Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01636 ATGTCTACGGCGAGTTCGAGCTCTATAAGGAAAGGCGGCGAAGCTGTTCCCGACCAGTTTCCGATCGGGCTTCGTGTTCTTGTTGTGGATGATGATCCGACCTGTCTGATGATCTTGGAGAAGATGCTTCGTATTTGCCGCTATGATGTAACGAATTGTAGTCGAGCCGAGGATGCATTGTCTCTTCTCAGACGATACAAAAACGGGTTCGATATCGTTTTAAGCGATGTCCACATGCCAGACATGGATGGATTCAAACTTCTGGAATACATAGGATTAGAAATGGACTTGCCTGTAATCATGATGTCGGTGGATGACGGGAAAAACGTCGTCATGAAGGGAGTAACTCATGGTGCTTGTGACTATTTAATAAAACCTGTTCGAATTGAAGCGTTAAAGAACATATGGCAGCACGTTGTTCGTAAGCGGAAGAATGAATGGAAAGACTTGGAGCAATCGGGATGTGTCGATGATGTCGTCGATCGACAGCAGAAAACTAATGAAGATGCAGATTATTCATCGTCTGCTAATGAAGGGAGTTGGAAGAACTCAAAGAGGAGGAAGGAGGACGTAGAAGACGTCGAGGAGAGGGACGATTCATCGACCTTAAAGAAACCGAGGGTCGTTTGGTCCGTTGAGCTCCATCAACAGTTTATGGCTGCTGTTAATCAACTAGGAATTGATAAGGCTGTTCCGAAGAAGATACTCGAGTTGATGAATGTCCCTGGACTCACTAGAGAAAACGTTGCCAGCCACCTTCAGAAATATCGTTTGTACCTGAGAAGAGTAAGTGGAATCACACAACACCAGAGTAATTTAAACAACACGTTCATGAGTGCCCAAGACGTGTTTGGCTCGTCGTTGAACGGTCTTGATCTTCGAACTCTCGCTGCTGCTGGTCAGCTCCAGCCACAAAGCCTTGCTACACTTCAAGCAGCTGGATTCGGTAGGTCTACAGTGAAATCGAGCATGCCTATACCTCTTGTAGATCAAAGGAACCACATTTTTAGCTTCGAAAATCCGAAGTTGAGATTCGGTGACGAGCAACAGCGACATTTGAATGGTAGTAAATCGATGAATCTACTTCATGGAATCCCAACAACGATGGAGCCGAAACAGCTTGCTAATCTGCAGCAATCGTCGCAATCTCATGGGAACATGACAATGCAAGTTAGTACACGAGGAAGCCAATCTAGCTCTCAACCACAAGCTAGAGCACAGATTCTCAAAGAAAGTACCCCAACGAGCGTAACGAGGCTTCCACCGACATCGCAGCAGCCAATTTTGCCGAATGGAAAGGCCAGTGGAGGGTACAGTGTAGTTTCACCAGCTGCAACAATGTTAAATTTCCCCGAATTGCCTGGTAATAGTTTTCCTCTTCAAAGTACCCCAGGAATGTCGAGTGTCGTACCAAAGGGAAGATTCCCCGATGACGTTAACTCGAACATTAAACGATCGGAAGGTTTTGTGCCAAACTATGATATGTTTAGGGACCTGCATCCTCAGAAGCCCCATGATTGGGACTTGCAACATGTTGGTGTGACGTTTGATACGTCTCAAGGTAGTCTCGACGTTCCACCCTCAGCTTTCGCTCAACAAGGGTATGCTGCCTCTAGCCAACAAAATGGACAAAACAGGAACACATCTACCGCAGGCAAGGCCATGTTCTTGTTGGACGAACGAAGTGACAATGGGAACGAACAAAGTATGAGCCAACAACTCGACCCTCGTTTCGTCGATGGTTCAGTGAGAGTCAAAGCTGAAAGAGCTCCTCATACGAGCAGTCAGACCGACCTTTTCTCTGAACACTTCGGTCCAGAGGACCTAATGAGTGCAGTTCTTAAGCAGCAACAGGGAAGCATTGCAGCAGCTGAAAGTGAACTGGAATGGATGTTTCATCATAACACTCCTGTTTAG 1917 46.32 MSTASSSSIRKGGEAVPDQFPIGLRVLVVDDDPTCLMILEKMLRICRYDVTNCSRAEDALSLLRRYKNGFDIVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGCVDDVVDRQQKTNEDADYSSSANEGSWKNSKRRKEDVEDVEERDDSSTLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRVSGITQHQSNLNNTFMSAQDVFGSSLNGLDLRTLAAAGQLQPQSLATLQAAGFGRSTVKSSMPIPLVDQRNHIFSFENPKLRFGDEQQRHLNGSKSMNLLHGIPTTMEPKQLANLQQSSQSHGNMTMQVSTRGSQSSSQPQARAQILKESTPTSVTRLPPTSQQPILPNGKASGGYSVVSPAATMLNFPELPGNSFPLQSTPGMSSVVPKGRFPDDVNSNIKRSEGFVPNYDMFRDLHPQKPHDWDLQHVGVTFDTSQGSLDVPPSAFAQQGYAASSQQNGQNRNTSTAGKAMFLLDERSDNGNEQSMSQQLDPRFVDGSVRVKAERAPHTSSQTDLFSEHFGPEDLMSAVLKQQQGSIAAAESELEWMFHHNTPV 