Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01653 ATGTCGAACACGTCGAAGGTTATGTCACAATCGCATTTTGATGTTAGTGGACTTGCAATTATGCAACACTCACTTCTTAGTAGCAACTGGGTGCTTATTATAAACGCAAATCTTTGGATACAGGACGGAAGTTCATTTTGTGTTCTTCATGAGACCGCCATGTCCATAAGCTGCATGGCTACTCCTTTCTCCTCTTCTCCCACTCAATGCCCACCAGATGTTTGTGAAAATGCGCGACTGGACCTGAACTCCATAAGGGGTCTTGTTGTCTCTATCAATCAGTATATTCATGAATTCTTGAGCAATGCTGAGGCTAGAACTGCTGTCAAATTGAGATGTATATCCAAGCTAAGAAACCATAAACATGAGTATTTTGAATTCTTGGAACAATCCATCATTTCAAATCTTTACTGGGGTGTTGAGAACATTGAAGATGCAGTTCAAACGAGCAATTCTGAAGTGAGGGCCACTAAGCTTCAAACTGCGGAACAAATGCTTCAGGTCCCAGCACTGCTTGACGAGCATGGTGAGACGTCAGGAATGGATAATCGTTATTTAGTTTGCTGCTCTTACTTCTATCTTTCCCTGGTCAAGAACCTTCAAGGGGACGAGTGGCAGGTTGCTCTGCACTTCCTTCAATCCCTGCTGGTTTCTCCAAGATTGGTTCTCACCGAGTTTGCTCAAGAATTTTGCTACAGCCTTCTTCTTTCTTTTGCTACATGTTCGAGGCAAGAAAATTGTACAAGTATGAGGTCCAATTCTTGTGTAGAATTTGGCGAGGGTGACTTTGGTGAATCAACTGTAAGACAGGTAGCTAGAAAATACAAGGACTGGCTAATGTATTATCAGGTTATGTCATACGGAGAGACTCACCAGTGGCAGCAGCAGGGAAGCAGCAGTATGTTTTCTTCTGAAGATGGATCACATTCCTTGCACGGCTCATTTTCCAGGATTGAAGATTCAAAGGCAATTGATTGCGGGCTTGCCCAGCCAACTGTTTCCCATTATGACATTATATCGCCACTTGATCATATTGATGTATTTCAAGATAAAACAAACACGTCGCAAGATGTTCCACGATGTGAAGAATTGGGGAATTCCGAAAAAAATTTGGGTCTCGTCCCAGAACCTCAATTAAATGATGGGGGATTCTGGAGAGATTCTAGTACCAAATTCATTGGAGACCTGTTGAAGGATTCCCATCTCGGTTCACCAACTTCATTATTCTCATCAATGAACGATTCCGAAAGTGACAGTGATTTTGAGGCAGGTATGAACTACACTAATCACTCTAAGAGAAGCGCACAAGAAGACATGCCGGAAAACTTTTATCAGAAGCTGCGTTATGCTCGCTCCAAATCCGACACAGAACAGAGTTTGATATCATTGACCAGTGCTTCTCTAAGTAGGGTGCAGGAACATTACATTGAAGCAAACATGATGAAATCCATTTCAAATAAATTCAATGATTACAAGTTATGTAGCGAAGAACAAAAGGACTTAGAACCTCAGATCCTCCAAAATTGTCTTGAAGATAGTGAACCAAAAGAATTGTTAGTAAACCCATGCAAATTACAGACTTTTGATAGTGCTTTACCTTTATCGCTCGGTCAGGGTTCGACCTGTCAGATTAGTAAGAAGAATAGTGCTAAAGGGCAATTATATCACGCAAATAGCAGAAAAGATTCAAAGAGTGAAATATTGGGACTTGTAGAGAAAGCGATTTCAAGATTATGTTTCTCAGAAGGATTAGGAAACTACGATGACGAGTATGCTGTGGAAGTTTCAACGGTTTACAAAATGTTGAATAACAAAACGGGAGTACAATACACCATGTTAAAGGATTTGATAATGGATCAATTGGTGACAGGCATTTCAACTTCTAAAGAGGAAAAGGTTATAAGGGCATCAGTTTCTCTGCTTACAACTATAATTTCTGAGAACAATTCGGTTATAGAAGATATCAAGAAGAAGGGTTTACAGTTATGTGATTTGGCTACTGCTCTAAAACAGAATGTCCATGAGGCTGCAATCCTTATCTACCTCATCAGTCCATCCCCAAGGGAAATCAAGTCCTTAGAGCTTCTACCTGTTCTGGTGGAGATCATAAGCACCTCAAGATGTTATAATACTTGGTCACCACCATTTATGTTGACTCCTCCTGCAGCATCAATGATGATCATTGAAGTAATGGTAACTGCGTTTGACGAGGACACAAATAAGATGCATTTGGTAGAAATCAGCTCACCAAGTGTTCTTTGTGGGCTTCTAGAAGTTGCAAGAACCAACAATGTGGAAGGATTGGTGTCTCTAGGCAGTATTCTTGTAAAATGCATGCAACTTGATGGAGAGTGCAGAAGCTATATATCAAAATTCATCTCAGTGGCTCCATTTCTCTGTCTCTTACAAAGTGATAAGAAGGAAGCAGTACATATCACACTTCAAGTATTCAATGAAATCCTTCGTGTTCCTAGGTCTTCTGCCATTAGCTTGTTGCAAAGGATTAAGAATGAAGGGGGAAATGACATCATTCACATACTAATGCTTTGTGTCAATCATTTGCAAACTGAATATCAACTTCTGGCTGCAAATTTATTGATTCAATTACTTGTTCTGGACAACGGTTCCACAACGAGCTTCTTAAAAGAAGAGGCTGTACATGTCCTTCTCAGGTCAGTGGCATGCGAAGAAACCTCTGCTATGCAGCTGTTGTCTGCATCGATTTTGTCAACTCTTGGTGGAACGTTTGCTTGGACAGGAGAACCATACACAGTTGCATGGTTGCTTAAAAAAGTTGGTTTGAGTTCTGATCATCAGAACATGATCAAATCGTTCAATTGGCTAGACCAAAGCTTGCAGGATGCTGGCATGGACTCATGGTGCAGTGTGATGGCCAGAAACATCATCTGTATCGGGGAACCCGTCTTTCATGCTTTAGAAAAGGGTTTAAAGAGCAACATAAAGAAGGTTTCTAGGGACTCTTTGACAACAATTGCATGGCTTGGATGTGAGATTGCAAAGAGTCCAAGTAGCATTAGATGTTCTGCTTGTGAGATCTTACTCAGTAGAATTGAGCTGTTCTTGCATCCCGGAGTAGAACTCGAAGAAAGGCTTCTGGCATGTCTCTGCATCTTCAACTATACGTCTGGAAAAGGGATGCAAAACCTTACTAATTTCTCTGAAGGAGTTCGTGAGTCACTAAGACGTCTTTCACATATAACTTGGATGGCAGAAGAGTTGCATCAAGTAGCAGATTATCTTATGCCCAATAATTCACGAATTTCGTGCGTGCACACGCAAGTTCTAGAGCTGGGTTTCAACAGCAGTGGAGCTGTATGTGCCCTCATCTTTTACAAAGGTCTTCTTTTCGGTGGATACTCAGATGGTTCAATTAAGGTGTGGAACATCAAGGGACAATCGGCATCACTTCTATGGGACATAAAGAAACATAGAAAAGCAGTAACATGTTTTTCGCATTTTGAATCTGGGGAGAGTCTTCTAAGCGGATCTTCCGATAAAACTATTCGAGTCTGGAAAATGATCCAGGGAAGATTGGAGTGCATCGAAGTCATAGAGTCCAAGGAACAAATCCAACATTTAGGGGCATATGGACAAATAATCTTTGCAATTACACATGGCCATGGCTTGAAGGTGATTGATGCATCAAGAACAACAAAAGTTCTTTTCAAGAGTAAGAATTTGAAGTGCATGAAGGTGGTTCAAGGAAGAGTTTATGCAGGTTGCACCGATTCGAGCATACAGGAGTTTTCTGTGACCAACAAATGGGAACAAGAGATCAAGCCACCTTCTAAAAGTTGGATGATGATGCACCACAAGGCTATCAACTCACTTGCTGTGTACAAGGACTGGCTTTTTTGTGCTAGTTCAATAGTTCAAGGCTCGTTATTTCAGAACTGGAGAAGACATGAAAAGCCCAAAATGAATATTGTAACTGGTAAAGGAGATGTCGTGCAAGCGATGAGTGTCGTTGAAGATTTCGTGTACATAATCTGTAAATCTTCAGTGAGCAGCATTCAGATATGGTTGAGAAAGGCACAGCACAAAGTGGGGAGAGTTTCAGCTAGTAGCAGGATAACATGTCTGCTTACAGCCAATGACATGGTTCTTTGTGGCACAGAGACGGGCAAAATTAAGGGCTGGATCCCCATCTAG 4173 41.19 MSNTSKVMSQSHFDVSGLAIMQHSLLSSNWVLIINANLWIQDGSSFCVLHETAMSISCMATPFSSSPTQCPPDVCENARLDLNSIRGLVVSINQYIHEFLSNAEARTAVKLRCISKLRNHKHEYFEFLEQSIISNLYWGVENIEDAVQTSNSEVRATKLQTAEQMLQVPALLDEHGETSGMDNRYLVCCSYFYLSLVKNLQGDEWQVALHFLQSLLVSPRLVLTEFAQEFCYSLLLSFATCSRQENCTSMRSNSCVEFGEGDFGESTVRQVARKYKDWLMYYQVMSYGETHQWQQQGSSSMFSSEDGSHSLHGSFSRIEDSKAIDCGLAQPTVSHYDIISPLDHIDVFQDKTNTSQDVPRCEELGNSEKNLGLVPEPQLNDGGFWRDSSTKFIGDLLKDSHLGSPTSLFSSMNDSESDSDFEAGMNYTNHSKRSAQEDMPENFYQKLRYARSKSDTEQSLISLTSASLSRVQEHYIEANMMKSISNKFNDYKLCSEEQKDLEPQILQNCLEDSEPKELLVNPCKLQTFDSALPLSLGQGSTCQISKKNSAKGQLYHANSRKDSKSEILGLVEKAISRLCFSEGLGNYDDEYAVEVSTVYKMLNNKTGVQYTMLKDLIMDQLVTGISTSKEEKVIRASVSLLTTIISENNSVIEDIKKKGLQLCDLATALKQNVHEAAILIYLISPSPREIKSLELLPVLVEIISTSRCYNTWSPPFMLTPPAASMMIIEVMVTAFDEDTNKMHLVEISSPSVLCGLLEVARTNNVEGLVSLGSILVKCMQLDGECRSYISKFISVAPFLCLLQSDKKEAVHITLQVFNEILRVPRSSAISLLQRIKNEGGNDIIHILMLCVNHLQTEYQLLAANLLIQLLVLDNGSTTSFLKEEAVHVLLRSVACEETSAMQLLSASILSTLGGTFAWTGEPYTVAWLLKKVGLSSDHQNMIKSFNWLDQSLQDAGMDSWCSVMARNIICIGEPVFHALEKGLKSNIKKVSRDSLTTIAWLGCEIAKSPSSIRCSACEILLSRIELFLHPGVELEERLLACLCIFNYTSGKGMQNLTNFSEGVRESLRRLSHITWMAEELHQVADYLMPNNSRISCVHTQVLELGFNSSGAVCALIFYKGLLFGGYSDGSIKVWNIKGQSASLLWDIKKHRKAVTCFSHFESGESLLSGSSDKTIRVWKMIQGRLECIEVIESKEQIQHLGAYGQIIFAITHGHGLKVIDASRTTKVLFKSKNLKCMKVVQGRVYAGCTDSSIQEFSVTNKWEQEIKPPSKSWMMMHHKAINSLAVYKDWLFCASSIVQGSLFQNWRRHEKPKMNIVTGKGDVVQAMSVVEDFVYIICKSSVSSIQIWLRKAQHKVGRVSASSRITCLLTANDMVLCGTETGKIKGWIPI 1390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13063420 13073569 + CmoCh14G016530.1 Cmo14g01653 396919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01653 1390 Pfam WD domain, G-beta repeat 1146 1179 IPR001680 GO:0005515
Cmo14g01653 1390 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1147 1180 - -
Cmo14g01653 1390 PANTHER OS04G0584500 PROTEIN 64 1390 - -
Cmo14g01653 1390 SUPERFAMILY WD40 repeat-like 1100 1386 IPR036322 GO:0005515
Cmo14g01653 1390 SMART WD40_4 1140 1179 IPR001680 GO:0005515
Cmo14g01653 1390 SMART WD40_4 1095 1135 IPR001680 GO:0005515
Cmo14g01653 1390 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 64 1390 - -
Cmo14g01653 1390 Gene3D - 1090 1389 IPR015943 GO:0005515
Cmo14g01653 1390 ProSiteProfiles Trp-Asp (WD) repeats profile. 1147 1180 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01653 - - - csv:101205639 2318.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00631 Cmo-Chr11:3019891 Cmo14g01653 Cmo-Chr14:13063420 9.18E-51 dispersed
Cmo13g00480 Cmo-Chr13:5809256 Cmo14g01653 Cmo-Chr14:13063420 1.23E-27 dispersed
Cmo14g01653 Cmo-Chr14:13063420 Cmo10g01014 Cmo-Chr10:5283196 2.12E-08 dispersed
Cmo14g01653 Cmo-Chr14:13063420 Cmo18g00518 Cmo-Chr18:3771896 1.19E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g186 Blo01g00069 . . Bda08g00295 . . . Bma05g01030 . . . Cma14g01615 . Car14g01438 . . Cpe03g01357 . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00830 . . . . . Cmo14g01653 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009269 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01653 Cmo_Chr14 FPKM 0.624583 0.865548 3.887021 3.37742 1.512048 1.780713 1.534569 0.215156 0.163599 0.242271