Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01612 ATGGACAAGAAGCTTGAAGACACAATGATGGGGTCTGAGAATTCTGCCGGAAAATACTCTCCGGTGGGGTTTTCCGATGACTTCCCGGCGACTAGCTTTGGTTCTTCTAATTCCTTTGACTTATTGGGGAGTGGAATTGATTTTTACAATCCTTTATCTTCCTTGTTTGATTTGGTTTCTACGACGGCGCCGCTGCTTTCCTCACCGGCCTCCACCGTGCCGGAGTCGTCGGAGGTTGTCAATGCTCCGCCCACTCCTAATTCTTCCTCTGTTTCTTCTTACTCCAATGACGCTGCCGCCATTGATGAAGTTGACAAGAACAACACCGAGAAGCCTTCTTCTTCTAATGTGTTGAAGCCAAAAAAGAAGAACCAAAAGAAGCAAAGAGAGCCGAGATTTGCTTTCATGACGAAGAGTGATATCGATCATCTTGATGATGGGTATCGGTGGCGAAAGTACGGTCAAAAAGCCGTGAAGAACAGTCCGTACCCTAGAAGCTATTACCGTTGTACTACGGTAGGGTGTGGTGTGAAAAAGAGAGTGGAGCGATTGTCCAACGACCATTCGACCGTCGTTACAACTTACGAAGGCCAACACACCCATCAAAGTCCGATAATGCCACGAGGTAGTATCAGAGTCATACCCGGATCCAATCTCGACATTACTACCACCACTGGACTTTTATTCCAACCCAACACTCCCCAACCCTTCATGTATAGCCCTCCACCGCCATTTCTAACAATCAACTCGTTGTCAACGAACCCTCGTCCTCCTTCTTCCTTCCCGCCTCCACCGCCACCGCCACCGTCGTCTCAAGCTTCCGTGCTCCGAGACCATGGGCTTCTACAGGACTTGGTGCCATTGCAAATGAGGAAGGAACCAAAAGATGAAGAAAATGGATGA 903 48.5 MDKKLEDTMMGSENSAGKYSPVGFSDDFPATSFGSSNSFDLLGSGIDFYNPLSSLFDLVSTTAPLLSSPASTVPESSEVVNAPPTPNSSSVSSYSNDAAAIDEVDKNNTEKPSSSNVLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERLSNDHSTVVTTYEGQHTHQSPIMPRGSIRVIPGSNLDITTTTGLLFQPNTPQPFMYSPPPPFLTINSLSTNPRPPSSFPPPPPPPPSSQASVLRDHGLLQDLVPLQMRKEPKDEENG 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12805350 12806755 - CmoCh14G016120.1 Cmo14g01612 396878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01612 300 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 63 249 IPR044810 GO:0003700
Cmo14g01612 300 SMART WRKY_cls 144 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo14g01612 300 Gene3D WRKY domain 128 205 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo14g01612 300 MobiDBLite consensus disorder prediction 67 97 - -
Cmo14g01612 300 MobiDBLite consensus disorder prediction 1 21 - -
Cmo14g01612 300 MobiDBLite consensus disorder prediction 67 134 - -
Cmo14g01612 300 MobiDBLite consensus disorder prediction 256 272 - -
Cmo14g01612 300 Pfam WRKY DNA -binding domain 145 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo14g01612 300 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 63 249 - -
Cmo14g01612 300 MobiDBLite consensus disorder prediction 236 278 - -
Cmo14g01612 300 SUPERFAMILY WRKY DNA-binding domain 136 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo14g01612 300 ProSiteProfiles WRKY domain profile. 139 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo14g01612 Cmo17g00367 CCT
Cmo14g01612 Cmo17g00367 ECH
Cmo06g01565 Cmo14g01612 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00472 Cmo-Chr8:2911698 Cmo14g01612 Cmo-Chr14:12805350 4.49E-15 dispersed
Cmo14g01612 Cmo-Chr14:12805350 Cmo19g01110 Cmo-Chr19:9444514 3.08E-44 dispersed
Cmo14g01612 Cmo-Chr14:12805350 Cmo17g00367 Cmo-Chr17:2255107 7.14E-75 wgd
Cmo14g01612 Cmo-Chr14:12805350 Cmo06g01565 Cmo-Chr6:11028323 4.20E-115 wgd
Cmo14g01612 Cmo-Chr14:12805350 Cmo08g01254 Cmo-Chr8:7916221 3.37E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11039 PF03106 WRKY 4.80E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01612 - - cmos:111457825 540.421