Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo14g01636 | ATGTCTACGGCGAGTTCGAGCTCTATAAGGAAAGGCGGCGAAGCTGTTCCCGACCAGTTTCCGATCGGGCTTCGTGTTCTTGTTGTGGATGATGATCCGACCTGTCTGATGATCTTGGAGAAGATGCTTCGTATTTGCCGCTATGATGTAACGAATTGTAGTCGAGCCGAGGATGCATTGTCTCTTCTCAGACGATACAAAAACGGGTTCGATATCGTTTTAAGCGATGTCCACATGCCAGACATGGATGGATTCAAACTTCTGGAATACATAGGATTAGAAATGGACTTGCCTGTAATCATGATGTCGGTGGATGACGGGAAAAACGTCGTCATGAAGGGAGTAACTCATGGTGCTTGTGACTATTTAATAAAACCTGTTCGAATTGAAGCGTTAAAGAACATATGGCAGCACGTTGTTCGTAAGCGGAAGAATGAATGGAAAGACTTGGAGCAATCGGGATGTGTCGATGATGTCGTCGATCGACAGCAGAAAACTAATGAAGATGCAGATTATTCATCGTCTGCTAATGAAGGGAGTTGGAAGAACTCAAAGAGGAGGAAGGAGGACGTAGAAGACGTCGAGGAGAGGGACGATTCATCGACCTTAAAGAAACCGAGGGTCGTTTGGTCCGTTGAGCTCCATCAACAGTTTATGGCTGCTGTTAATCAACTAGGAATTGATAAGGCTGTTCCGAAGAAGATACTCGAGTTGATGAATGTCCCTGGACTCACTAGAGAAAACGTTGCCAGCCACCTTCAGAAATATCGTTTGTACCTGAGAAGAGTAAGTGGAATCACACAACACCAGAGTAATTTAAACAACACGTTCATGAGTGCCCAAGACGTGTTTGGCTCGTCGTTGAACGGTCTTGATCTTCGAACTCTCGCTGCTGCTGGTCAGCTCCAGCCACAAAGCCTTGCTACACTTCAAGCAGCTGGATTCGGTAGGTCTACAGTGAAATCGAGCATGCCTATACCTCTTGTAGATCAAAGGAACCACATTTTTAGCTTCGAAAATCCGAAGTTGAGATTCGGTGACGAGCAACAGCGACATTTGAATGGTAGTAAATCGATGAATCTACTTCATGGAATCCCAACAACGATGGAGCCGAAACAGCTTGCTAATCTGCAGCAATCGTCGCAATCTCATGGGAACATGACAATGCAAGTTAGTACACGAGGAAGCCAATCTAGCTCTCAACCACAAGCTAGAGCACAGATTCTCAAAGAAAGTACCCCAACGAGCGTAACGAGGCTTCCACCGACATCGCAGCAGCCAATTTTGCCGAATGGAAAGGCCAGTGGAGGGTACAGTGTAGTTTCACCAGCTGCAACAATGTTAAATTTCCCCGAATTGCCTGGTAATAGTTTTCCTCTTCAAAGTACCCCAGGAATGTCGAGTGTCGTACCAAAGGGAAGATTCCCCGATGACGTTAACTCGAACATTAAACGATCGGAAGGTTTTGTGCCAAACTATGATATGTTTAGGGACCTGCATCCTCAGAAGCCCCATGATTGGGACTTGCAACATGTTGGTGTGACGTTTGATACGTCTCAAGGTAGTCTCGACGTTCCACCCTCAGCTTTCGCTCAACAAGGGTATGCTGCCTCTAGCCAACAAAATGGACAAAACAGGAACACATCTACCGCAGGCAAGGCCATGTTCTTGTTGGACGAACGAAGTGACAATGGGAACGAACAAAGTATGAGCCAACAACTCGACCCTCGTTTCGTCGATGGTTCAGTGAGAGTCAAAGCTGAAAGAGCTCCTCATACGAGCAGTCAGACCGACCTTTTCTCTGAACACTTCGGTCCAGAGGACCTAATGAGTGCAGTTCTTAAGCAGCAACAGGGAAGCATTGCAGCAGCTGAAAGTGAACTGGAATGGATGTTTCATCATAACACTCCTGTTTAG | 1917 | 46.32 | MSTASSSSIRKGGEAVPDQFPIGLRVLVVDDDPTCLMILEKMLRICRYDVTNCSRAEDALSLLRRYKNGFDIVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGCVDDVVDRQQKTNEDADYSSSANEGSWKNSKRRKEDVEDVEERDDSSTLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRVSGITQHQSNLNNTFMSAQDVFGSSLNGLDLRTLAAAGQLQPQSLATLQAAGFGRSTVKSSMPIPLVDQRNHIFSFENPKLRFGDEQQRHLNGSKSMNLLHGIPTTMEPKQLANLQQSSQSHGNMTMQVSTRGSQSSSQPQARAQILKESTPTSVTRLPPTSQQPILPNGKASGGYSVVSPAATMLNFPELPGNSFPLQSTPGMSSVVPKGRFPDDVNSNIKRSEGFVPNYDMFRDLHPQKPHDWDLQHVGVTFDTSQGSLDVPPSAFAQQGYAASSQQNGQNRNTSTAGKAMFLLDERSDNGNEQSMSQQLDPRFVDGSVRVKAERAPHTSSQTDLFSEHFGPEDLMSAVLKQQQGSIAAAESELEWMFHHNTPV | 638 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 12981700 | 12985968 | - | CmoCh14G016360.1 | Cmo14g01636 | 396902 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo14g01636 | 638 | SMART | REC_2 | 24 | 136 | IPR001789 | GO:0000160 | |
