Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01623 ATGGATTCATCAAGAGCACTGTCTCATTCGATTGATGTTCCGGCGACCTCACAAGGAAGCTCTGAGGAAGAATCTCTCCTATCTTCCATTGAAGGAAAATTGGAAGCCTTCTGTTCATCCATTACCATCTTCAGAGCTCCAAATGAAATCAGTATCGAAGATAGAAACGTCTTCGTCCCTGCCAAAGTCTCAATCGGTCCTTTCCACCACGGCGCGCCACATCTCGAATCAATGGAAAATCTTAAGTGGTGCTACTTGTCCGCTTTCTTGAAGAACAATCCGTCCGTCGATTTACAATATCTTGTTGAACTCGTTGTTAAATCTGAGAGCCGATTGAGAAAATGCTATGAGGAAGAGTTTTATGGTTTCGACAGCGATAAGTTTTCGCAGATTATGTTGCTTGATTGCTGCTTCATTCTCGAGCTGCTTTTGCGATTCTCGAAAAAGAGGCTCAGGCGACGGAATGACTCTGTTTTCACTACTCCTGGTTTGCTCTTCGATTTGAGATGCGACTTGATGTTGCTTGAAAATCAGATTCCCTACTTCCTTCTCAAAGACGTTTATGAAAATGTGCAAGATCCGACCGAGGAAAATATGTCTCTCAATGACCTAACCTTCCGATTCTTCAAAACTATGGTTGCTGGAGATCGGCAATTAGTTTACGACAATTTCATGGTGGAAGCAGATCATCTACTCGAAATGGTTCACTCTTGTTTTCTCTCCACCTATCCTCGAGTGGAGACGAACGACAAATCGAAGTCGAAAGAATTACCTACTGCGTCGAAGCTTAAAACTGCGGGAATCAAAATCAAGAACGCCAGATCTTCAAAGAGCTTATTAGACATCAAATTTCAGAACGGCGTCCTCGAAATTCCACCTCTCAAGGTGTATCAGAAAACAGAGGTGATTCTGAGGAATCTCGTAGCGTATGAGATCCATCAATCCGGAAGCGACCGGCAAGTGAAATCATACATCAATTTCATGAGCCACCTTCTCCAGTCAGATCAAGACGTGAAGATTCTCTATAGAAGAAAAATCCTAAACGATCAGGAGGACGACGAGGAGCAGATTATTCGAAATCTGAAATGGATGAGCGAGAGGGAAAGCTTATCGGGAACGTACTTTGCCGGCATTGTTCAGAAACTAAACGAGAAGCCGGACCGATGCGTCGCACGGTGGCGGAAGTTGAGAAGGACTCCAGTGGCCATCGGCATCGTCGCCGTTTTGGTGGTGGTTGTGATCTTCGTCGCGGCCTTCTTCTCTGCATTTTCATCGGACACGGCATCCGTCTGCGCCAAATTCGTGTTTGCATTCAATAATTGTTTTCTTCGTGGAGTCTCTGCCATTGAAGTTGCGCCCCTTCTTCCAAATTCCTCTGATCAAAAGCTTCCCAACAATCATTCCACGATCTCTGCAGAAGTGAAACGCAAAGAGAAAATGGACGGTGAACGGAGAATCGGAGTTGCAGTGGATTTCTCACTCTGCAGCAAAAAAGCACTCAAATGGACTATCGATAATGTTATCCGTAAAGGTGATTACCTAATTCTCATCACTGTTCGTCCTGAAGGCGATTATGAAGACGGCGAGATGCAGCTCTGGCAAACTACCGGATCTCCGCTTATTCCTCTGTCTGAGTTCTCCGATCCTCACACCATGAAGAAGTACGGGATTAAGCCGGATGCTGAAACTCTGGACATCGTGACGACGGCGGCCGCCCAGAAGGAGATCACTGTATTGCTTAAGGTTTATTGGGGAGATGCTGGAGAGAAGATTTGTGAAGCAATTGATCAGGTTCCTATCAGCTGTCTCGTCATTGGGAACAGAGGTCTTGGCATGCTTAAGAGGGCAATATTGGGGAGTGTAAGCAACTATGTGGTGAACAATAGCTCCTGTCCAGTCACTGTGGTGAAGAAAGGAGATCATGACCACTGA 1932 45.55 MDSSRALSHSIDVPATSQGSSEEESLLSSIEGKLEAFCSSITIFRAPNEISIEDRNVFVPAKVSIGPFHHGAPHLESMENLKWCYLSAFLKNNPSVDLQYLVELVVKSESRLRKCYEEEFYGFDSDKFSQIMLLDCCFILELLLRFSKKRLRRRNDSVFTTPGLLFDLRCDLMLLENQIPYFLLKDVYENVQDPTEENMSLNDLTFRFFKTMVAGDRQLVYDNFMVEADHLLEMVHSCFLSTYPRVETNDKSKSKELPTASKLKTAGIKIKNARSSKSLLDIKFQNGVLEIPPLKVYQKTEVILRNLVAYEIHQSGSDRQVKSYINFMSHLLQSDQDVKILYRRKILNDQEDDEEQIIRNLKWMSERESLSGTYFAGIVQKLNEKPDRCVARWRKLRRTPVAIGIVAVLVVVVIFVAAFFSAFSSDTASVCAKFVFAFNNCFLRGVSAIEVAPLLPNSSDQKLPNNHSTISAEVKRKEKMDGERRIGVAVDFSLCSKKALKWTIDNVIRKGDYLILITVRPEGDYEDGEMQLWQTTGSPLIPLSEFSDPHTMKKYGIKPDAETLDIVTTAAAQKEITVLLKVYWGDAGEKICEAIDQVPISCLVIGNRGLGMLKRAILGSVSNYVVNNSSCPVTVVKKGDHDH 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12893415 12898227 + CmoCh14G016230.1 Cmo14g01623 396889

