Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01619 ATGGTTTCCAGTAATCGAGCGACGCATTGGCATCAACAACAAGCACAGTCCTCGAACACGAATACCAGCAATTTCCGATCTCACCGTACAGATTCTATCAACAAAGCCATAGCGCAGTACACAGCCGATGCTCGTCTTCACGCGGTGTTCGAGCAGTCAGGTGAGTCTGGGAAATCTTTTGACTACTCACAATCTATAAGAACTTCGACGCAATCTGTGCCGGAGCAGCAAATTACTGCTTATTTGTCGAAGATTCAAAGAGGCGGCCATATCCAGCCCTTTGGATGTATGATAGCCATAGATGAGGCTAGTTTTCGGGTTATTGCATACAGTGAGAACGCTAGGGAATTGCTCGGTTTAACTCCCCAATCAGTGCCGAGTCTTGAAAAGCCTGAGATCCTCACAATTGGGACTGATGTACGGAATTTGTTCACTTCCAACAGTGCAATTCTGCTCGAGAAGGCATTTGGGGCGCGAGAAATCACTTTGTTGAACCCTGTTTGGATTCATTCCAAGAATTCTGGTAAGCCTTTTTACGCAATTTTGCATAGGATTGATGTGGGAATTGTGATTGATTTGGAGCCTGCAAGAACGGAGGATCCTGCCCTTTCTATTGCTGGCGCAGTCCAATCGCAAAAACTTGCGGTACGTGCTATTTCTCAGTTGCAATCACTCCCTGGTGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGATATGATAGGGTTATGGTGTATAAATTTCATGAGGATGAGCATGGTGAGGTTGTGGCTGAAAGCAAGAGGGCTGACTTAGAGCCATACATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCAAGATTTTTGTTTAAGCAAAACCGTGTTAGGATGATCGTTGATTGCAATGCCTCTCCAGTTCGTGTAATTCAGGAGCCAGGGCTTATGCAACATCTATGCTTGGTGGGTTCAACTCTTCGTGCTCCCCATGGCTGCCATGCTCAGTATATGGCCAATATGGGCTCCATTGCTTCGTTAGCAATGGCAGTTATTATCAATGGTAATGATGATGAAGCTATTGGCGGGCAAAACTCAACAAGGCTTTGGGGTTTGGTTGTATGCCACCATACTTCTGCTCGGTGTATTCCGTTCCCGCTTCGGTATGCCTGTGAGTTTCTAATGCAAGCCTTTGGGCTTCAACTGAATATGGAATTGCAGTTGGCTTCACAGATGTCTGAGAAACATGTTTTGAGGACTCAAACTCTCTTGTGTGACATGCTTCTTCGTGATTCCCCAACTGGGATTGTTACACAGAGTCCAAGCATCATGGACCTAGTAAAGTGTGATGGGGCAGCTCTCTACTATCAAGGGAAATATTACCCTCTGGGTGTTACGCCAACCGAGGCCGAAATAAAGGATATTGTGGAATGGTTGTTGGCTTTCCATGGAGATTCAACTGGTTTAAGTACAGATAGCTTGGGTGATGCTGGATATCCAGGGGCAGCCTTGCTAGGTGATGCAGTTTGTGGAATGGCTGTTGCTTACATCACAAAAAGGGATTTGCTATTTTGGTTCCGATCACATACAGCAAAAGAGATCAAATGGGGTGGCGCAAAGCATCACCCAGAGGATAAGGACGATGGTCAAAGAATGCATCCACGTTCATCATTCAAGGCATTCTTGGAAGTTGTAAAATCCCGTAGTTTACCATGGGAGAATGCAGAAATGGATGCAATTCACTCATTGCAGCTTATTCTGCGAGACTCATTTAAGGAAGATGTGGCAATGACTTCAAAGGCAGTTGTGCACCCTCAACTAGGGGATCTTGACTTGCAAGGGATCGACGAGCTCAGCTCAGTTGCAAGAGAAATGGTCAGGTTAATTGAGACTGCAACTGCCCCTATCTTTGCTGTAGATGCCGATGGTCATATCAATGGATGGAACGCGAAGATAGCTGAGTTGACTGGGCTTGCAGCTGAGGAAGCTATGGGGAAATCCTTAGTTCGTGATCTTGTGTATAAAGAATCTGAAGAAACAGTCGACAAACTTGTTTCCCGGGCTTTAAAAGGTGAAGAAGACAAAAATGTAGAGATAAAAATGAAGACATTTGGGCCGGAAGATCAAAGAACGCCAATTTTTGTGGTTGTAAATGCTTGCTCTAGCAGGGACTACACCGATAATATAGTTGGCGTTTGTTTTGTTGGTCAAGATGTTACCTGCCAAAAAGTGTTCATGGACAAATTTATTAGCATACAAGGTGATTACAAAGCAATCGTTCATAGTCCAAATCCTCTTATCCCTCCAATATTTGCTTCAGACGACAATACATGTTGCTCAGAATGGAATACCGCCATGGAAAAGCTCACTGGATGGTCCAAAGAGGAGATAATTGGAAAAATGCTAGTAGGAGAAGTTTTTGGAAGTTGTTGTCGACTGAAGGGTCCAGATGCATTGACCAAATTTATGATTGTCTTGCACAGTGCAATTGGTGGGCAGGACAATGAAAAATACCCCTTTTCTTTTTATGACAAAAAGGGGAAATATGTGCAAGCTCTCCTAACAGCAAATAAGAGGATGAATATGGAGGGTCAGATTGTTGGAGCTTTCTGCTTCTTACAGATAGCTAGTCCTGAATTGCAGCAAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACCGGTTCGCTAGGATGAAAGAGCTGGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGTATACGCTTCACTAACTCACTTTTGGAGGCTACAGATTTGAGTGAAGATCAAAAACAGTTCCTCGAGACCAGTGTTGCTTGTGAAAAGCAGATGTTGAAGATTATAGAAGATATGGATTTGGAATGCATTGATGATGGTACGATGGAACTTGAGAAGGGGGAGTTCTTATTGGGAAGTGTTATCAATGCTGTTGTTAGCCAAGTAATGATACTCCTCAGAGAAAGGAACTTACAGCTGATCCGTGATATACCAGAAGAAGTAAAGACTATGGCTGTCTATGGCGATCAAATGAGGATTCAACAAGTCTTAGCTGATTTCTTGTTGAATATGGTCCGTTACGCACCCTCTCCAGAAGGTTGGGTAGAAATACGTGTCTGTCCATTCCTGAAGCAAAATCCAGATGGACATACTCTTGCACACACTGAATTCAGGATTGTATGCCCTGGGGAAGGTCTACCACCTGAGTTGGTTCAGGACATGTTTCATAGTGGCAGATGGGTGACTCAAGAAGGCTTAGGCTTAAGCATGTGCAGAAAGATATTGAAGCTCATGAATGGTGAAGTCCAGTACATCAGAGAGTCTGAAAGGTGTTATTTCTTGATCACTCTCGAACTCCCCTTGACAGAGAGAGGCCTAAACGACGTCGTCATTGTTCATAAGCCGAGCTCTGAACTTACATGTCGTCGAGGCCGTGTGATATAA 3447 44.1 MVSSNRATHWHQQQAQSSNTNTSNFRSHRTDSINKAIAQYTADARLHAVFEQSGESGKSFDYSQSIRTSTQSVPEQQITAYLSKIQRGGHIQPFGCMIAIDEASFRVIAYSENARELLGLTPQSVPSLEKPEILTIGTDVRNLFTSNSAILLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRADLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCNASPVRVIQEPGLMQHLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDDEAIGGQNSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQMSEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAEIKDIVEWLLAFHGDSTGLSTDSLGDAGYPGAALLGDAVCGMAVAYITKRDLLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKEDVAMTSKAVVHPQLGDLDLQGIDELSSVAREMVRLIETATAPIFAVDADGHINGWNAKIAELTGLAAEEAMGKSLVRDLVYKESEETVDKLVSRALKGEEDKNVEIKMKTFGPEDQRTPIFVVVNACSSRDYTDNIVGVCFVGQDVTCQKVFMDKFISIQGDYKAIVHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSKEEIIGKMLVGEVFGSCCRLKGPDALTKFMIVLHSAIGGQDNEKYPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFLQIASPELQQTLRMQRQQEKNRFARMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVACEKQMLKIIEDMDLECIDDGTMELEKGEFLLGSVINAVVSQVMILLRERNLQLIRDIPEEVKTMAVYGDQMRIQQVLADFLLNMVRYAPSPEGWVEIRVCPFLKQNPDGHTLAHTEFRIVCPGEGLPPELVQDMFHSGRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLITLELPLTERGLNDVVIVHKPSSELTCRRGRVI 1148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12864015 12869343 - CmoCh14G016190.1 Cmo14g01619 396885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01619 1148 ProSiteProfiles PAS repeat profile. 756 808 IPR000014 -
Cmo14g01619 1148 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 885 953 IPR036097 GO:0000155|GO:0007165
Cmo14g01619 1148 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 199 IPR035965 -
Cmo14g01619 1148 Pfam PAS fold 625 740 IPR013767 GO:0006355
Cmo14g01619 1148 Pfam PAS fold 756 875 IPR013767 GO:0006355
Cmo14g01619 1148 Gene3D PAS domain 769 877 - -
Cmo14g01619 1148 CDD HisKA 897 953 IPR003661 GO:0000155|GO:0007165
Cmo14g01619 1148 SUPERFAMILY GAF domain-like 209 404 - -
Cmo14g01619 1148 TIGRFAM sensory_box: PAS domain S-box protein 629 742 IPR000014 -
Cmo14g01619 1148 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 229 397 IPR016132 -
Cmo14g01619 1148 Gene3D - 960 1126 IPR036890 -
Cmo14g01619 1148 SUPERFAMILY PYP-like sensor domain (PAS domain) 770 874 IPR035965 -
Cmo14g01619 1148 Pfam GAF domain 229 407 IPR003018 GO:0005515
Cmo14g01619 1148 MobiDBLite consensus disorder prediction 1 27 - -
Cmo14g01619 1148 Gene3D - 412 585 IPR043150 -
