Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01648 ATGTCAAATGATGACGATGGAGGGAAGAACAAGAAGGCCGCCCTTATCGGCGTGTCTTCATTGTTTCTCGTTGCCATGGTAGTTGCGGTGGCCGTCGGTGTCAACCGGAATGACCCTGATGAAATTAGTAGCACCAGTGGTGACGGAGGCACGACGGAGATCTCCACCTCCGTCAAAGCGATTAAAGCCCTTTGTCAACCCACTGACTACCAAGAAACTTGCATAGAATCGCTCTCGGGAGTCAACACGAGCGACCCACGTGAGCTAATCAAGGTTGGATTCCAATCTACCATCAATGAACTCAAATCTGCCATTGTAAAATCCGCCACCCTAAAAGAATTCGCCTCCGATCCCAAGGCCAAACCAGCACTCGACGTTTGTAACGAGGTTGTGGAGTACGCAATTGACGATCTCATAATGTCGTTTGATAGAATCACTGACAATTTCAATATCAACAAAATTACTGATTACGTCGAGGATCTTAAGGTTTGGCTTAGTGCCACGTTGACATTGCAAGACACTTGCGTGGATGCATTCGATAATGTTACCGGCGATACAGGTGACAAAATGAGGCAATTATTGAAGACGTCGAAGGAAATGACCGCCAATGGACTTGGAATGGTGAGTGAGGTTACTTCCATTATGTCCTCTTTTGGGATGCGGTTGGCTGGACGACGATTGTTGGAGGAGGAATCTAATAAAGAGGAGGAAGAACCATCGTGGATCAACGACCGGCGCGGGCTACTCCAAGCCACTCCGAAAACCATCCAGCCCAATGTTGTGGTAGCTAAAGACGGAAGTGGGAAGTACAAGACGGTGAATGAAGCATTATTTGATATCCCGAAAAAAAGCAATAAAACATTTGTGATTTATGTGAAGGAAGGAGTTTATGAAGAGCAGGTGATGATGAACAAAAGTATGACGTGGGTGATGATGATTGGAGACGGCCCGAATAAGACCAAGATTACCTCCAACAAGAACTTCGCCGATGGAACACCCACATTCAAAACCGCTACCGTTGCGGTGGTTGGAACCAACTTCATTGCCAAGGACATGTGGTTCGAGAACTCGGCTGGACCAGAAAAACATCAAGCAGTGGCACTCCGAGTTCAATCCGACATGTCAATCTTTTACAATTGTCAAATGGACGGTTACCAAGATACACTCTACACTCACACCCATCGTCAATTCTATCGAGACTGCACCATCACTGGAACCATCGACTTCATCTTCGGTAATGCGGCCGTCGTCTTCCAAAACTGTAAAATTTTCGTGAGAAAACCATTGCCGAATCAACAATGCATCGTCACCGCTCAAGGCCGAAGCCAACGGAAGGAGCCCACCGCCATAATCTTACAGAACTGTCTCATCTCCTCCGCCCCCGACTACTTCCCTGTCCGCCACACCTACAAGGCTTACCTTGGCCGCCCATGGAAGCAATACTCAAGAACCATCATTTTGCAATGCAAAATCGACGACTTGATCCAGCCTGAAGGGTGGCTTCCATGGACGGGCGATTTTGCTCTCAATACATTGTTTTACTCCGAGTACAATTGCAGGGGAGCTGGCTCAAAGAAGGACAATCGGGTCAAGTGGAGGGGAATTAAGGAGATTACTCCCGAGCACGCCATCGATTTCACCGCTGGGTTATTTATTCGAGGTAATCCATGGATTAAGCCCACTGGAGTTCCGTACAGTTCCGGCATGATGACATTGTCAGAACAAAAATTGACCATCCCTAGGGCTCCATTTGAAGTTAAAGCACCAACGTATCGAAGGCGGATTTCAAATTTTAATTTCAAGATGACTAGTAAAACCGGCGGTACTGGAGAGGCTGCTTTCCACATGCTGCAGCCGGAGCGTGACCTTCGGTTGAATTGGGAAGTCGACCTCGCTGAGAAGCTTGAAAGTTATTTGTTGCAGATTTGCACCGGTGAGTTTCAGTCCGGCGAAGATGAGAACCACAATTCTGTCAATTTTGCTGAAGGTGAGGCTGCTCTGCTTCTTCAAGGTTCGATTCAGGTGTACAGTCGGAAGGTTGAATACCTCTACTCATTGGTTCTGCGAGCTTTGGAGTTCCTCTCCGAAAAGAGCTTGGTTGAAGCCCATTCAACTGAGGCAAATTATTGCCTGGGATCGCAGCAGGATCATTTGGAAGGGACCTCAATCGAGGCTGAACAAGATGGTTCTAATGAAATTGCTGAAGATGAAAACGACCTATTTTGGGTTTCAGAGGATGTGCCAGTTGACACGAAGAATACTTTGGAGAGTACCAAAGAAGATGCTTGGTTAAATCAAACTGTAAAGCCTCCAGAAAATTTAGTCGTTCTTGAAGGTGATTGCTTGGATGCATCTGGTGACAATGGTGAACTAGATTCATACTTGTTGGCCTCCACTAGTGATATTTTCCAAGACTTCGTTCTCTTAGATTCATGTGATGCTGAGGCAGTTCAAGATTTTTTGAATGGTGGTAATAAGTTTGGCCAAAGCCATAATGGTGGATTCAGAGGCAGCTCAACCCACAGGGGTTTTCAGTCTCCCTCTAGACGTTCTGGTGGAAGTATGCAGAAATCATCAGTAGGAAAGACTCAGGGTGCTAATGTTGCTCGGACACCGTTTTCCAATCATTGCTTCGTGTCTGATCCTCCATCTTGTGATAATTTTGCCAATGAAAATCATGAATTTGACATGGATGCTGGGAATCCAGAACCAGATGACTCAAATGGTTCTGAAGACGATTATGATCCTTGGAAGCCTTTGAATCCTCATGAGCCAGGAAATTTAAAAATAAAACCATTTAGAAAAGTAAAAGCTTTTAAAAAGAATTATGTCAATTCTGGTAAGCATGAGTCTGTAGCTGCTTTGTTTCCACTAGCTAAATTACAAGGCCCAGTTAGCCCAGAGTTCGCGAAGCTTTGGGAAGAGCAGCACCAAGCCTTTGAAACGCATAGCGACTCCAATTCTGCTTTATTATATGAAAAGCTGCGAAATTCACTTATCAATGAAGATAGAAGTTGTGATTCCCCTTATGATGTGGAAGATGACAATATTGATTATGGTTTCGAAGATGTAATGCCTGATATCAATCCGCCAGATATGGATGATCCCTGTAATCATTATATGGACGAGTCTACGTGGTTAGGGAGTGAAAAGCATGATGCGGCTGCCCATTTTGATAAAGGTGAAACATATGAACCTGAATTTCCCTATTCGCAGTCAAGTCAAGAACATTTTTGTCCTTCTCATCTTGACACACTCCTTGCAAGCATTGCTGAGAATCCTACTGAAATGGCCACTCGAGTCTCTACGTGGAAACAGAATATTGAACACAATTTGGAAGAGCAAGACAAACGCCTTCCATTTGATATTCATGAATATTGCAAAGCGATTCGTGAAAAATTATCTGGTGAAGCTGACAAAGGCGGTGTAATTTCTTTCTCTGATGTTGTTGAAGGGCAGGAGAAGTACGTTGTATCACGAAGTTTTACTGCTGTTCTTCAATTGGTGAACAATGAAGATGTGGAGCTTGAAGAGGACGAGGTTGATGGGGAGTCGATTGTCTATACTTCTGCGAACCCGTTCCATGTTCGGCTTATTCGCCAAGACAAATGGGCGGATGAAACTCGGCATCAAACCTCAAGAAAGAGGTCCACATCTCCAGATAAGGTTGAAAATGGTAGGGATGACATTGTTAGGAATATAAACCACAAATCATCACACATGGGTAAAACTCTTGAGAAATCTAGGGTGATGAGAGAATTGTCACGACAGAATTGCAAACTTCCTGTGAAACTGGGGAAGGTTGGTGGCATAAAATGCACTCCTGAAGGCAAGAGGCCAGTTGACTGA 3849 44.84 MSNDDDGGKNKKAALIGVSSLFLVAMVVAVAVGVNRNDPDEISSTSGDGGTTEISTSVKAIKALCQPTDYQETCIESLSGVNTSDPRELIKVGFQSTINELKSAIVKSATLKEFASDPKAKPALDVCNEVVEYAIDDLIMSFDRITDNFNINKITDYVEDLKVWLSATLTLQDTCVDAFDNVTGDTGDKMRQLLKTSKEMTANGLGMVSEVTSIMSSFGMRLAGRRLLEEESNKEEEEPSWINDRRGLLQATPKTIQPNVVVAKDGSGKYKTVNEALFDIPKKSNKTFVIYVKEGVYEEQVMMNKSMTWVMMIGDGPNKTKITSNKNFADGTPTFKTATVAVVGTNFIAKDMWFENSAGPEKHQAVALRVQSDMSIFYNCQMDGYQDTLYTHTHRQFYRDCTITGTIDFIFGNAAVVFQNCKIFVRKPLPNQQCIVTAQGRSQRKEPTAIILQNCLISSAPDYFPVRHTYKAYLGRPWKQYSRTIILQCKIDDLIQPEGWLPWTGDFALNTLFYSEYNCRGAGSKKDNRVKWRGIKEITPEHAIDFTAGLFIRGNPWIKPTGVPYSSGMMTLSEQKLTIPRAPFEVKAPTYRRRISNFNFKMTSKTGGTGEAAFHMLQPERDLRLNWEVDLAEKLESYLLQICTGEFQSGEDENHNSVNFAEGEAALLLQGSIQVYSRKVEYLYSLVLRALEFLSEKSLVEAHSTEANYCLGSQQDHLEGTSIEAEQDGSNEIAEDENDLFWVSEDVPVDTKNTLESTKEDAWLNQTVKPPENLVVLEGDCLDASGDNGELDSYLLASTSDIFQDFVLLDSCDAEAVQDFLNGGNKFGQSHNGGFRGSSTHRGFQSPSRRSGGSMQKSSVGKTQGANVARTPFSNHCFVSDPPSCDNFANENHEFDMDAGNPEPDDSNGSEDDYDPWKPLNPHEPGNLKIKPFRKVKAFKKNYVNSGKHESVAALFPLAKLQGPVSPEFAKLWEEQHQAFETHSDSNSALLYEKLRNSLINEDRSCDSPYDVEDDNIDYGFEDVMPDINPPDMDDPCNHYMDESTWLGSEKHDAAAHFDKGETYEPEFPYSQSSQEHFCPSHLDTLLASIAENPTEMATRVSTWKQNIEHNLEEQDKRLPFDIHEYCKAIREKLSGEADKGGVISFSDVVEGQEKYVVSRSFTAVLQLVNNEDVELEEDEVDGESIVYTSANPFHVRLIRQDKWADETRHQTSRKRSTSPDKVENGRDDIVRNINHKSSHMGKTLEKSRVMRELSRQNCKLPVKLGKVGGIKCTPEGKRPVD 1282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13035160 13041555 + CmoCh14G016480.1 Cmo14g01648 396914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01648 1282 CDD PMEI-like_3 63 213 - -
Cmo14g01648 1282 MobiDBLite consensus disorder prediction 825 866 - -
Cmo14g01648 1282 Pfam Condensin II complex subunit CAP-H2 or CNDH2, N-terminal 614 706 IPR009378 -
Cmo14g01648 1282 PANTHER PECTINESTERASE 14 603 - -
Cmo14g01648 1282 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 211 IPR035513 -
Cmo14g01648 1282 Pfam Condensin II complex subunit CAP-H2 or CNDH2, mid domain 769 913 IPR031719 -
Cmo14g01648 1282 Gene3D - 253 569 IPR012334 -
Cmo14g01648 1282 MobiDBLite consensus disorder prediction 889 926 - -
Cmo14g01648 1282 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 211 IPR035513 -
Cmo14g01648 1282 SMART PMEI_2 56 207 IPR006501 GO:0004857
Cmo14g01648 1282 Pfam Pectinesterase 259 555 IPR000070 GO:0030599|GO:0042545
Cmo14g01648 1282 MobiDBLite consensus disorder prediction 1206 1228 - -
Cmo14g01648 1282 TIGRFAM PME_inhib: pectinesterase inhibitor domain 57 208 IPR006501 GO:0004857
Cmo14g01648 1282 Pfam Plant invertase/pectin methylesterase inhibitor 60 205 IPR006501 GO:0004857
Cmo14g01648 1282 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Cmo14g01648 1282 PANTHER PECTINESTERASE 14 603 - -
Cmo14g01648 1282 SUPERFAMILY Pectin lyase-like 256 568 IPR011050 -
Cmo14g01648 1282 Pfam Condensin II complex subunit CAP-H2 or CNDH2, C-term 916 1204 IPR031737 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo14g01648 Cmo17g00328 CCT
Cmo08g01213 Cmo14g01648 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01648 Cmo-Chr14:13035160 Cmo06g01513 Cmo-Chr6:10795720 0 dispersed
Cmo14g01648 Cmo-Chr14:13035160 Cmo17g00328 Cmo-Chr17:1985349 0 wgd
Cmo14g01648 Cmo-Chr14:13035160 Cmo06g01512 Cmo-Chr6:10790587 0 wgd
Cmo14g01648 Cmo-Chr14:13035160 Cmo08g01213 Cmo-Chr8:7701057 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01648 K01051 - csv:101212686 866.3