Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01644 ATGAAGCTTTCACCATTTTTGTTCTCTTTTCTTCTGGCCCTTTCTGTATCTGCAAGCAATTTCTCGCCGGACACGCCTCTTGAATCTGCCGACGGTGGATTTGATTCTCTTGCGCCGGAGCCGTCCGGCGAATTTCCTTTGAGTGGACGGGGTGTTTTTAATGTAAATGATTATGGGGCTGTTGCTGATGGGAAGACGGAGAACAGCTTGGCGTTCATGGCGGCGTGGGAAGAAGCTTGTGCTTTCAAAGGAGACTCCATTTTCTTAATACCGGAGGGCACTTTCTTGGTCGCCGGAGTCACATTTTCCGGCCCCTGTTTCAATAACCTCTCGCCCAAAGTCCTCATTTTCGCCACTTTGATTGCTCCCACCAAACTCACCACCGACGTTTGGATCCACTTCCACTCCCTCCGCCACCTCCTCCTCACCGGCCTCGACGGATCCGCCGTTCTCAACGGCCAAGGAGCCCAAACCTGGTCCTTCGGCTCCGCCTGCCGCCGCCGCATGACTTGCCCCATTTTCACCACGTCTTTAAAGCTAACAGATGTGTCACATGCGATAGTGAAAGACATAAGCCTAGTAGATAGCAAGGGCTTTCACGTAGCCATGCATGGGTGCGACCATATTCATCTTTATGGGTTTAATATTACGGCGCCTTGGAATAGTCAAAACACTGATGGCATCCATATTAGTAACTCCACCAATATCAACGTTGCCAATTCCCACATCGGAGTTGGTGACGATTGTGTTTCCATTGGACCTGGTAGCTTCGATGTATTAGTTTCGAATATTAGATGTGGCCCAGGTCATGGAATCAGCGTTGGGAGCCTAGGGAGGTACAAGAACGAGATGGATGTGATAGGAATAAGAGTGGAGAATTGTACCATAAGTGATACTCAAAATGGAGTGAGGGTAAAGACATGGCCGGGAAATTATTCGAGTAATGCTGCTCATTTGACGTTTCAAAACATTGTGATGAACAATGTCTCAAATCCCATTATCATAGATCAACGTTATTGTCCTAACCATTCTTGTGACATGAAAGAGTCATCAAGTGTGAAGCTGAGTGAGATGAACATGAGAAACATCAGTGGAACTTACAACACAAAGTTCGCAACTCTTTGGAACCTTGTCCCGCGCCACCGTCCCCATTTCTACCCATCTTCCGCCGCACCTTCCGCTGCCGCCGCCGCCTTCCACTGTCGTCGGATCTATAGGTTGTTTTTCCACCTGATTGCCGAGTCCTTGATCTCTTCCGCTTAG 1263 48.69 MKLSPFLFSFLLALSVSASNFSPDTPLESADGGFDSLAPEPSGEFPLSGRGVFNVNDYGAVADGKTENSLAFMAAWEEACAFKGDSIFLIPEGTFLVAGVTFSGPCFNNLSPKVLIFATLIAPTKLTTDVWIHFHSLRHLLLTGLDGSAVLNGQGAQTWSFGSACRRRMTCPIFTTSLKLTDVSHAIVKDISLVDSKGFHVAMHGCDHIHLYGFNITAPWNSQNTDGIHISNSTNINVANSHIGVGDDCVSIGPGSFDVLVSNIRCGPGHGISVGSLGRYKNEMDVIGIRVENCTISDTQNGVRVKTWPGNYSSNAAHLTFQNIVMNNVSNPIIIDQRYCPNHSCDMKESSSVKLSEMNMRNISGTYNTKFATLWNLVPRHRPHFYPSSAAPSAAAAAFHCRRIYRLFFHLIAESLISSA 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13019985 13023980 - CmoCh14G016440.1 Cmo14g01644 396910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01644 420 PANTHER - 39 372 - -
Cmo14g01644 420 SMART pbh1 256 276 IPR006626 -
Cmo14g01644 420 SMART pbh1 233 254 IPR006626 -
Cmo14g01644 420 SMART pbh1 206 232 IPR006626 -
Cmo14g01644 420 SMART pbh1 316 337 IPR006626 -
Cmo14g01644 420 SMART pbh1 286 307 IPR006626 -
Cmo14g01644 420 Pfam Glycosyl hydrolases family 28 84 370 IPR000743 GO:0004650|GO:0005975
Cmo14g01644 420 ProSitePatterns Polygalacturonase active site. 263 276 IPR000743 GO:0004650|GO:0005975
Cmo14g01644 420 PANTHER EXOPOLYGALACTURONASE-LIKE 39 372 - -
Cmo14g01644 420 SUPERFAMILY Pectin lyase-like 47 369 IPR011050 -
Cmo14g01644 420 Gene3D - 47 380 IPR012334 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01644 K01213 E3.2.1.67; galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67] - csv:101213162 487.263
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01644 Cmo-Chr14:13019985 Cmo17g01042 Cmo-Chr17:8834418 3.05E-88 dispersed
Cmo14g01644 Cmo-Chr14:13019985 Cmo14g01646 Cmo-Chr14:13024898 9.90E-83 proximal
Cmo14g01644 Cmo-Chr14:13019985 Cmo06g01536 Cmo-Chr6:10864516 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g149 . . . . . Bpe14g01113 . . . . Cma06g01540 Cma14g01608 . Car14g01427 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo14g01644 . . . . . . . . . . . . . Cla05g00673 . . Cco05g0746 . . . . . Chy06g00728 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013780 0 1 0 0 0 1 2 1 1 1 0 1 1 1 0 2 1 0 1 1 0 1 1 1 1 1 2 0 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01644 Cmo_Chr14 FPKM 9.088708 9.582655 14.652913 17.034883 12.218764 11.993682 11.85378 15.034154 15.308514 14.460392