Cmo14g01619 1148 PRINTS Phytochrome signature 144 166 IPR001294 GO:0006355|GO:0009584
Cmo14g01619 1148 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355|GO:0009584
Cmo14g01619 1148 PRINTS Phytochrome signature 644 659 IPR001294 GO:0006355|GO:0009584
Cmo14g01619 1148 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355|GO:0009584
Cmo14g01619 1148 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355|GO:0009584
Cmo14g01619 1148 PRINTS Phytochrome signature 718 735 IPR001294 GO:0006355|GO:0009584
Cmo14g01619 1148 PRINTS Phytochrome signature 329 350 IPR001294 GO:0006355|GO:0009584
Cmo14g01619 1148 PRINTS Phytochrome signature 625 641 IPR001294 GO:0006355|GO:0009584
Cmo14g01619 1148 PRINTS Phytochrome signature 738 758 IPR001294 GO:0006355|GO:0009584
Cmo14g01619 1148 PRINTS Phytochrome signature 244 263 IPR001294 GO:0006355|GO:0009584
Cmo14g01619 1148 CDD PAS 633 740 IPR000014 -
Cmo14g01619 1148 CDD HATPase_Phy-like 1008 1120 IPR044767 -
Cmo14g01619 1148 Gene3D - 878 959 - -
Cmo14g01619 1148 SMART HisKA_10 897 961 IPR003661 GO:0000155|GO:0007165
Cmo14g01619 1148 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 972 1121 IPR036890 -
Cmo14g01619 1148 SMART pas_2 624 691 IPR000014 -
Cmo14g01619 1148 SMART pas_2 755 825 IPR000014 -
Cmo14g01619 1148 ProSitePatterns Phytochrome chromophore attachment site signature. 329 338 IPR013516 -
Cmo14g01619 1148 Pfam His Kinase A (phospho-acceptor) domain 901 961 IPR003661 GO:0000155|GO:0007165
Cmo14g01619 1148 Gene3D PAS domain 620 744 - -
Cmo14g01619 1148 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1009 1121 IPR003594 -
Cmo14g01619 1148 ProSiteProfiles Histidine kinase domain profile. 904 1124 IPR005467 -
Cmo14g01619 1148 Gene3D PAS domain 84 332 - -
Cmo14g01619 1148 ProSiteProfiles PAS repeat profile. 622 693 IPR000014 -
Cmo14g01619 1148 SUPERFAMILY PYP-like sensor domain (PAS domain) 627 736 IPR035965 -
Cmo14g01619 1148 PIRSF Phytochrome_conventional 12 1129 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cmo14g01619 1148 Pfam PAS fold 80 196 IPR013654 GO:0006355
Cmo14g01619 1148 CDD PAS 767 875 IPR000014 -
Cmo14g01619 1148 PANTHER TWO-COMPONENT HISTIDINE KINASE 8 1126 - -
Cmo14g01619 1148 Pfam Phytochrome region 420 594 IPR013515 GO:0006355|GO:0009584
Cmo14g01619 1148 SMART gaf_1 229 417 IPR003018 GO:0005515
Cmo14g01619 1148 SUPERFAMILY GAF domain-like 415 592 - -
Cmo14g01619 1148 SMART HKATPase_4 1009 1124 IPR003594 -
Cmo14g01619 1148 Gene3D - 210 568 IPR029016 -
Cmo14g01619 1148 PANTHER PHYTOCHROME 8 1126 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01560 Cmo14g01619 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00967 Cmo-Chr5:7775625 Cmo14g01619 Cmo-Chr14:12864015 0 dispersed
Cmo13g00596 Cmo-Chr13:6604946 Cmo14g01619 Cmo-Chr14:12864015 0 dispersed
Cmo14g01619 Cmo-Chr14:12864015 Cmo18g00427 Cmo-Chr18:2811865 0 dispersed
Cmo14g01619 Cmo-Chr14:12864015 Cmo06g01560 Cmo-Chr6:10988616 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01619 K12121 - csv:101212197 2182.14