Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01689 ATGTCTTTGAGGAGTATAATCCAGGAAATGAGATCCAGGTCCCGCCGTGTTGTTCAGGATGGTTCGACGGCTGAAGTCGGCGATGGTTTGGCGCAGAGCTGTTGGACTTACATGCCTCAGGAGTTGTTGAGAGAGATTTTGGTTAGAATCGAGAGCTCTGAGAATGTTTGGCCTCTGCGGAAGAGCGTAGTGGCCTGCGCCGGAGTTTGCCGGAGCTGGAGACGGATTACTAAGGAGATTGTTAAAACTCCCGAGGTTTCTGGCAGTTTGACATTTCCTATTTCTGTGAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAGCGAAATCGATCTGCACAAACTTATTTCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTCTGCATGTTGATGACATGTCCAAGGCAAGTGGCACCTTCGTTGGAAAATTAAGATCTAATTTTTTAGGAACAAAGTTCACAATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAGCTTTCAAAAAGCCGCTCCTCTAGGCTTGTGGGCCTGAAACAAGTGTCACCTAGAGTTCCTGCCGGCAACTACCCAGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGCTATTCCTGCCTCAGCTATTGAGCCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCGCTAAGCCGTATAGACTTTCTTCCATCATTGAGATTTTCCTGGTCAAAGTCGAATCATATGGATGATCAACCATCAGGATCTTCAACTGATCAGGAGGATCGAGTTTTAGTGCTTAGGAACAAGGCTGCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCTTCGGTGAAAAACTTTCAGTTAGTCGCTTCACCTGAAAACGGACTTGCTGGACCTGAACACGAAAAGATTATCCTTCAATTTGGAAAAGTAGGAAAGGATATATTTACGATGGACTACAGATACCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGCAGTTTTGACACAAAGATCGCGTGTGAATGA 1164 46.13 MSLRSIIQEMRSRSRRVVQDGSTAEVGDGLAQSCWTYMPQELLREILVRIESSENVWPLRKSVVACAGVCRSWRRITKEIVKTPEVSGSLTFPISVKQPGPRDLLLHCFIKRNRSAQTYFLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHVDDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKLSKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGGVAPIQTEFSLSRIDFLPSLRFSWSKSNHMDDQPSGSSTDQEDRVLVLRNKAARWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGLAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13253699 13257575 - CmoCh14G016890.1 Cmo14g01689 396955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01689 387 Pfam F-box domain 38 82 IPR001810 GO:0005515
Cmo14g01689 387 ProSitePatterns Tub family signature 2. 372 387 IPR018066 -
Cmo14g01689 387 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cmo14g01689 387 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Cmo14g01689 387 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Cmo14g01689 387 PRINTS Tubby superfamily signature 299 316 IPR000007 -
Cmo14g01689 387 PRINTS Tubby superfamily signature 317 333 IPR000007 -
Cmo14g01689 387 PRINTS Tubby superfamily signature 344 363 IPR000007 -
Cmo14g01689 387 PRINTS Tubby superfamily signature 365 387 IPR000007 -
Cmo14g01689 387 SUPERFAMILY F-box domain 29 78 IPR036047 GO:0005515
Cmo14g01689 387 SUPERFAMILY Tubby C-terminal domain-like 84 387 IPR025659 -
Cmo14g01689 387 ProSitePatterns Tub family signature 1. 317 330 IPR018066 -
Cmo14g01689 387 Gene3D Tubby Protein; Chain A 92 387 IPR025659 -
Cmo14g01689 387 Pfam Tub family 96 382 IPR000007 -
Cmo14g01689 387 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 387 - -
Cmo14g01689 387 PANTHER TUBBY-RELATED 1 387 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo14g01689 Cmo17g00296 CCT
Cmo08g01177 Cmo14g01689 CCT
Cmo08g01177 Cmo14g01689 ECH
Cmo14g01689 Cmo17g00296 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01689 Cmo-Chr14:13253699 Cmo16g00390 Cmo-Chr16:1804780 5.97E-150 dispersed
Cmo14g01689 Cmo-Chr14:13253699 Cmo17g00296 Cmo-Chr17:1778045 1.45E-153 wgd
Cmo14g01689 Cmo-Chr14:13253699 Cmo06g01463 Cmo-Chr6:10551013 1.31E-101 wgd
Cmo14g01689 Cmo-Chr14:13253699 Cmo08g01177 Cmo-Chr8:7495224 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11051 PF01167 Tub 3.60E-109 CL0395 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01689 K19600 - csv:101217713 739.184