Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01686 ATGGGTTTGCACCTTCTTCCCATTGATGCTGCCTTGAAGATTGCTTCTTCGCTTCAGGCATCGGACATTTGTTCTTTGGGCTGTTGCTCGCGATTTTGTAAGCAACTCTGCGATTCCGATTACCTGTGGGAATCTCTCACTAGAGAAAGATGGCCTTATATCAATGTTGCTTCAGTCTCTTCTTCATCAACTCTCGCACAATCGCCTATCTCCATGGGATGGAAAAGCTTTTACATCCAGAGACATATCGAGATATCGAGACGAGCCCAAGCAGCGGTAAAGTTTATAGAACAATACTCTCCTTCTTCCCCAATTGAGGGTGGAGACTATCTCAGGACAATTGTAGGCTTGTGGGATTTGAAGCTTAGTTTTATAGATGCTCAAATGGTGCTTTTCAAACCTCACCTGAATGAGCTGCTGAACTTGGTTGGCTTACACTACTGTCAAAGTTGGCTTCAAGTTCCTGGGAATGAAATCATAGAAGCACTTGAAAGATGCAAGATCTCAGAGAGGCAAGTAAGTGTGAAATGGTGGAAGCTGGGAAGATGGTTTTATGGCTTCCGTATGAGAGACGAGCAACAAACTCGTCGAGTCTCTCTAGCAGCACTCATAGCAGAAGAAGGGGAAGACGTTCTCGAGGTGCTTAGCCGAGGTGCTGTTAACGAGGTGCTTCGAGTTCAGGTATCTGTAGGTGAGCCCTTTGCCAATCTTACACAACGAAACAATTCACAAACACATCAACGAAATGGGACTCACAAAAATTCCAGCCTCACATTTTCATCATACTTTCGTCTCTCTTTCACTGCTCCCCAATTTCGCCGACTTGATCCTAAGCTTCAGCCCACTCAGCCATTTCCACCGCCGGTTCTACCTTCAAAAACTATGCTCCTTTGCTCCTCCGCCGGCGGCGGATTCAACCTTCTTTCGCCGGCGAATACAGCCAACTCAACCCGTCTTTCTTCTCATTTGGTCCATCGGAATCCGGTGAGTTCATTCTCTTTCTCTTTTCGATCTTCTTCTTTACATTTATCAAAGAACTTCAAATCCAATAGGGATAGACGGTGGTACCCCATTGTAGCTTCTTCGACTCCAGTCATTGAATCCACTCAATCTTCGTTTAGGACCAAAAACCCTAAAGATATTAACGTTTTGGTGGTGGGTTCTACAGGGTATATTGGGAATTTTGTGGTTAAGGAGCTGGTTAATAGAGGGTTCAATGTCATTGCTATTGCTAGGGAGAAGAGTGGAATTAGAGGTAGAAACAGTAAGGAACAAACTTCTAATGAGTTGAAAGGAGCTAATATTTGCTTTTCAGATGTAACCCATTTGGATGCTTTGGAGAAATCTTTAAGGGATTTGAATATCCCTATTGATGTTGTGGTTTCTTGCCTTGCTAGCCGAACTGGCGGCATCAAGGACTCATGGAAGATCGATTATGAGGCCACAAAGAACAGTTTAGTAGCTGGAAGAAACCGTGGGGCTTCTCATTTTGTGTTGCTTTCTGCAATTTGTGTGCAGAAACCCCTTCTTGAATTCCAACGTGCTAAGCTCAAATTTGAAGCTGAGCTTATGGAAGAAGCAGGTAAAGAAGATAGTGGATTTAGTTATAGCATTGTGAGGCCAACTGCTTTCTTTAAGAGCTTAGGAGGTCAAGTTGAGTTGGTGAAAGATGGTAAGCCATATGTGATGTTTGGGGATGGGAAGTTGTGTGCCTGTAAGCCAATCAGTGAGCAGGATTTGGCTTCTTTTATTGCTGATTGTGTGTTGAGTGAAGATAAAATCAATCAGGTTTTGCCGATTGGTGGCCCGGGGAACGCGTTAACTCCGTTAGAACAGGGCGAGATCTTGTTTAGGCTGTTGGGGAAAGAACCAAATTTCTTGAAAGTACCAATTGGGATTATGGATTTTGCCATTGGAATTCTTGATTTCCTTGCTAAATTGTTTCCCGCCATGGAAGATGCAGCGGAGTATGGGAAAATTGGGAGATATTATGCAGCTGAGAGTATGTTGATCTTAGATCCCGAAACCGGAGAGTACAGTGCCGAAAAAACACCAAGTTATGGGAATGACACATTGGAAGATTTCTTTGAAAGGGTCCTTAGGGAAGGGATGGCTGGTCAAGAATTAGGTGAACAGACAATTTTTTGA 2148 43.72 