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12981700 12985968 - CmoCh14G016360.1 Cmo14g01636 396902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01636 638 SMART REC_2 24 136 IPR001789 GO:0000160
Cmo14g01636 638 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 611 IPR045279 GO:0009736
Cmo14g01636 638 SUPERFAMILY Homeodomain-like 202 262 IPR009057 -
Cmo14g01636 638 SUPERFAMILY CheY-like 23 148 IPR011006 -
Cmo14g01636 638 MobiDBLite consensus disorder prediction 181 199 - -
Cmo14g01636 638 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 261 IPR017930 -
Cmo14g01636 638 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 205 258 IPR006447 GO:0003677
Cmo14g01636 638 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 611 - -
Cmo14g01636 638 MobiDBLite consensus disorder prediction 381 432 - -
Cmo14g01636 638 CDD REC_typeB_ARR-like 26 140 - -
Cmo14g01636 638 MobiDBLite consensus disorder prediction 158 199 - -
Cmo14g01636 638 Gene3D - 24 155 - -
Cmo14g01636 638 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Cmo14g01636 638 PIRSF RR_ARR_type-B 6 630 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cmo14g01636 638 Gene3D - 202 264 - -
Cmo14g01636 638 Pfam Myb-like DNA-binding domain 207 257 IPR001005 -
Cmo14g01636 638 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo14g01636 Cmo17g00339 CCT
Cmo08g01225 Cmo14g01636 CCT
Cmo14g01636 Cmo17g00339 ECH
Cmo08g01225 Cmo14g01636 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00902 Cmo-Chr8:5871249 Cmo14g01636 Cmo-Chr14:12981700 3.98E-30 dispersed
Cmo09g00426 Cmo-Chr9:1898549 Cmo14g01636 Cmo-Chr14:12981700 3.29E-107 dispersed
Cmo11g00476 Cmo-Chr11:2328507 Cmo14g01636 Cmo-Chr14:12981700 1.48E-102 dispersed
Cmo12g01197 Cmo-Chr12:10782304 Cmo14g01636 Cmo-Chr14:12981700 1.54E-94 dispersed
Cmo18g01241 Cmo-Chr18:12233270 Cmo14g01636 Cmo-Chr14:12981700 8.85E-49 dispersed
Cmo14g01636 Cmo-Chr14:12981700 Cmo17g00339 Cmo-Chr17:2056494 0 wgd
Cmo14g01636 Cmo-Chr14:12981700 Cmo06g01548 Cmo-Chr6:10900168 0 wgd
Cmo14g01636 Cmo-Chr14:12981700 Cmo08g01225 Cmo-Chr8:7770459 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11042 PF00072 Response_reg 3.90E-22 CL0304 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01636 - K14491 csv:101209013 1095.11