Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01669 ATGAAAATGGGAGGCGGAGGAGCGACAGCGAGCGGCGGGACGTGCTTTGACGGGGAGCAGCCATTTGAAAATCGATTGGTAAAGCTCATGGCCCCGTCTAGAAAGTCCAGAAGTGTTAATAAGCGGTTATCTTCTGCTAATGAGGCCTTCTCAAGTAAATACGTGGAAGATGCTAGCAAAAGCAAGCAGAAGAAGAGGAAATTTGCTGACCTGTTAGGGCCTCAATGGAGCAAGGATGAGGTTGAGCAGTTCTATGAAGCATATCGTAAATACGGAAAAGATTGGAAGAAGGTAGCTGCTGCAGTAAGGAACCGTTCTACAGAAATGGTCGAGGCCCTTTTCACCATGAATAGGGCCTATTTATCACTTCCAGAGGGCACTGCTTCAGTTGTTGGGTTAATTGCAATGATGACTGATCACTACAGCGTACTGAGAGACAGTGAAAGTGAACAAGAAAGCAATGAGAATTCTGGAGCAAGAAGAAAACCTCAAAAGCGACTGCGTGGAAAGTCACAAAATAACAACTCTAAAGGATTGGATGCACATTTTGGAGATGCTTCACAATCACAGTCATTTCCAACAAATTATGGCTGCCTGTCATTGTTGAAGAAGAGGCGTTCTGGTATTAAACCTCATGCTGTTGGGAAACGAACTCCACGCATTCCTGTATCATATTCTTATGATAAAGATGGTAGAGAGAGGTTTTTTTCACCCTCCAGGCACAATAGCAAGCCAAGGGTTGATGATCCAAATGATGATGATGTTGCTCATGAGATAGCTTTAGTTTTAACAGAGGCTTCACAACGAGATGGTTCTCCACAACTTTCACAAACACCAAATCCAAAAATTGAAGGTCATGTTCTTTCACCTACCCGAAATGACAGGATGCAAAGTGAATCAGGCATGATGAATACGAAGTTTCGATGTAGTGAAATGGATGAAGGTGGTTGCGAATTAAGCTTAGGAAGCACTGGTGCTGATAATGCGGACTATGACCTGGGGAAAAATTCTCGTGAGATTCAGAGAAAGGGTAAAAGGTACCATGGAAAGAAGCCAGAAGTTGAAGAAAGTATGTACAACCACTTGGATGACATCAAGGAAGCTTGTAGTGGGACTGAAGAGGGACAAAAATCAGGCAGTTTGAGGGGAAAACTTGAAACTGCGGATTTGGATGTAAAATCTGTGAGATCCTCTTTTAAAGGTCCGAGGAAAAGAAGTAAGAAAGCTCTATTTGGAGATGAATGTTCAGCATTTGATGCACTGCAAACTTTAGCTGATTTGTCTCTAATGATGCCTGACGCAAATGCTGAGACTGAGCCTTCTGCAAAGGTTAAAGAGGAAAATCTTGATGTCATGCACAAGTCTAAAATAAAAGGGAATCATTCAGTTGCTGGAGCTGAAATTTCTGCTCTCAAAACATCTAAAAAGGTAAAAGCTTTTGGCAATAATGTTGGTCCTATTCTGGAATCTGAGAGAATTCAAGGATCCAATAACGGTAATCGAAAAAGGAAACTGAAGTCTTCTCCATTTAAGATCTCAGCTAAAGATGAAGTTAACAGTGATTCTCGTGTCGGTGACACTCTGAAAATCAAGGCTGCAGATGAAGCAAAAAGTTCTGTTGGTAAAGTTAAGCGTTCGCCTCATAATGCTGGGCTTGCAAAGTCTGGAAAATTATCAAAACCTCTAGATCATCACTCATCTTCCAGTACCGATCATAAAAGAGAAGATGGTGACTATGCTTTATCCACAGCACAAGTTCCATCAACTAATCCAATCAGCTTACCTACTGAAGTAAGGAGCAGGCGGAAGATGAACCTGTGGAAGTCACAAAGAGATTCAAAGACTTCAGATAACACTTCGATTGATCGACTTAATAGACCTGCTCAATCAATAGATGATAGACCAAATGATCTCAAGGAGCAGCATTCTAATTGTCTATCTTGGCATAAATTGCGTAGATGGTGTGTTTATGAGTGGTTCTATAGTGCAATTGATTTCCCATGGTTTGCCAAATGTGAGTTCGTAGAGTACTTAAATCACGTTGGATTAGGTCATATTCCTAGATTGACACGTGTCGAGTGGGGTGTTATTCGAAGTTCCCTTGGGAGGCCACGGAGATTCTCTGCTCAATTCTTGAAGGAAGAAAAACAGAAGCTAAATCAATATAGGGAATCTGTTAGGAAACACTATGCTGAACTTTGTGCAGGCACAAGGGAAGGACTTCCAACTGATTTAGCTCGGCCATTATCTGTTGGACAGCGTGTTATTGCCATTCATCCAAAAACAAGAGAGATCCATGATGGAAGTGTACTTACTGTTGATTATAGCAGGTGTCGTGTTCAATTTGACCGGCCTGAACTTGGGGTTGAATTTGTGATGGATATCGAGTGTATGCCTTTAAATCCAGTTGAAAACATGCCTGCAAATTTGTCAAGACATGGTGTGACACTTGGTAAAATATTTGGGAACCTCAACGAGGTCAAGATTAATGGCTTACTGAATGAGGCGAAGATTGAAGAATATATGAAATCAACCAGTAATGATAAACTTGATAGCACTGATGGTTCTGTGTTTGTTTCCCCCATCAACAAATTAATTAAACAAGCAAAGGTTGACCTTGGGTGCTCTAATCTACAAGCTAAATTTGGGCTTAGTGAGACTGTCGGTATTCAACAGGAGGCAAGTTCCCAATCTTCTGCCCTTGCTCAAATTCAAGCAAAAGAAGCTGATGTTCATGCGCTTTCTGAATTGTCACGTGCACTTAGCAAGAAGGAGGTGGTAGTGTCTGAATTGAAGCGCTTGAATGATGAGGTGTTGGAAAACCAAATAAGTGGAGACAACTTGCTCAAGGATTCAGAGAACTTTAAGAAGCAATATGCTGCTGTGCTATTACAGTTGAATGAAGTTAATGAACAGGTTTCCTCTGCTTTGTATTGCTTGAGGCAGCGCAATACATATCAAGGGACTTTACCATTGATGTTCCTCAAGCCAGTGCATGATATGGGCGACTCTTGCTCTCATGCTCAAGAACCCAGTTCCCATGTGGCTGAAATTGTGGGAAGTTCCAGAGCAAAGGCTCAAACAATGATCGATGAGGCAATGCAGGCAATTCTAGCTCTGAAAAAAGGAGAAAGTAATTTGGAGAATATCGAAGAAGCCATTGATTTTGTAAGTAATAGACTCTCAGTGGATGATTTGGCCTTGCCAACTGTGAGATCAACAGCTGCAGATACTAGTAATTCCCCTCCAGTATCTCAGAATCATTTCAACGTGTGTACATCAAACCCATCTATTGCTGATCATGTAGTTGGTCCCAAGTCCAATGGCCTATCCGACAAGACTGAAGTGGAGATCCCTTCAGAACTTATTGCACACTGTGTAGCCACTTTACTCATGATTCAGAAATGCACAGAAAGACAGTTTCCACCATCTGATGTTGCTCAGGTATTGGATTCTGCCGTCAGTGGTTTGCAGCCTTGTTGTCCTCAGAACCTTCCACTATATGCGGAGATCCAGAAATGCATGGGAATTATAAGGAGCCAGATACTTGCGCTCATACCCACATAG 3567 41.91 MKMGGGGATASGGTCFDGEQPFENRLVKLMAPSRKSRSVNKRLSSANEAFSSKYVEDASKSKQKKRKFADLLGPQWSKDEVEQFYEAYRKYGKDWKKVAAAVRNRSTEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYSVLRDSESEQESNENSGARRKPQKRLRGKSQNNNSKGLDAHFGDASQSQSFPTNYGCLSLLKKRRSGIKPHAVGKRTPRIPVSYSYDKDGRERFFSPSRHNSKPRVDDPNDDDVAHEIALVLTEASQRDGSPQLSQTPNPKIEGHVLSPTRNDRMQSESGMMNTKFRCSEMDEGGCELSLGSTGADNADYDLGKNSREIQRKGKRYHGKKPEVEESMYNHLDDIKEACSGTEEGQKSGSLRGKLETADLDVKSVRSSFKGPRKRSKKALFGDECSAFDALQTLADLSLMMPDANAETEPSAKVKEENLDVMHKSKIKGNHSVAGAEISALKTSKKVKAFGNNVGPILESERIQGSNNGNRKRKLKSSPFKISAKDEVNSDSRVGDTLKIKAADEAKSSVGKVKRSPHNAGLAKSGKLSKPLDHHSSSSTDHKREDGDYALSTAQVPSTNPISLPTEVRSRRKMNLWKSQRDSKTSDNTSIDRLNRPAQSIDDRPNDLKEQHSNCLSWHKLRRWCVYEWFYSAIDFPWFAKCEFVEYLNHVGLGHIPRLTRVEWGVIRSSLGRPRRFSAQFLKEEKQKLNQYRESVRKHYAELCAGTREGLPTDLARPLSVGQRVIAIHPKTREIHDGSVLTVDYSRCRVQFDRPELGVEFVMDIECMPLNPVENMPANLSRHGVTLGKIFGNLNEVKINGLLNEAKIEEYMKSTSNDKLDSTDGSVFVSPINKLIKQAKVDLGCSNLQAKFGLSETVGIQQEASSQSSALAQIQAKEADVHALSELSRALSKKEVVVSELKRLNDEVLENQISGDNLLKDSENFKKQYAAVLLQLNEVNEQVSSALYCLRQRNTYQGTLPLMFLKPVHDMGDSCSHAQEPSSHVAEIVGSSRAKAQTMIDEAMQAILALKKGESNLENIEEAIDFVSNRLSVDDLALPTVRSTAADTSNSPPVSQNHFNVCTSNPSIADHVVGPKSNGLSDKTEVEIPSELIAHCVATLLMIQKCTERQFPPSDVAQVLDSAVSGLQPCCPQNLPLYAEIQKCMGIIRSQILALIPT 1188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13148757 13164471 - CmoCh14G016690.1 Cmo14g01669 396935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01669 1188 PANTHER LIN-9 30 1188 IPR010561 GO:0006351|GO:0017053
Cmo14g01669 1188 MobiDBLite consensus disorder prediction 145 191 - -