MGLHLLPIDAALKIASSLQASDICSLGCCSRFCKQLCDSDYLWESLTRERWPYINVASVSSSSTLAQSPISMGWKSFYIQRHIEISRRAQAAVKFIEQYSPSSPIEGGDYLRTIVGLWDLKLSFIDAQMVLFKPHLNELLNLVGLHYCQSWLQVPGNEIIEALERCKISERQVSVKWWKLGRWFYGFRMRDEQQTRRVSLAALIAEEGEDVLEVLSRGAVNEVLRVQVSVGEPFANLTQRNNSQTHQRNGTHKNSSLTFSSYFRLSFTAPQFRRLDPKLQPTQPFPPPVLPSKTMLLCSSAGGGFNLLSPANTANSTRLSSHLVHRNPVSSFSFSFRSSSLHLSKNFKSNRDRRWYPIVASSTPVIESTQSSFRTKNPKDINVLVVGSTGYIGNFVVKELVNRGFNVIAIAREKSGIRGRNSKEQTSNELKGANICFSDVTHLDALEKSLRDLNIPIDVVVSCLASRTGGIKDSWKIDYEATKNSLVAGRNRGASHFVLLSAICVQKPLLEFQRAKLKFEAELMEEAGKEDSGFSYSIVRPTAFFKSLGGQVELVKDGKPYVMFGDGKLCACKPISEQDLASFIADCVLSEDKINQVLPIGGPGNALTPLEQGEILFRLLGKEPNFLKVPIGIMDFAIGILDFLAKLFPAMEDAAEYGKIGRYYAAESMLILDPETGEYSAEKTPSYGNDTLEDFFERVLREGMAGQELGEQTIF 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13241263 13245992 + CmoCh14G016860.1 Cmo14g01686 396952

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01686 715 Pfam NAD(P)H-binding 387 589 IPR016040 -
Cmo14g01686 715 SUPERFAMILY F-box domain 3 83 IPR036047 GO:0005515
Cmo14g01686 715 Gene3D - 383 696 - -
Cmo14g01686 715 PANTHER DIVINYL CHLOROPHYLLIDE A 8-VINYL-REDUCTASE, CHLOROPLASTIC 314 715 IPR044201 GO:0016491
Cmo14g01686 715 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 383 714 IPR036291 -
Cmo14g01686 715 Pfam F-box domain 6 44 IPR001810 GO:0005515
Cmo14g01686 715 Gene3D - 2 88 - -
Cmo14g01686 715 CDD SDR_a5 382 604 - -
Cmo14g01686 715 ProSiteProfiles F-box domain profile. 1 46 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01686 K19073 DVR; divinyl chlorophyllide a 8-vinyl-reductase [EC:1.3.1.75] - csv:101218189 714.916
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01467 Cmo14g01686 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00281 Cmo-Chr2:1388888 Cmo14g01686 Cmo-Chr14:13241263 1.38E-08 dispersed
Cmo14g01686 Cmo-Chr14:13241263 Cmo19g00657 Cmo-Chr19:7073158 7.11E-09 dispersed
Cmo06g01466 Cmo-Chr6:10564223 Cmo14g01686 Cmo-Chr14:13241263 1.83E-07 transposed
Cmo06g01467 Cmo-Chr6:10566136 Cmo14g01686 Cmo-Chr14:13241263 4.92E-124 transposed
Cmo14g01686 Cmo-Chr14:13241263 Cmo06g01465 Cmo-Chr6:10563561 3.46E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g357 . . . . . Bpe14g01148 . . . . Cma06g01467 . Car06g01265 . Sed02g1220 Cpe08g00213 Cpe03g01387 Bhi01g00951 Tan10g0951 Cmetu06g2030 . Hepe05g1482 . Lcy11g1452 . . . . . . . . . . . Lsi05g01503 . . Cme06g00690 . . . . . . . . . Cmo06g01467 Cmo14g01686 . . . . . . . . . . . . . . . . . . . . . Csa03g01415 Chy06g00657 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005829 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01686 Cmo_Chr14 FPKM 0.0 0.659292 0.503945 0.760398 55.376335 60.370655 55.882416 0.0 0.0 0.0