Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01604 ATGGAAACTGGAGAGTCTGCTCCCCCTTCCCTTGGTCCTCGCTATGCACCGGACGACCCTACTCTTCCCAAACCCTGGAAGGGATTGATTGATGGGAGCACTGGACTGTTATACTACTGGAACCCTGAAACCAACGTAACTCAGTATGAAAAACCGGTCTCTTTGCCACCACCATTGCCGCTCGGTCCTCATCCTGGCGTCTCTTCGTCCAAGCCTACTTCAGTTTCGGAGGCTCATTCAATGCCATCAAATGGTGCATTAACACCGCATGTACAGAAAAATCATCATGTCCCTCAACAAGAAGGCCAATCAAATAGCCAACTTTCTCAACAACCTGGACATCTGATGTCACAACAGCACAGTTCTGTTGCCGGTCAGGCAACTGTTAATCACCATCCTGGCTTGCAAATGGCACCAGATGGGCGACAAAATAGCTCGCAATCGAACCAGGTCATGCAGCAACAGGGGCTGTTTGCAATGTCGTCACCACATCTTGGCCAGCAGCAGGTCATGCATCAAGGTCAGAAAATGGCACATGCAAATCCACAAATGTCTCAGCATCCAAATCAGCAACCCCCGCAGAATCCAGGACAACCCTTACAGAATCCAGGACAACAAATACCACAACCATCAATCCAGCATTTAGGACAGCCAAGCATGCAAAATCAAACGCCATTAGTTGGGCAGCCTCAAGGTCCGCAACCACAATATGGTCAGCAGCAGCTTCAGTATATCGGCTACCAGCAAAGTGTGCATCCAAGTGTGCAGCACAATTTGCAGCAGCAAGTTCAACAAAGTCCTTTAGGTCAACCATTTGGCAATCACCTTGAGCAGAAGTCAGCTTTTCTGAAGAGAGAGGAGGATAATATCCAGTCAGGAAACCAAGTTGGCTTTTCTTCTTCCCAGTTTGAACAAAGTGGTGGTACCTCATCTATTCATAACCTTCATCCTGGAACCAATTCTTCTCAAATGCAACAATTTGGTTCAGCATCAGACCAAGCACGACAATTTGGTGGCTCTCCAGGAAACATACAACAGCAGAATCCTGTGGTTCAATTGCAGCATGCAGGTACTGAATTGGCTCATCGCCAACATCATTCTAGATTCCAAGATCAGATGAGCCCAGCAGTGATGCAGGGGCAGCAAACTAGTGCTGAAAATTTGCCAGGTAGAGCTGGAAATGAATATTACTTTGGCAGGAATGAAGGGCCTGGCGTTGGTCCACTTCAACCAAGGCTTGCAGCAATACCAATGGCAAGGAGCCAGCAGGACACAAGGATGAGTGGTGTCTCATTTCCAACTGCAGCACCTGGCCATCCTAGTGGGACCAATTTTGCTGCTGGGCATTCACATAATATGTATAGCCATGGATCTGGTGGCCCACCATTGTCAAACAATGCTTTGATAGGCCCTCCTCATATTGGAGCTTCAGATGTCACTAATATGTCACCTGTTGAAGTTTATCGTCAACAGCATGAAGTAACTGCTACGGGTGATAACGTTCCATCTCCTTACATGACATTTGAGGCTACTGGCTTCCCTCCGGAGATACTGAGAGAGATATATTCTGCTGGTTTCTCTTCTCCAACGCCAATTCAAGCACAAACATGGCCAATTGCCCTGCAAGGTCGGGACATAGTTGCCATTGCTAAGACGGGGTCTGGAAAAACTTTGGGCTATTTGATTCCTGCCTTCATGCTTCTTAGGCAGTGCCGGAATAACCCTCAAAATGGACCAACGGTGTTGGTTTTGGCTCCTACTAGGGAACTTGCTACTCAAATACAAGATGAAGCTATTAAGTTTGGGAGGTCTTCCAGGATTTGTTGTACGTGTTTGTATGGTGGAGCCCCAAAAGGTCCTCAGCTAAAGGAGTTAGAACGTGGTGCTGATATTGTTGTGGCAACTCCTGGCCGGCTCAATGATATACTTGAAATGAAGATGATTAAGTTTAGGCAAATTTCACTTCTTGTGCTTGATGAAGCTGATCGAATGCTTGACATGGGATTTGAACCCCAAATTAGAAAGATTGTGAATGAAATACCACCACGCAGACAAACACTTATGTATACAGCAACCTGGCCCAAGGAAGTAAGAAAAATAGCGAATGATCTTCTAGTCAATTCTGTCCAGGTGAATATTGGCAGCGTTGATGAACTTGCTGCTAACAAGGCTATAACTCAGTATGTTGAAGTCGTTCCACAGATGGAAAAACAGAGACGGTTAGAACAGATTCTTAGGTCCCAAGAACGGGGATCTAAGGTAATAATTTTTTGTTCCACGAAGAGGCTATGTGATCAGCTTGCACGAAGTCTTGGTCGTGGTTTTGGGGCTGCTGCAATTCATGGAGACAAATCGCAGGGGGAGCGTGATTGGGTATTGAACCAGTTTCGTAGTGGAAAGTCCCCGATACTAGTTGCCACAGATGTTGCTGCCCGTGGGCTTGACATCAAAGATATAAGAGTGGTGATCAACTATGATTTTCCAACTGGAGTTGAGGACTATGTCCATCGAATTGGGAGAACTGGGAGGGCTGGAGCAACGGGAGTGGCATATACCTTCTTCACCGAACAGGATTGGAAATATGCTGCTGATTTGATTAAACTACTGGAGGGTGCGGATCAGCATGTGCCTGCTGAGTTGCGAGATATGGCTATGCGTGGTGGGCCAAGTTTTGGGAAGGATAGGGGTGGGATGGGTCGTTTTGATGCAGTTATGGGCGGCAGTCGCTGGGATTCAGGAGGCCGGGGTGGCATGAGAGATGGTGGGTTTGGTGGTCGCGGTGGTGCAAGGGATGGTGGGTTTGGTGGCCGTGGTGGGATGAGAGATGGTGGGTTTGGTGGTCGTGGTAACATGAGGGATGGTACTGCTGGTGGACGAGGTGGGAGAGGTGATTTCTTTTCTACACGGGGTAGAGGACGGGGTTTCGGTGGCCCTGCTGGAGGTCATGTTGGTTGGGGAAGGGGGGGTGATCGTGGCGGGCCACATGATAGGTTCAGTAGTGTGGATGGTCGTGGACGTGGGCGTGGACAGAGTCGATTTGATAATAGAAACGACTTCAGTAATAGGAGTAGAGGCAGAAGTTACAGCCGCAGTCCTGAAAGAGTCCGAACATGGGGTTACAGTCGCAGTCGCAGTCGCAGTGGTAGTCGTAGTCGTAGTAGTAGAAGCTGGAGTAGAAGCCGTAGCAGGAGTAGCAGGAGCAGGAGTCGGAGTTGGTCCCGCCGTCACAGCCGAAGCCGTAGTCGTAGCCGTAGCCACGATAATTACGGGCGTTCGCGTGAGCGGAACTTCGATAGGAAAGACGACCAACCTCCAGAATCAGTAACTGCAACGTCTCATGGCACACGAAAGAGCGGTTTTGACGATAGAGGTGATGCGGGGCAGGTTCCTCCTGTGGCGGCCAGCAGTAATATCGAGCCAGGGAAACCAGAAAATAGTGCAGAAGATACGAGCGATGGAACTGTTAATGCAGCAGCTCAAGTGATATGA 3489 48.72 METGESAPPSLGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPVSLPPPLPLGPHPGVSSSKPTSVSEAHSMPSNGALTPHVQKNHHVPQQEGQSNSQLSQQPGHLMSQQHSSVAGQATVNHHPGLQMAPDGRQNSSQSNQVMQQQGLFAMSSPHLGQQQVMHQGQKMAHANPQMSQHPNQQPPQNPGQPLQNPGQQIPQPSIQHLGQPSMQNQTPLVGQPQGPQPQYGQQQLQYIGYQQSVHPSVQHNLQQQVQQSPLGQPFGNHLEQKSAFLKREEDNIQSGNQVGFSSSQFEQSGGTSSIHNLHPGTNSSQMQQFGSASDQARQFGGSPGNIQQQNPVVQLQHAGTELAHRQHHSRFQDQMSPAVMQGQQTSAENLPGRAGNEYYFGRNEGPGVGPLQPRLAAIPMARSQQDTRMSGVSFPTAAPGHPSGTNFAAGHSHNMYSHGSGGPPLSNNALIGPPHIGASDVTNMSPVEVYRQQHEVTATGDNVPSPYMTFEATGFPPEILREIYSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFMLLRQCRNNPQNGPTVLVLAPTRELATQIQDEAIKFGRSSRICCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIKFRQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIANDLLVNSVQVNIGSVDELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARSLGRGFGAAAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFTEQDWKYAADLIKLLEGADQHVPAELRDMAMRGGPSFGKDRGGMGRFDAVMGGSRWDSGGRGGMRDGGFGGRGGARDGGFGGRGGMRDGGFGGRGNMRDGTAGGRGGRGDFFSTRGRGRGFGGPAGGHVGWGRGGDRGGPHDRFSSVDGRGRGRGQSRFDNRNDFSNRSRGRSYSRSPERVRTWGYSRSRSRSGSRSRSSRSWSRSRSRSSRSRSRSWSRRHSRSRSRSRSHDNYGRSRERNFDRKDDQPPESVTATSHGTRKSGFDDRGDAGQVPPVAASSNIEPGKPENSAEDTSDGTVNAAAQVI 1162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12689868 12696115 + CmoCh14G016040.1 Cmo14g01604 396870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01604 1162 MobiDBLite consensus disorder prediction 165 238 - -
Cmo14g01604 1162 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 657 665 IPR000629 -
Cmo14g01604 1162 MobiDBLite consensus disorder prediction 909 1162 - -
Cmo14g01604 1162 CDD WW 23 53 IPR001202 GO:0005515
Cmo14g01604 1162 MobiDBLite consensus disorder prediction 67 129 - -
Cmo14g01604 1162 MobiDBLite consensus disorder prediction 1 28 - -
Cmo14g01604 1162 MobiDBLite consensus disorder prediction 1034 1055 - -
Cmo14g01604 1162 MobiDBLite consensus disorder prediction 989 1031 - -
Cmo14g01604 1162 SMART ultradead3 525 728 IPR014001 -
Cmo14g01604 1162 Gene3D - 480 714 IPR027417 -
Cmo14g01604 1162 Gene3D - 715 887 IPR027417 -
Cmo14g01604 1162 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 309 980 - -
Cmo14g01604 1162 SMART ww_5 21 54 IPR001202 GO:0005515
Cmo14g01604 1162 MobiDBLite consensus disorder prediction 200 238 - -