Cmo14g01669 1188 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 30 1188 IPR028306 -
Cmo14g01669 1188 MobiDBLite consensus disorder prediction 267 284 - -
Cmo14g01669 1188 MobiDBLite consensus disorder prediction 145 162 - -
Cmo14g01669 1188 MobiDBLite consensus disorder prediction 490 637 - -
Cmo14g01669 1188 MobiDBLite consensus disorder prediction 169 191 - -
Cmo14g01669 1188 Pfam Myb-like DNA-binding domain 75 110 IPR001005 -
Cmo14g01669 1188 CDD SANT 76 110 IPR001005 -
Cmo14g01669 1188 MobiDBLite consensus disorder prediction 582 596 - -
Cmo14g01669 1188 MobiDBLite consensus disorder prediction 516 542 - -
Cmo14g01669 1188 MobiDBLite consensus disorder prediction 601 619 - -
Cmo14g01669 1188 Coils Coil 917 937 - -
Cmo14g01669 1188 Coils Coil 1040 1060 - -
Cmo14g01669 1188 SUPERFAMILY Homeodomain-like 71 118 IPR009057 -
Cmo14g01669 1188 ProSiteProfiles SANT domain profile. 71 108 IPR017884 -
Cmo14g01669 1188 SMART sant 72 120 IPR001005 -
Cmo14g01669 1188 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 110 IPR017930 -
Cmo14g01669 1188 Pfam DIRP 659 760 IPR033471 -
Cmo14g01669 1188 Gene3D - 17 128 - -
Cmo14g01669 1188 Coils Coil 712 732 - -
Cmo14g01669 1188 MobiDBLite consensus disorder prediction 232 253 - -
Cmo14g01669 1188 MobiDBLite consensus disorder prediction 265 299 - -
Cmo14g01669 1188 MobiDBLite consensus disorder prediction 558 579 - -
Cmo14g01669 1188 SMART DIRP_2 660 761 IPR033471 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01669 - - - csv:101221669 2081.6
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01480 Cmo14g01669 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01083 Cmo-Chr12:9932928 Cmo14g01669 Cmo-Chr14:13148757 1.62E-22 dispersed
Cmo14g01669 Cmo-Chr14:13148757 Cmo06g01480 Cmo-Chr6:10656281 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g335 . . . . . Bpe14g01136 . . . . Cma06g01485 Cma14g01632 Car06g01277 Car14g01458 . Cpe08g00199 Cpe03g01374 Bhi01g00974 . . . Hepe05g1463 . . . . . . . . . . . Cone7ag0162 Cone4ag0158 Lsi05g01524 . . Cme06g00712 Blo02g00515 . Bda11g00533 Bda13g00178 . Bpe13g00656 . Bma06g01509 . Cmo06g01480 Cmo14g01669 . . . . . . . . . . . . . Cla05g00634 Cam05g0695 Cec05g0708 Cco05g0704 Clacu05g0690 Cmu05g0657 Cre05g0729 . Csa03g01442 Chy06g00683 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003565 1 5 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 4 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11044 PF06584 DIRP 3.60E-30 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01669 Cmo_Chr14 FPKM 2.996341 3.514868 3.536036 2.636286 1.97614 2.184026 1.744768 0.489218 0.537899 0.650699