Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01672 ATGAACCACACGACGGATCATTCCCTGAAGGAACCCAGAAAATCCAAGAAGGAAGGAAGCGCTTCTTCCTCTTCCCCTAACTTCGTTTCTTCTCTCGAACACGATCCCCATGTGATCGGAATCGGAATCTCCATTCTCTCTGAAGCTCTTCAATCTTCTTCTTCTTCTCACCTTGCCGGAGGCCGTACCATGAACCCGTACGGTCACTCTATGGAACCCTCTCACTCCGATCCTTCGCCTGAATGGACCACTTCCGGACCCGATACTGCTCATGGAGAGCCGCTTTGGCCTTTGGGATCGAGGGAGCGGGAATCGTACCCTGAACGACCTGAAGAGACTGATTGTATATATTACCTACGTACGGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCTCGTGAGCGTAACGCGGTTTTAGGAGGTTCGAGACTTGCTGGAAGAGAGTATCCCGAACGAATAGGGCAGCCCGTGTGCCAGTACTATATGAGGACAGGAATGTGCAAATTTGGCGCTTCCTGTAAGTATCACCATCCTCAGCAGGAAAGAGGTTCTCTTAGCCCCGTCTCACTGAATTTCTATGGCTATCCACTACGACCGGGTGAAAAGGAGTGTTCTTATTATTTGAAGAATTGGCAGTGTAAGTTTGGTGCTACGTGCAAATTTCATCACCCAGAACCGGCTGGCTTGCAGTTTCCAGCACCATCACCTATTCAGGTTACACCAGTGCCTGCACCCTCTGTTTATCCTCCTGTGCAATCTCCATCTGCTCATTCGTCACAGCAATATGGAGTAATACTTGCAAGGCCTTCATTGCTGTCAAGCCCATATGTTCCCGGCCCTTATGGTCCTATGTTGGTTTCCCCAGGCGTTTTCCCAAGTTGGAGTCCTTACCCAGCACCTATGAGTCCAGTAGCCTCCCCCAGTGCCCAACCTTCTGTTGGATCAGGGCCACTTTATGGTATGGCACACGTTTCACCTTCTGCACCTGTTTATGCTGGATCCTATCAGCCCATGCCATCTGCTGGTCCCTCTAGTACTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGCCAACCAGAGTGTCAATATTACATGAGAACAGGGGATTGTAAATTTGGATCCTCTTGTAGATACCATCACCCGCCAGAATTCGTTACTTCAGGTCCAGGTGTTGTCCTTAGCCAGCTAGGTCTTCCTCTGCGCCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGCAAGTTTGGCCCTGCGTGCAAATTCGACCACTCCATGGATCGACTTAGTTATAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCAGTAGCCGGTACTTTAGCCCCATCGTCCTCATCTTCAGAGTTGAAGCCTGAACATTTTTCAGGATCCAGAAAGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTACTAGTGGATTGGTTGGTTCAACTACATCGAGGACAGAAATGTATTCTCATTCAAGTGTTCAACGATCTTCCCAAACTTCTGGCCCGTCACAGAGCAGTACCTCCAGCACCGCCAGTGTGGAAGGTTGTACTTGA 1617 49.47 MNHTTDHSLKEPRKSKKEGSASSSSPNFVSSLEHDPHVIGIGISILSEALQSSSSSHLAGGRTMNPYGHSMEPSHSDPSPEWTTSGPDTAHGEPLWPLGSRERESYPERPEETDCIYYLRTGFCGYGSRCRFNHPRERNAVLGGSRLAGREYPERIGQPVCQYYMRTGMCKFGASCKYHHPQQERGSLSPVSLNFYGYPLRPGEKECSYYLKNWQCKFGATCKFHHPEPAGLQFPAPSPIQVTPVPAPSVYPPVQSPSAHSSQQYGVILARPSLLSSPYVPGPYGPMLVSPGVFPSWSPYPAPMSPVASPSAQPSVGSGPLYGMAHVSPSAPVYAGSYQPMPSAGPSSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPEFVTSGPGVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMDRLSYSPSASSLADMPVAPYPVGSVAGTLAPSSSSSELKPEHFSGSRKDSNPSRMSSSMSTSTSGLVGSTTSRTEMYSHSSVQRSSQTSGPSQSSTSSTASVEGCT 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13175212 13181593 + CmoCh14G016720.1 Cmo14g01672 396938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01672 538 Gene3D - 152 234 - -
Cmo14g01672 538 Gene3D - 348 394 - -
Cmo14g01672 538 SUPERFAMILY CCCH zinc finger 157 185 IPR036855 GO:0046872
Cmo14g01672 538 MobiDBLite consensus disorder prediction 481 538 - -
Cmo14g01672 538 MobiDBLite consensus disorder prediction 338 362 - -