Cmo14g01636 | 638 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 1 | 611 | IPR045279 | GO:0009736 | |
Cmo14g01636 | 638 | SUPERFAMILY | Homeodomain-like | 202 | 262 | IPR009057 | - | |
Cmo14g01636 | 638 | SUPERFAMILY | CheY-like | 23 | 148 | IPR011006 | - | |
Cmo14g01636 | 638 | MobiDBLite | consensus disorder prediction | 181 | 199 | - | - | |
Cmo14g01636 | 638 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 204 | 261 | IPR017930 | - | |
Cmo14g01636 | 638 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 205 | 258 | IPR006447 | GO:0003677 | |
Cmo14g01636 | 638 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 1 | 611 | - | - | |
Cmo14g01636 | 638 | MobiDBLite | consensus disorder prediction | 381 | 432 | - | - | |
Cmo14g01636 | 638 | CDD | REC_typeB_ARR-like | 26 | 140 | - | - | |
Cmo14g01636 | 638 | MobiDBLite | consensus disorder prediction | 158 | 199 | - | - | |
Cmo14g01636 | 638 | Gene3D | - | 24 | 155 | - | - | |
Cmo14g01636 | 638 | Pfam | Response regulator receiver domain | 26 | 134 | IPR001789 | GO:0000160 | |
Cmo14g01636 | 638 | PIRSF | RR_ARR_type-B | 6 | 630 | IPR017053 | GO:0003677|GO:0003700|GO:0009736 | |
Cmo14g01636 | 638 | Gene3D | - | 202 | 264 | - | - | |
Cmo14g01636 | 638 | Pfam | Myb-like DNA-binding domain | 207 | 257 | IPR001005 | - | |
Cmo14g01636 | 638 | ProSiteProfiles | Response regulatory domain profile. | 25 | 140 | IPR001789 | GO:0000160 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo14g01636 | Cmo17g00339 | CCT | |
Cmo08g01225 | Cmo14g01636 | CCT | |
Cmo14g01636 | Cmo17g00339 | ECH | |
Cmo08g01225 | Cmo14g01636 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g00902 | Cmo-Chr8:5871249 | Cmo14g01636 | Cmo-Chr14:12981700 | 3.98E-30 | dispersed | |
Cmo09g00426 | Cmo-Chr9:1898549 | Cmo14g01636 | Cmo-Chr14:12981700 | 3.29E-107 | dispersed | |
Cmo11g00476 | Cmo-Chr11:2328507 | Cmo14g01636 | Cmo-Chr14:12981700 | 1.48E-102 | dispersed | |
Cmo12g01197 | Cmo-Chr12:10782304 | Cmo14g01636 | Cmo-Chr14:12981700 | 1.54E-94 | dispersed | |
Cmo18g01241 | Cmo-Chr18:12233270 | Cmo14g01636 | Cmo-Chr14:12981700 | 8.85E-49 | dispersed | |
Cmo14g01636 | Cmo-Chr14:12981700 | Cmo17g00339 | Cmo-Chr17:2056494 | 0 | wgd | |
Cmo14g01636 | Cmo-Chr14:12981700 | Cmo06g01548 | Cmo-Chr6:10900168 | 0 | wgd | |
Cmo14g01636 | Cmo-Chr14:12981700 | Cmo08g01225 | Cmo-Chr8:7770459 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11042 | PF00072 | Response_reg | 3.90E-22 | CL0304 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo14g01636 | - | K14491 | csv:101209013 | 1095.11 |