Cmo14g01604 1162 Pfam DEAD/DEAH box helicase 530 700 IPR011545 GO:0003676|GO:0005524
Cmo14g01604 1162 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 506 534 IPR014014 GO:0003724
Cmo14g01604 1162 MobiDBLite consensus disorder prediction 1056 1082 - -
Cmo14g01604 1162 SMART helicmild6 761 845 IPR001650 -
Cmo14g01604 1162 Pfam WW domain 22 52 IPR001202 GO:0005515
Cmo14g01604 1162 Pfam Helicase conserved C-terminal domain 737 845 IPR001650 -
Cmo14g01604 1162 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Cmo14g01604 1162 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 309 980 - -
Cmo14g01604 1162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 577 862 IPR027417 -
Cmo14g01604 1162 MobiDBLite consensus disorder prediction 1139 1162 - -
Cmo14g01604 1162 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 740 884 IPR001650 -
Cmo14g01604 1162 SUPERFAMILY WW domain 17 53 IPR036020 GO:0005515
Cmo14g01604 1162 MobiDBLite consensus disorder prediction 299 325 - -
Cmo14g01604 1162 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Cmo14g01604 1162 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 537 711 IPR014001 -
Cmo14g01604 1162 CDD SF2_C_DEAD 725 854 - -
Cmo14g01604 1162 Gene3D - 16 54 - -
Cmo14g01604 1162 MobiDBLite consensus disorder prediction 165 191 - -
Cmo14g01604 1162 MobiDBLite consensus disorder prediction 49 151 - -
Cmo14g01604 1162 MobiDBLite consensus disorder prediction 1083 1106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01604 K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] - csv:116401623 1635.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01239 Cmo-Chr2:7447457 Cmo14g01604 Cmo-Chr14:12689868 7.67E-105 dispersed
Cmo09g00021 Cmo-Chr9:123091 Cmo14g01604 Cmo-Chr14:12689868 3.03E-105 dispersed
Cmo10g00101 Cmo-Chr10:433222 Cmo14g01604 Cmo-Chr14:12689868 3.30E-110 dispersed
Cmo11g01675 Cmo-Chr11:11888287 Cmo14g01604 Cmo-Chr14:12689868 4.11E-09 dispersed
Cmo14g00676 Cmo-Chr14:3444499 Cmo14g01604 Cmo-Chr14:12689868 2.70E-18 dispersed
Cmo14g01301 Cmo-Chr14:10876386 Cmo14g01604 Cmo-Chr14:12689868 2.85E-160 dispersed
Cmo14g01604 Cmo-Chr14:12689868 Cmo19g00224 Cmo-Chr19:1500574 2.57E-103 dispersed
Cmo15g01458 Cmo-Chr15:9875262 Cmo14g01604 Cmo-Chr14:12689868 2.66E-58 dispersed
Cmo08g00129 Cmo-Chr8:679513 Cmo14g01604 Cmo-Chr14:12689868 3.98E-44 transposed
Cmo15g01277 Cmo-Chr15:8750817 Cmo14g01604 Cmo-Chr14:12689868 1.07E-51 transposed
Cmo14g01604 Cmo-Chr14:12689868 Cmo06g01576 Cmo-Chr6:11088080 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g228 . . . . . . . . . . . Cma14g01570 . Car14g01384 . Cpe08g00137 Cpe03g01312 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo14g01604 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003909 1 2 1 1 1 1 2 1 2 1 2 2 2 1 2 2 1 2 2 2 1 2 1 1 2 1 1 2 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01604 Cmo_Chr14 FPKM 30.217949 22.826923 17.111742 21.84474 28.735895 18.961283 36.660934 26.840179 26.261698 37.389164