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01623 643 MobiDBLite consensus disorder prediction 1 24 - -
Cmo14g01623 643 Pfam Universal stress protein family 484 637 IPR006016 -
Cmo14g01623 643 CDD USP_Like 485 636 - -
Cmo14g01623 643 PRINTS Universal stress protein signature 597 609 IPR006015 -
Cmo14g01623 643 PRINTS Universal stress protein signature 483 501 IPR006015 -
Cmo14g01623 643 PRINTS Universal stress protein signature 615 637 IPR006015 -
Cmo14g01623 643 PANTHER - 20 424 - -
Cmo14g01623 643 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 484 639 - -
Cmo14g01623 643 Gene3D HUPs 479 643 IPR014729 -
Cmo14g01623 643 Pfam Plant protein of unknown function 43 413 IPR004158 -
Cmo14g01623 643 PANTHER PROTEIN, PUTATIVE (DUF247)-RELATED-RELATED 20 424 IPR004158 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01623 - - - csv:101214850 574.704
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00267 Cmo-Chr6:1356095 Cmo14g01623 Cmo-Chr14:12893415 1.26E-51 dispersed
Cmo11g01923 Cmo-Chr11:13334891 Cmo14g01623 Cmo-Chr14:12893415 9.91E-16 dispersed
Cmo14g00101 Cmo-Chr14:466237 Cmo14g01623 Cmo-Chr14:12893415 6.02E-48 dispersed
Cmo14g01623 Cmo-Chr14:12893415 Cmo15g00789 Cmo-Chr15:3873600 1.85E-44 dispersed
Cmo18g01020 Cmo-Chr18:11027572 Cmo14g01623 Cmo-Chr14:12893415 1.85E-22 dispersed
Cmo14g01623 Cmo-Chr14:12893415 Cmo06g01558 Cmo-Chr6:10968856 3.56E-82 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g76 . Blo12g00084 Bda03g01174 . Bpe04g01113 Bpe14g01101 . . . . . Cma14g01591 Car06g01325 Car14g01405 Sed12g0777 Cpe08g00153 Cpe03g01331 Bhi01g01084 Tan10g1071 Cmetu06g1226 . Hepe05g1388 . Lcy11g1343 . . . . . . . Cone14ag0723 Cone15ag0732 . . Lsi05g01588 . . Cme06g00783 Blo02g00478 Blo07g00150 Bda11g00504 Bda13g00215 . Bpe13g00693 . Bma06g01471 . . Cmo14g01623 . . . . . . . . . . . . . Cla05g00701 Cam05g0767 Cec05g0776 Cco05g0769 Clacu05g0757 Cmu05g0723 Cre05g0797 . Csa03g01513 Chy06g00750 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011383 0 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01623 Cmo_Chr14 FPKM 18.187944 23.04414 4.261632 2.805846 4.205464 0.0 2.835195 4.973135 9.444782 7.737202