAACAAAGGTCCTAATAGTTGGCTCGTTTTTGGGAAGCAAAAAACTTCCTGTAGAAACGCAGTGGGGATGCATGTTTGGGGAAGTTGAGGTTTCTGCAGAAGTTCTGTCAAACAGTGTACTTCGATGCCAAACTCCTCTGCATGCTCCAGGGCGTATTCCCTTCTATGTGACATGCTGTAATAGGCTAGCCTGCAGTGAGGTGAGAGAGTTTGAGTTTCGTGAAAAGCTACCAACCCTCTCTGTACCTAATGCTATCAAGTGTGCATCAGAAGATGAATTACGGTTTCAAATGCGTCTGACAAGGCTGTTGAATTTATGTTTAGAGGAAAAGTGGTTGGATTGCTCTATTAAAAACTGTGAGAAATGCAAAATCATAGGTTTGATGAAGTCATCCAGAAGTGATATTGCAAAATGGAGAATGATGGAAGGGATTTCTATTCCATTAATAAGTGATGGAATGAACCCTAGGGATTTTATGATCCAAACTTTGCTGGTGGACAAACTTTGTGAGTGGCTAGCATGCAAGGTTCATGAAGGAACTATGGGAACGCATGTTTTGGATGAAGAGGGCCTAGGCGTCATACATTTGGCAGCTGCACTTGGCTATGCATGGACCATAGGACCGATAATCGCTTCTGGGGTCAGTCCGAACTTCAGAGATTCGAAGGGAAGGACAGCTCTTCACTGGGCGTCTTACTTTGGGAGGGAAGAAACCGTCGCTACACTGGTTAGGTTAGGTGTTTCTCCTGGTGCCGTGGATGATCCAACTTCAGGATTTCCAGGAGGACAAACTGCTGCTGATTTGGCATCAAGTCGAGGGCATAAGGGAATTGCTGGATATTTGGCTGAAGCTGATCTTATAGCTCATTTACGTTCTTTGACTGATGGTGAAAATCTTAAGGACAACGTCAAAGAAAATGTTAACGTTGATGAAACTATTCAGACTGCAGATGTCGTATCATCGCAGTTGGCGGAAGACGAACTCCTTTCCCTCAAGGGTTCTCTCGCTGCTGTCAGGAAGTCTGTTCACGCTGCTGCCTTAATTCATGCTGCTTTCCGTGCTCGTTCATTTCGTCATAAACAATTAATGGGAAGTGACAAGGAGATGATACATGAAGAATCAGTTGACCTAGTGGCTCTCGGAATTTTAAACAAGGCTGAAAAAATTCACTATGAGGATTATCTCCACGTTGCAGCTGTGAGGATTCAACAAAATTATCGTGGCTGGAAGGGAAGAAAAGAGTTTTTGAAGATAAGAAACCGAATTGTAAAAATCCAGGCTCATGTGAGAGGATATCAAGTTCGTAAACTGTATAGAAAGGTCATATGGACAGTTAGCATTGTAGAAAAGGCAATTCTACGCTGGAGGCGGAAAAGAGTTGGTCTGCGAGGGTTCAAAGCCGAAGGGGCAACTGGAGAAGTTGCTTCCTCGCATTCACAGGTGGAGAAAAGTGATGACTATGAGTTTCTACGAATTGGGCGCCAGCTTAAATATGCTGATGTTGAAAAGGCGCTATCCAGAGTCAAGTCCATGGCTCGTTCTCCAGAGGCTCGCCATCAGTATATGAGATTAGTAACAAAGTTTCACATTTTTAAGATTAATGATGAAGAACCCAGTGGCTCAAATGAAGATGGAAGTTCCCAAGAAATCCAGAAGGAAGAGCAGAATTTGGCTTAA 2871 42.56 MAESRRYVPIQHLDLVQILQEAQNRWLRPAEICEILRNYQKFQLAPDPPVQPPAGSLFLFDRKALRYFRKDGHKWRKKKDGKTVKEAHEKLKSGSVDVLHCYYAHGEDNDNFQRRSYWMLDEQLEHIVLVHYREVNEGYRSGISRVSVDPGSLAEGCQGGSTPIFMQETSLVGSVHTSSPLSPMQTVRSENGGVDSSARNDSGISSDVHHVFKSSMLPASLPAGDVSGSSDLCGQEIVIIQSAITDSITHKLIDARLASSGLVKNMVNSGHGLIADEEVPAAKAVSQRIVQVVDDSFVQVEKTSKYDLNHEGFGELKKLDSFGRWMDKEIGRDCDDSLMTLDSGNYWCALDAGNDEKEVSSLSHHMQLDIDSLGPSLSQDQLFSISDFSPDWAYSGNVTKVLIVGSFLGSKKLPVETQWGCMFGEVEVSAEVLSNSVLRCQTPLHAPGRIPFYVTCCNRLACSEVREFEFREKLPTLSVPNAIKCASEDELRFQMRLTRLLNLCLEEKWLDCSIKNCEKCKIIGLMKSSRSDIAKWRMMEGISIPLISDGMNPRDFMIQTLLVDKLCEWLACKVHEGTMGTHVLDEEGLGVIHLAAALGYAWTIGPIIASGVSPNFRDSKGRTALHWASYFGREETVATLVRLGVSPGAVDDPTSGFPGGQTAADLASSRGHKGIAGYLAEADLIAHLRSLTDGENLKDNVKENVNVDETIQTADVVSSQLAEDELLSLKGSLAAVRKSVHAAALIHAAFRARSFRHKQLMGSDKEMIHEESVDLVALGILNKAEKIHYEDYLHVAAVRIQQNYRGWKGRKEFLKIRNRIVKIQAHVRGYQVRKLYRKVIWTVSIVEKAILRWRRKRVGLRGFKAEGATGEVASSHSQVEKSDDYEFLRIGRQLKYADVEKALSRVKSMARSPEARHQYMRLVTKFHIFKINDEEPSGSNEDGSSQEIQKEEQNLA 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12669516 12679349 + CmoCh14G016000.1 Cmo14g01600 396866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01600 956 MobiDBLite consensus disorder prediction 938 956 - -
Cmo14g01600 956 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Cmo14g01600 956 ProSiteProfiles IQ motif profile. 793 822 IPR000048 GO:0005515
Cmo14g01600 956 Pfam IQ calmodulin-binding motif 795 813 IPR000048 GO:0005515
Cmo14g01600 956 Pfam IQ calmodulin-binding motif 819 837 IPR000048 GO:0005515
Cmo14g01600 956 MobiDBLite consensus disorder prediction 933 956 - -
Cmo14g01600 956 ProSiteProfiles Ankyrin repeat profile. 620 652 IPR002110 GO:0005515
Cmo14g01600 956 Pfam Ankyrin repeats (many copies) 621 679 IPR002110 GO:0005515
Cmo14g01600 956 ProSiteProfiles Ankyrin repeat region circular profile. 620 652 - -
Cmo14g01600 956 ProSiteProfiles IQ motif profile. 816 844 IPR000048 GO:0005515
Cmo14g01600 956 MobiDBLite consensus disorder prediction 176 200 - -
Cmo14g01600 956 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Cmo14g01600 956 Pfam IPT/TIG domain 384 463 IPR002909 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01600 K21596 CAMTA; calmodulin-binding transcription activator - csv:101219268 1515.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01236 Cmo14g01600 CCT
Cmo14g01600 Cmo17g00349 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01236 Cmo-Chr8:7820141 Cmo14g01600 Cmo-Chr14:12669516 2.37E-144 dispersed
Cmo11g01484 Cmo-Chr11:10488400 Cmo14g01600 Cmo-Chr14:12669516 1.63E-61 dispersed
Cmo14g01600 Cmo-Chr14:12669516 Cmo16g00771 Cmo-Chr16:3866459 1.93E-56 dispersed
Cmo14g01600 Cmo-Chr14:12669516 Cmo19g00274 Cmo-Chr19:2003464 2.10E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g245 . . . . . . . . Cmo08g01236 Cmo17g00349 . Cma14g01565 . Car14g01381 . . Cpe03g01309 . . . . . . . . . . . . . . Cone14ag0685 Cone15ag0697 . . . . Chy11g01557 . . . . . . . . . . . Cmo14g01600 Cma08g01266 Cma17g00358 . Car17g00331 . . . . . . . . . . . . . . . . . . . Cme11g02068
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007961 0 8 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 3 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11037 PF03859 CG-1 4.40E-49 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01600 Cmo_Chr14 FPKM 8.50046 9.863041 8.274478 7.633334 24.241285 22.280069 27.74367 5.23992 6.335383 5.628175