Cmo14g01672 538 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 408 432 IPR000571 GO:0046872
Cmo14g01672 538 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 361 386 IPR000571 GO:0046872
Cmo14g01672 538 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 112 136 IPR000571 GO:0046872
Cmo14g01672 538 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 203 228 IPR000571 GO:0046872
Cmo14g01672 538 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 158 182 IPR000571 GO:0046872
Cmo14g01672 538 MobiDBLite consensus disorder prediction 1 33 - -
Cmo14g01672 538 MobiDBLite consensus disorder prediction 50 107 - -
Cmo14g01672 538 MobiDBLite consensus disorder prediction 69 86 - -
Cmo14g01672 538 MobiDBLite consensus disorder prediction 1 18 - -
Cmo14g01672 538 ProSiteProfiles Zinc finger C3H1-type profile. 155 183 IPR000571 GO:0046872
Cmo14g01672 538 Gene3D - 404 451 - -
Cmo14g01672 538 Gene3D - 100 148 - -
Cmo14g01672 538 ProSiteProfiles Zinc finger C3H1-type profile. 109 137 IPR000571 GO:0046872
Cmo14g01672 538 SUPERFAMILY CCCH zinc finger 409 436 IPR036855 GO:0046872
Cmo14g01672 538 SUPERFAMILY CCCH zinc finger 203 229 IPR036855 GO:0046872
Cmo14g01672 538 ProSiteProfiles Zinc finger C3H1-type profile. 201 229 IPR000571 GO:0046872
Cmo14g01672 538 ProSiteProfiles Zinc finger C3H1-type profile. 405 433 IPR000571 GO:0046872
Cmo14g01672 538 SMART c3hfinal6 201 228 IPR000571 GO:0046872
Cmo14g01672 538 SMART c3hfinal6 155 182 IPR000571 GO:0046872
Cmo14g01672 538 SMART c3hfinal6 405 432 IPR000571 GO:0046872
Cmo14g01672 538 SMART c3hfinal6 359 386 IPR000571 GO:0046872
Cmo14g01672 538 SMART c3hfinal6 109 136 IPR000571 GO:0046872
Cmo14g01672 538 MobiDBLite consensus disorder prediction 341 356 - -
Cmo14g01672 538 SUPERFAMILY CCCH zinc finger 110 137 IPR036855 GO:0046872
Cmo14g01672 538 SUPERFAMILY CCCH zinc finger 363 386 IPR036855 GO:0046872
Cmo14g01672 538 MobiDBLite consensus disorder prediction 460 538 - -
Cmo14g01672 538 ProSiteProfiles Zinc finger C3H1-type profile. 359 387 IPR000571 GO:0046872
Cmo14g01672 538 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 72 519 - -
Cmo14g01672 538 PANTHER PROTEIN PHOSPHATASE RELATED 72 519 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01479 Cmo14g01672 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00859 Cmo-Chr10:4063513 Cmo14g01672 Cmo-Chr14:13175212 3.18E-89 dispersed
Cmo11g00965 Cmo-Chr11:5082995 Cmo14g01672 Cmo-Chr14:13175212 1.73E-96 dispersed
Cmo14g01672 Cmo-Chr14:13175212 Cmo13g00808 Cmo-Chr13:7608227 7.03E-17 dispersed
Cmo14g01672 Cmo-Chr14:13175212 Cmo06g01479 Cmo-Chr6:10642781 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11047 PF00642 zf-CCCH 1.50E-07 CL0537 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01672 - - csv:101221033 816.609